Rh7CG292300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Reverse (-)
29841449 .. 29841838
390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG292300.1

Sequence Viewer

Length: 390 bp
ATGTGCGCTGTTTCAATAATGATTAAACTTTTACACCTGTTGATGGTTTGGATCATTATGTGCAGTATTCACTTTGAATGTTTACGAAGTTTAGCAACTCTTCCCCATATTTTGTCTGCACGACTCATCTCACCTGCATTTGCTTGTAAATTTTTATCTCAGGGTGTGCTGGGCTTGGAACTAAGGAGCTGTGATATATATCTCAAGACATGGAGCAAGTACGCCTTTTGTCAAATTGCCACCAGTACCGAGTCTTTTCTTTCCAGGAAGTGCTTGACTGGAGATTTCTTGTCCTTGGAGATTTTCTTCTGGTTTCCTTTGTTAATTGCACTTAGTGGTCAGTTCCTCTTAGATGATCAGTACAGGAGACGTGATGCTATCTACTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.9

Weight (kDa)

8.52

Isoelectric Point (pI)

57.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019711)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g23911
prunus_persica Prupe.5G021200_v2.0.a1
rosa_rugosa Rorug07G0141300
rosa_samantha Rh2DG304200 Rh7AG273100 Rh7BG268500 Rh7CG292300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 142
Acc36I ACCTGC 1 cut(s) 142
AclWI GGATC 1 cut(s) 59
AcsI RAATTY 1 cut(s) 149
AdeI CACNNNGTG 1 cut(s) 335
AfaI GTAC 3 cut(s) 221, 247, 362
AfiI CCNNNNNNNGG 1 cut(s) 43
AgsI TTSAA 2 cut(s) 15, 77
AjiI CACGTC 1 cut(s) 371
AjnI CCWGG 1 cut(s) 263
AluBI AGCT 1 cut(s) 189
AluI AGCT 1 cut(s) 189
Alw26I GTCTC 1 cut(s) 361
AlwI GGATC 1 cut(s) 59
ApoI RAATTY 1 cut(s) 149
AspLEI GCGC 1 cut(s) 8
AsuHPI GGTGA 1 cut(s) 123
BccI CCATC 1 cut(s) 37
BciT130I CCWGG 1 cut(s) 265
BclI TGATCA 1 cut(s) 355
BcoDI GTCTC 1 cut(s) 361
BfuAI ACCTGC 1 cut(s) 142
Bme1390I CCNGG 1 cut(s) 265
BmgBI CACGTC 1 cut(s) 371
BmrFI CCNGG 1 cut(s) 265
BmsI GCATC 1 cut(s) 364
BpmI CTGGAG 1 cut(s) 300
BpuEI CTTGAG 1 cut(s) 188
BsaBI GATNNNNATC 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 294
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse1I ACTGG 2 cut(s) 243, 283
Bse8I GATNNNNATC 1 cut(s) 198
BseBI CCWGG 1 cut(s) 265
BseDI CCNNGG 1 cut(s) 294
BseJI GATNNNNATC 1 cut(s) 198
BseLI CCNNNNNNNGG 1 cut(s) 43
BseMII CTCAG 1 cut(s) 173
BseNI ACTGG 2 cut(s) 243, 283
BseYI CCCAGC 1 cut(s) 169
BsgI GTGCAG 2 cut(s) 82, 102
BslI CCNNNNNNNGG 1 cut(s) 43
BsmAI GTCTC 1 cut(s) 361
BsmBI CGTCTC 1 cut(s) 361
Bsp143I GATC 2 cut(s) 51, 355
BspCNI CTCAG 1 cut(s) 172
BspMI ACCTGC 1 cut(s) 142
BspPI GGATC 1 cut(s) 59
BsrI ACTGG 2 cut(s) 243, 283
BssECI CCNNGG 1 cut(s) 294
BssMI GATC 2 cut(s) 51, 355
BssT1I CCWWGG 1 cut(s) 294
Bst2UI CCWGG 1 cut(s) 265
Bst6I CTCTTC 1 cut(s) 105
BstDEI CTNAG 4 cut(s) 159, 182, 332, 349
BstHHI GCGC 1 cut(s) 8
BstKTI GATC 2 cut(s) 54, 358
BstMAI GTCTC 1 cut(s) 361
BstMBI GATC 2 cut(s) 51, 355
BstNI CCWGG 1 cut(s) 265
BstSCI CCNGG 1 cut(s) 263
BtrI CACGTC 1 cut(s) 371
BveI ACCTGC 1 cut(s) 142
CfoI GCGC 1 cut(s) 8
Csp6I GTAC 3 cut(s) 220, 246, 361
CviAII CATG 1 cut(s) 210
CviJI RGCY 2 cut(s) 174, 189
CviKI_1 RGCY 2 cut(s) 174, 189
CviQI GTAC 3 cut(s) 220, 246, 361
DdeI CTNAG 4 cut(s) 159, 182, 332, 349
DpnI GATC 2 cut(s) 53, 357
DpnII GATC 2 cut(s) 51, 355
DraIII CACNNNGTG 1 cut(s) 335
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Eco130I CCWWGG 1 cut(s) 294
EcoRII CCWGG 1 cut(s) 263
EcoT14I CCWWGG 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 294
Esp3I CGTCTC 1 cut(s) 361
FaeI CATG 1 cut(s) 213
FaiI YATR 5 cut(s) 59, 108, 197, 199, 211
FalI AAGNNNNNCTT 2 cut(s) 209, 241
FatI CATG 1 cut(s) 209
FbaI TGATCA 1 cut(s) 355
GlaI GCGC 1 cut(s) 7
GsaI CCCAGC 1 cut(s) 173
GsuI CTGGAG 1 cut(s) 300
HhaI GCGC 1 cut(s) 8
Hin1II CATG 1 cut(s) 213
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HinfI GANTC 2 cut(s) 123, 251
HphI GGTGA 1 cut(s) 123
Hpy166II GTNNAC 1 cut(s) 83
Hpy188III TCNNGA 1 cut(s) 205
Hpy8I GTNNAC 1 cut(s) 83
HpyCH4IV ACGT 1 cut(s) 370
HpyCH4V TGCA 4 cut(s) 63, 119, 137, 329
HpyF3I CTNAG 4 cut(s) 159, 182, 332, 349
HpySE526I ACGT 1 cut(s) 370
Hsp92II CATG 1 cut(s) 213
HspAI GCGC 1 cut(s) 6
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 2 cut(s) 51, 355
LmnI GCTCC 2 cut(s) 186, 213
LweI GCATC 1 cut(s) 364
MaeII ACGT 1 cut(s) 370
MalI GATC 2 cut(s) 53, 357
MboI GATC 2 cut(s) 51, 355
MboII GAAGA 2 cut(s) 92, 298
MluCI AATT 3 cut(s) 149, 234, 324
MlyI GAGTC 2 cut(s) 117, 260
MnlI CCTC 1 cut(s) 356
MseI TTAA 2 cut(s) 24, 323
MspR9I CCNGG 1 cut(s) 265
MvaI CCWGG 1 cut(s) 265
NdeII GATC 2 cut(s) 51, 355
NlaIII CATG 1 cut(s) 213
PaqCI CACCTGC 1 cut(s) 142
PfoI TCCNGGA 1 cut(s) 263
PleI GAGTC 2 cut(s) 117, 259
PpsI GAGTC 2 cut(s) 117, 259
Psp6I CCWGG 1 cut(s) 263
PspFI CCCAGC 1 cut(s) 169
PspGI CCWGG 1 cut(s) 263
RsaI GTAC 3 cut(s) 221, 247, 362
RsaNI GTAC 3 cut(s) 220, 246, 361
SaqAI TTAA 2 cut(s) 24, 323
Sau3AI GATC 2 cut(s) 51, 355
SchI GAGTC 2 cut(s) 117, 260
ScrFI CCNGG 1 cut(s) 265
SetI ASST 4 cut(s) 39, 136, 191, 373
SfaNI GCATC 1 cut(s) 364
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 3 cut(s) 149, 234, 324
StyD4I CCNGG 1 cut(s) 263
StyI CCWWGG 1 cut(s) 294
TaiI ACGT 1 cut(s) 373
TasI AATT 3 cut(s) 149, 234, 324
TatI WGTACW 1 cut(s) 360
Tru1I TTAA 2 cut(s) 24, 323
Tru9I TTAA 2 cut(s) 24, 323
XapI RAATTY 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.