FvH4_5g24451

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0017161
Physical Location & Seq
Forward (+)
15808850 .. 15809708
859 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g24451.t1

Sequence Viewer

Length: 468 bp
ATGGCTTCACAATTTCTATGCATAACAGCATCCTGGAATTCTCAATGTAGAAGAAAGTCCACCAAATCAGTATCACACAAGTACGAGAGAATGATAAACTCTTCATCAGTGCGCCATCGGAATTATGGTCATGACCAACACAGCAGCAGGAGCCATGTAAAGTTAGAAAGTAGCAGTCCTCGTTTGGAAAATGGAGATCATGTGAAGAGAAAAAAGAGCAAGTTTACCAAAGGAAGATCTGATGCTCAAGAACATCAGAGGTCAGGCCTGTGGTACGTGACATCTTGTATCAGTCACATCTTAAGGAAGGCAAGAGCATTTTACAATGAGTTCTGCTGCGATGCAATTTTTTATGATGTTGATGACACAACTAGGATGCAAGGATATAATGATGAAGTCATGTTGGTTGATGCATATTTTTCAATCCCAATTATTCCTTTCACCTCCCATGATTATTCTACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

18.07

Weight (kDa)

9.26

Isoelectric Point (pI)

50.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017161)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19430
fragaria_vesca FvH4_5g24451
rosa_chinensis RchiOBHm_Chr7g0214861
rosa_laevigata RLG00000002714
rosa_roxburghii Rroxscaffold_3G00244960
rosa_rugosa Rorug07G0147900
rosa_samantha Rh7AG284700 Rh7BG275600 Rh7BG276200 Rh7BG276600 Rh7CG303900 Rh7DG288200
rosa_wichuraiana Rw7G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 37
AfaI GTAC 2 cut(s) 83, 275
AflII CTTAAG 1 cut(s) 301
AgsI TTSAA 1 cut(s) 423
AjnI CCWGG 1 cut(s) 32
AoxI GGCC 1 cut(s) 265
ApeKI GCWGC 2 cut(s) 144, 336
ApoI RAATTY 1 cut(s) 37
AspLEI GCGC 1 cut(s) 114
AsuHPI GGTGA 1 cut(s) 433
BbvI GCAGC 2 cut(s) 156, 323
BccI CCATC 1 cut(s) 123
BciT130I CCWGG 1 cut(s) 34
BfaI CTAG 1 cut(s) 372
BfrI CTTAAG 1 cut(s) 301
BglII AGATCT 1 cut(s) 236
BisI GCNGC 2 cut(s) 145, 337
BlsI GCNGC 2 cut(s) 146, 338
Bme1390I CCNGG 1 cut(s) 34
BmiI GGNNCC 1 cut(s) 152
BmrFI CCNGG 1 cut(s) 34
BmsI GCATC 5 cut(s) 38, 232, 331, 366, 400
BpuEI CTTGAG 1 cut(s) 231
BsaAI YACGTR 1 cut(s) 277
BsaXI ACNNNNNCTCC 2 cut(s) 186, 216
BseBI CCWGG 1 cut(s) 34
BseGI GGATG 2 cut(s) 29, 381
BseXI GCAGC 2 cut(s) 156, 323
BshFI GGCC 1 cut(s) 267
BsnI GGCC 1 cut(s) 267
Bsp143I GATC 2 cut(s) 196, 236
BspANI GGCC 1 cut(s) 267
BspHI TCATGA 1 cut(s) 130
BspLI GGNNCC 1 cut(s) 152
BspTI CTTAAG 1 cut(s) 301
BssMI GATC 2 cut(s) 196, 236
Bst2UI CCWGG 1 cut(s) 34
Bst6I CTCTTC 2 cut(s) 106, 200
BstAFI CTTAAG 1 cut(s) 301
BstBAI YACGTR 1 cut(s) 277
BstF5I GGATG 2 cut(s) 29, 381
BstHHI GCGC 1 cut(s) 114
BstKTI GATC 2 cut(s) 199, 239
BstMBI GATC 2 cut(s) 196, 236
BstMWI GCNNNNNNNGC 1 cut(s) 150
BstNI CCWGG 1 cut(s) 34
BstSCI CCNGG 1 cut(s) 32
BstV1I GCAGC 2 cut(s) 156, 323
BstX2I RGATCY 1 cut(s) 236
BstYI RGATCY 1 cut(s) 236
BsuRI GGCC 1 cut(s) 267
BtgZI GCGATG 1 cut(s) 354
BtsCI GGATG 2 cut(s) 29, 381
BtsIMutI CAGTG 1 cut(s) 114
CciI TCATGA 1 cut(s) 130
CfoI GCGC 1 cut(s) 114
Csp6I GTAC 2 cut(s) 82, 274
CviAII CATG 5 cut(s) 131, 155, 200, 400, 449
CviJI RGCY 3 cut(s) 5, 153, 267
CviKI_1 RGCY 3 cut(s) 5, 153, 267
CviQI GTAC 2 cut(s) 82, 274
DpnI GATC 2 cut(s) 198, 238
DpnII GATC 2 cut(s) 196, 236
Eam1104I CTCTTC 2 cut(s) 106, 200
EarI CTCTTC 2 cut(s) 106, 200
Eco147I AGGCCT 1 cut(s) 267
EcoRI GAATTC 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 32
EcoT22I ATGCAT 2 cut(s) 23, 415
FaeI CATG 5 cut(s) 134, 158, 203, 403, 452
FatI CATG 5 cut(s) 130, 154, 199, 399, 448
Fnu4HI GCNGC 2 cut(s) 145, 337
FokI GGATG 2 cut(s) 16, 388
Fsp4HI GCNGC 2 cut(s) 145, 337
FspBI CTAG 1 cut(s) 372
GlaI GCGC 1 cut(s) 113
GluI GCNGC 2 cut(s) 145, 337
HaeIII GGCC 1 cut(s) 267
HhaI GCGC 1 cut(s) 114
Hin1II CATG 5 cut(s) 134, 158, 203, 403, 452
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HphI GGTGA 1 cut(s) 433
Hpy166II GTNNAC 2 cut(s) 60, 225
Hpy188I TCNGA 3 cut(s) 120, 241, 258
Hpy188III TCNNGA 2 cut(s) 131, 248
Hpy8I GTNNAC 2 cut(s) 60, 225
HpyAV CCTTC 1 cut(s) 301
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 4 cut(s) 21, 344, 379, 413
HpyF10VI GCNNNNNNNGC 1 cut(s) 150
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 5 cut(s) 134, 158, 203, 403, 452
HspAI GCGC 1 cut(s) 112
Kzo9I GATC 2 cut(s) 196, 236
LmnI GCTCC 1 cut(s) 150
LpnPI CCDG 5 cut(s) 19, 46, 133, 249, 281
Lsp1109I GCAGC 2 cut(s) 156, 323
LweI GCATC 5 cut(s) 38, 232, 331, 366, 400
MaeI CTAG 1 cut(s) 372
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 2 cut(s) 277, 293
MalI GATC 2 cut(s) 198, 238
MboI GATC 2 cut(s) 196, 236
MboII GAAGA 4 cut(s) 63, 93, 217, 246
MflI RGATCY 1 cut(s) 236
MluCI AATT 6 cut(s) 11, 37, 121, 345, 429, 463
MnlI CCTC 3 cut(s) 189, 252, 454
Mph1103I ATGCAT 2 cut(s) 23, 415
MseI TTAA 2 cut(s) 302, 466
MspCI CTTAAG 1 cut(s) 301
MspR9I CCNGG 1 cut(s) 34
MvaI CCWGG 1 cut(s) 34
MwoI GCNNNNNNNGC 1 cut(s) 150
NdeII GATC 2 cut(s) 196, 236
NlaIII CATG 5 cut(s) 134, 158, 203, 403, 452
NlaIV GGNNCC 1 cut(s) 152
NmuCI GTSAC 2 cut(s) 277, 293
NsiI ATGCAT 2 cut(s) 23, 415
PagI TCATGA 1 cut(s) 130
PceI AGGCCT 1 cut(s) 267
PfoI TCCNGGA 1 cut(s) 32
PkrI GCNGC 2 cut(s) 146, 338
Ppu21I YACGTR 1 cut(s) 277
Psp6I CCWGG 1 cut(s) 32
PspGI CCWGG 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 152
PsuI RGATCY 1 cut(s) 236
RsaI GTAC 2 cut(s) 83, 275
RsaNI GTAC 2 cut(s) 82, 274
SaqAI TTAA 2 cut(s) 302, 466
SatI GCNGC 2 cut(s) 145, 337
Sau3AI GATC 2 cut(s) 196, 236
ScrFI CCNGG 1 cut(s) 34
SetI ASST 3 cut(s) 263, 279, 446
SfaNI GCATC 5 cut(s) 38, 232, 331, 366, 400
SmlI CTYRAG 2 cut(s) 246, 301
SmoI CTYRAG 2 cut(s) 246, 301
Sse9I AATT 6 cut(s) 11, 37, 121, 345, 429, 463
SseBI AGGCCT 1 cut(s) 267
SspMI CTAG 1 cut(s) 372
StuI AGGCCT 1 cut(s) 267
StyD4I CCNGG 1 cut(s) 32
TaiI ACGT 1 cut(s) 279
TasI AATT 6 cut(s) 11, 37, 121, 345, 429, 463
Tru1I TTAA 2 cut(s) 302, 466
Tru9I TTAA 2 cut(s) 302, 466
TscAI CASTG 1 cut(s) 114
TseFI GTSAC 2 cut(s) 277, 293
TseI GCWGC 2 cut(s) 144, 336
Tsp45I GTSAC 2 cut(s) 277, 293
TspDTI ATGAA 2 cut(s) 93, 408
TspRI CASTG 1 cut(s) 114
Vha464I CTTAAG 1 cut(s) 301
XapI RAATTY 1 cut(s) 37
XcmI CCANNNNNNNNNTGG 1 cut(s) 122
XspI CTAG 1 cut(s) 372
Zsp2I ATGCAT 2 cut(s) 23, 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.