Rh2DG304200

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
36541640 .. 36542029
390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG304200.1

Sequence Viewer

Length: 390 bp
ATGTGCACTGTTTCAGTAATGATTAAATTAACTTTTACGTCTATTGAGGGTTTGGATCATTATGTGCAATATATTCACTTTGAATGTTTACGAAATTCAGCAACTCTTCCCCATATTTTGTCTACAAGACTCATCTCACCAGCATTTGCTTGTAAATTTTTATCTCAGGGTGTGTCGGGCTTGGAACTATGGAGCTGTGATATAATTCTTAAGACATGGAGCAAGTACGCCTTCTGTCAAATTGCCACCAGTACTGAGTCTTTTCTTTCCAGGAAGTGCTTGACTGGAGATTTCTTGTCCTTAGAGATTTTGTTCTGGTTTTCTTTGTTAACTGAACTTAGTGGTCAGTTCCTCTTAAATGATCAGTACAGGAGACATGATGATATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.83

Weight (kDa)

6.03

Isoelectric Point (pI)

61.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019711)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g23911
prunus_persica Prupe.5G021200_v2.0.a1
rosa_rugosa Rorug07G0141300
rosa_samantha Rh2DG304200 Rh7AG273100 Rh7BG268500 Rh7CG292300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 122
AclWI GGATC 1 cut(s) 63
AcsI RAATTY 2 cut(s) 94, 155
AfaI GTAC 3 cut(s) 227, 253, 368
AflII CTTAAG 1 cut(s) 209
AgsI TTSAA 1 cut(s) 83
AjnI CCWGG 1 cut(s) 269
AluBI AGCT 1 cut(s) 195
AluI AGCT 1 cut(s) 195
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 367
Alw44I GTGCAC 1 cut(s) 4
AlwI GGATC 1 cut(s) 63
ApaLI GTGCAC 1 cut(s) 4
ApoI RAATTY 2 cut(s) 94, 155
AsuHPI GGTGA 1 cut(s) 129
BaeGI GKGCMC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 8
BciT130I CCWGG 1 cut(s) 271
BclI TGATCA 1 cut(s) 361
BcoDI GTCTC 1 cut(s) 367
BfaI CTAG 1 cut(s) 388
BfrI CTTAAG 1 cut(s) 209
BmcAI AGTACT 1 cut(s) 253
Bme1390I CCNGG 1 cut(s) 271
BmrFI CCNGG 1 cut(s) 271
BpmI CTGGAG 1 cut(s) 306
Bse1I ACTGG 2 cut(s) 249, 289
BseBI CCWGG 1 cut(s) 271
BseMII CTCAG 2 cut(s) 179, 246
BseNI ACTGG 2 cut(s) 249, 289
BseSI GKGCMC 1 cut(s) 8
BsiHKAI GWGCWC 1 cut(s) 8
BsmAI GTCTC 1 cut(s) 367
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 2 cut(s) 55, 361
BspCNI CTCAG 2 cut(s) 178, 247
BspPI GGATC 1 cut(s) 63
BspTI CTTAAG 1 cut(s) 209
BsrI ACTGG 2 cut(s) 249, 289
BssMI GATC 2 cut(s) 55, 361
Bst2UI CCWGG 1 cut(s) 271
Bst4CI ACNGT 1 cut(s) 10
Bst6I CTCTTC 1 cut(s) 111
BstAFI CTTAAG 1 cut(s) 209
BstDEI CTNAG 4 cut(s) 165, 255, 301, 338
BstKTI GATC 2 cut(s) 58, 364
BstMAI GTCTC 1 cut(s) 367
BstMBI GATC 2 cut(s) 55, 361
BstNI CCWGG 1 cut(s) 271
BstSCI CCNGG 1 cut(s) 269
BstSLI GKGCMC 1 cut(s) 8
BtsIMutI CAGTG 1 cut(s) 6
Csp6I GTAC 3 cut(s) 226, 252, 367
CviAII CATG 2 cut(s) 216, 377
CviJI RGCY 2 cut(s) 180, 195
CviKI_1 RGCY 2 cut(s) 180, 195
CviQI GTAC 3 cut(s) 226, 252, 367
DdeI CTNAG 4 cut(s) 165, 255, 301, 338
DpnI GATC 2 cut(s) 57, 363
DpnII GATC 2 cut(s) 55, 361
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Eco32I GATATC 1 cut(s) 385
EcoRII CCWGG 1 cut(s) 269
EcoRV GATATC 1 cut(s) 385
FaeI CATG 2 cut(s) 219, 380
FaiI YATR 7 cut(s) 63, 72, 114, 190, 203, 217, 378
FalI AAGNNNNNCTT 2 cut(s) 215, 247
FatI CATG 2 cut(s) 215, 376
FbaI TGATCA 1 cut(s) 361
FblI GTMKAC 1 cut(s) 122
FspBI CTAG 1 cut(s) 388
GsuI CTGGAG 1 cut(s) 306
Hin1II CATG 2 cut(s) 219, 380
HincII GTYRAC 1 cut(s) 330
HindII GTYRAC 1 cut(s) 330
HinfI GANTC 2 cut(s) 129, 257
HpaI GTTAAC 1 cut(s) 330
HphI GGTGA 1 cut(s) 129
Hpy166II GTNNAC 4 cut(s) 6, 89, 123, 330
Hpy8I GTNNAC 4 cut(s) 6, 89, 123, 330
HpyAV CCTTC 1 cut(s) 241
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 2 cut(s) 6, 67
HpyF3I CTNAG 4 cut(s) 165, 255, 301, 338
HpySE526I ACGT 1 cut(s) 38
Hsp92II CATG 2 cut(s) 219, 380
Ksp22I TGATCA 1 cut(s) 361
KspAI GTTAAC 1 cut(s) 330
Kzo9I GATC 2 cut(s) 55, 361
LmnI GCTCC 2 cut(s) 192, 219
LpnPI CCDG 8 cut(s) 152, 153, 256, 262, 270, 283, 301, 355
MaeI CTAG 1 cut(s) 388
MaeII ACGT 1 cut(s) 38
MalI GATC 2 cut(s) 57, 363
MboI GATC 2 cut(s) 55, 361
MboII GAAGA 1 cut(s) 98
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 5 cut(s) 26, 94, 155, 204, 240
MlyI GAGTC 2 cut(s) 123, 266
MnlI CCTC 2 cut(s) 40, 362
MseI TTAA 5 cut(s) 24, 29, 210, 329, 356
MspCI CTTAAG 1 cut(s) 209
MspR9I CCNGG 1 cut(s) 271
MvaI CCWGG 1 cut(s) 271
NdeII GATC 2 cut(s) 55, 361
NlaIII CATG 2 cut(s) 219, 380
PfoI TCCNGGA 1 cut(s) 269
PleI GAGTC 2 cut(s) 123, 265
PpsI GAGTC 2 cut(s) 123, 265
Psp6I CCWGG 1 cut(s) 269
PspGI CCWGG 1 cut(s) 269
RsaI GTAC 3 cut(s) 227, 253, 368
RsaNI GTAC 3 cut(s) 226, 252, 367
SaqAI TTAA 5 cut(s) 24, 29, 210, 329, 356
Sau3AI GATC 2 cut(s) 55, 361
ScaI AGTACT 1 cut(s) 253
SchI GAGTC 2 cut(s) 123, 266
ScrFI CCNGG 1 cut(s) 271
SduI GDGCHC 1 cut(s) 8
SetI ASST 2 cut(s) 41, 197
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 5 cut(s) 26, 94, 155, 204, 240
SspMI CTAG 1 cut(s) 388
StyD4I CCNGG 1 cut(s) 269
TaaI ACNGT 1 cut(s) 10
TaiI ACGT 1 cut(s) 41
TasI AATT 5 cut(s) 26, 94, 155, 204, 240
TatI WGTACW 2 cut(s) 251, 366
Tru1I TTAA 5 cut(s) 24, 29, 210, 329, 356
Tru9I TTAA 5 cut(s) 24, 29, 210, 329, 356
TscAI CASTG 1 cut(s) 13
TspRI CASTG 1 cut(s) 13
Vha464I CTTAAG 1 cut(s) 209
VneI GTGCAC 1 cut(s) 4
XapI RAATTY 2 cut(s) 94, 155
XmiI GTMKAC 1 cut(s) 122
XspI CTAG 1 cut(s) 388
ZrmI AGTACT 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.