FvH4_5g23911

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0019711
Physical Location & Seq
Reverse (-)
15210550 .. 15211631
1082 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g23911.t1

Sequence Viewer

Length: 246 bp
ATGCCGCTTGGCTTTCTGGGTGTGCCGGGCTTGGAACCAAAGAGCTGTGATATATTTCCCAAGACATGGAGCAAGTACGCCTTCTGTCAAACTGCCACCAGTACCGAGTCTTTTCTTTCCAGGAAGTGCTTGACTGGAGATTTCTTGTCCTTGGAGATTTTCTTCTGGTTTCCTTTGTTAATTGCACTTAGTGGTCAGTTCTGCTTAAATGATCAGTACAAGAGACGTGATGCTAGCTACTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

9.29

Weight (kDa)

7.62

Isoelectric Point (pI)

52.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019711)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g23911
prunus_persica Prupe.5G021200_v2.0.a1
rosa_rugosa Rorug07G0141300
rosa_samantha Rh2DG304200 Rh7AG273100 Rh7BG268500 Rh7CG292300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 66
AciI CCGC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 191
AfaI GTAC 3 cut(s) 77, 103, 218
AfiI CCNNNNNNNGG 1 cut(s) 66
AjiI CACGTC 1 cut(s) 227
AjnI CCWGG 1 cut(s) 119
AluBI AGCT 2 cut(s) 45, 237
AluI AGCT 2 cut(s) 45, 237
Alw26I GTCTC 1 cut(s) 217
AsuC2I CCSGG 1 cut(s) 27
AsuNHI GCTAGC 1 cut(s) 233
BciT130I CCWGG 1 cut(s) 121
BclI TGATCA 1 cut(s) 211
BcnI CCSGG 1 cut(s) 27
BcoDI GTCTC 1 cut(s) 217
BfaI CTAG 1 cut(s) 234
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme1390I CCNGG 2 cut(s) 27, 121
BmgBI CACGTC 1 cut(s) 227
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 2 cut(s) 27, 121
BmsI GCATC 1 cut(s) 220
BmtI GCTAGC 1 cut(s) 237
BpmI CTGGAG 1 cut(s) 156
BpuMI CCSGG 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 150
Bsc4I CCNNNNNNNGG 1 cut(s) 66
Bse1I ACTGG 2 cut(s) 99, 139
BseBI CCWGG 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 150
BseLI CCNNNNNNNGG 1 cut(s) 66
BseNI ACTGG 2 cut(s) 99, 139
BsiSI CCGG 1 cut(s) 26
BslI CCNNNNNNNGG 1 cut(s) 66
BsmAI GTCTC 1 cut(s) 217
BsmBI CGTCTC 1 cut(s) 217
Bsp143I GATC 1 cut(s) 211
BspACI CCGC 1 cut(s) 5
BspLI GGNNCC 1 cut(s) 36
BspOI GCTAGC 1 cut(s) 237
BsrI ACTGG 2 cut(s) 99, 139
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 1 cut(s) 211
BssT1I CCWWGG 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 121
BstC8I GCNNGC 1 cut(s) 235
BstDEI CTNAG 1 cut(s) 188
BstKTI GATC 1 cut(s) 214
BstMAI GTCTC 1 cut(s) 217
BstMBI GATC 1 cut(s) 211
BstNI CCWGG 1 cut(s) 121
BstSCI CCNGG 2 cut(s) 25, 119
BtrI CACGTC 1 cut(s) 227
Cac8I GCNNGC 1 cut(s) 235
Csp6I GTAC 3 cut(s) 76, 102, 217
CviAII CATG 1 cut(s) 66
CviJI RGCY 4 cut(s) 12, 30, 45, 237
CviKI_1 RGCY 4 cut(s) 12, 30, 45, 237
CviQI GTAC 3 cut(s) 76, 102, 217
DdeI CTNAG 1 cut(s) 188
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
DraIII CACNNNGTG 1 cut(s) 191
Eco130I CCWWGG 1 cut(s) 150
EcoRII CCWGG 1 cut(s) 119
EcoT14I CCWWGG 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 150
Esp3I CGTCTC 1 cut(s) 217
FaeI CATG 1 cut(s) 69
FaiI YATR 2 cut(s) 53, 67
FalI AAGNNNNNCTT 2 cut(s) 65, 97
FatI CATG 1 cut(s) 65
FbaI TGATCA 1 cut(s) 211
Fnu4HI GCNGC 1 cut(s) 5
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 1 cut(s) 234
GluI GCNGC 1 cut(s) 5
GsuI CTGGAG 1 cut(s) 156
HapII CCGG 1 cut(s) 26
Hin1II CATG 1 cut(s) 69
HinfI GANTC 1 cut(s) 107
HpaII CCGG 1 cut(s) 26
HpyAV CCTTC 1 cut(s) 91
HpyCH4IV ACGT 1 cut(s) 226
HpyCH4V TGCA 1 cut(s) 185
HpyF3I CTNAG 1 cut(s) 188
HpySE526I ACGT 1 cut(s) 226
Hsp92II CATG 1 cut(s) 69
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 1 cut(s) 211
LmnI GCTCC 1 cut(s) 69
LpnPI CCDG 7 cut(s) 2, 39, 106, 112, 120, 133, 151
LweI GCATC 1 cut(s) 220
MaeI CTAG 1 cut(s) 234
MaeII ACGT 1 cut(s) 226
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MboII GAAGA 1 cut(s) 154
MluCI AATT 1 cut(s) 180
MlyI GAGTC 1 cut(s) 116
MseI TTAA 2 cut(s) 179, 206
MspI CCGG 1 cut(s) 26
MspR9I CCNGG 2 cut(s) 27, 121
MvaI CCWGG 1 cut(s) 121
NciI CCSGG 1 cut(s) 27
NdeII GATC 1 cut(s) 211
NheI GCTAGC 1 cut(s) 233
NlaIII CATG 1 cut(s) 69
NlaIV GGNNCC 1 cut(s) 36
PflMI CCANNNNNTGG 1 cut(s) 66
PfoI TCCNGGA 1 cut(s) 119
PkrI GCNGC 1 cut(s) 6
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
Psp6I CCWGG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 119
PspN4I GGNNCC 1 cut(s) 36
RsaI GTAC 3 cut(s) 77, 103, 218
RsaNI GTAC 3 cut(s) 76, 102, 217
SaqAI TTAA 2 cut(s) 179, 206
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 1 cut(s) 211
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 2 cut(s) 27, 121
SetI ASST 3 cut(s) 47, 229, 239
SfaNI GCATC 1 cut(s) 220
Sse9I AATT 1 cut(s) 180
SsiI CCGC 1 cut(s) 5
SspMI CTAG 1 cut(s) 234
StyD4I CCNGG 2 cut(s) 25, 119
StyI CCWWGG 1 cut(s) 150
TaiI ACGT 1 cut(s) 229
TasI AATT 1 cut(s) 180
TatI WGTACW 1 cut(s) 216
TauI GCSGC 1 cut(s) 7
Tru1I TTAA 2 cut(s) 179, 206
Tru9I TTAA 2 cut(s) 179, 206
Van91I CCANNNNNTGG 1 cut(s) 66
XspI CTAG 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.