RLG00000002714

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0017161
Physical Location & Seq
Reverse (-)
38474999 .. 38476174
1176 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002714

Sequence Viewer

Length: 432 bp
ATGAATTCTTCATCAGTGCGCCAGCGGAATTTTGGTCATGGCCAACACGGCAAAAGGAGCCATTTCAAGTTAGAAAGTAGCAGTCCTCGTTTGGAAAATGGAGATCATGTGAAGGGAAAAGAGAACAAGTTTGCCAAAGGAAGATCTGAGGCTCAAGAACACCGGGGGTTAGGCTTGTGGTACGTGACATCTTGTATCAGTCACATCTTAAGAAAGGCGAGAGCATTTTACAACGAGTTCTGCTGTGATGCAATATCTGATGGTGGTGATGACACAACTAGGAGGCAAGGATATAATTATGAAGTCATGTTGGACGCTATGTTAGTTCGTGAAGAGAGGGGAATTCAAGTGTGGACCTATTCCAACAAAGAGGAGAAATACCACTATGGCCTTCTTTCGTTTTTTGTGGAAGGTATTAATCGGGGACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

16.53

Weight (kDa)

9.01

Isoelectric Point (pI)

46.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017161)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19430
fragaria_vesca FvH4_5g24451
rosa_chinensis RchiOBHm_Chr7g0214861
rosa_laevigata RLG00000002714
rosa_roxburghii Rroxscaffold_3G00244960
rosa_rugosa Rorug07G0147900
rosa_samantha Rh7AG284700 Rh7BG275600 Rh7BG276200 Rh7BG276600 Rh7CG303900 Rh7DG288200
rosa_wichuraiana Rw7G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 25
AcoI YGGCCR 1 cut(s) 40
AcsI RAATTY 3 cut(s) 4, 28, 342
AfaI GTAC 1 cut(s) 182
AflII CTTAAG 1 cut(s) 208
AgsI TTSAA 2 cut(s) 67, 347
AoxI GGCC 2 cut(s) 40, 388
ApoI RAATTY 3 cut(s) 4, 28, 342
AseI ATTAAT 1 cut(s) 417
AspLEI GCGC 1 cut(s) 21
AspS9I GGNCC 1 cut(s) 354
AsuC2I CCSGG 1 cut(s) 164
AsuHPI GGTGA 1 cut(s) 278
AvaII GGWCC 1 cut(s) 354
BalI TGGCCA 1 cut(s) 42
BccI CCATC 1 cut(s) 254
BceAI ACGGC 1 cut(s) 64
BcnI CCSGG 1 cut(s) 164
BfaI CTAG 1 cut(s) 279
BfrI CTTAAG 1 cut(s) 208
BglI GCCNNNNNGGC 1 cut(s) 48
BglII AGATCT 1 cut(s) 143
Bme1390I CCNGG 1 cut(s) 164
Bme18I GGWCC 1 cut(s) 354
BmgT120I GGNCC 1 cut(s) 354
BmiI GGNNCC 1 cut(s) 59
BmrFI CCNGG 1 cut(s) 164
BmsI GCATC 1 cut(s) 238
BpuEI CTTGAG 1 cut(s) 138
BpuMI CCSGG 1 cut(s) 164
BsaAI YACGTR 1 cut(s) 184
BsaJI CCNNGG 1 cut(s) 163
BsaXI ACNNNNNCTCC 2 cut(s) 93, 123
BseDI CCNNGG 1 cut(s) 163
BseMII CTCAG 1 cut(s) 138
BseRI GAGGAG 1 cut(s) 386
BshFI GGCC 2 cut(s) 42, 390
BsiSI CCGG 1 cut(s) 163
BsnI GGCC 2 cut(s) 42, 390
Bsp143I GATC 2 cut(s) 103, 143
BspACI CCGC 1 cut(s) 25
BspANI GGCC 2 cut(s) 42, 390
BspCNI CTCAG 1 cut(s) 139
BspLI GGNNCC 1 cut(s) 59
BspTI CTTAAG 1 cut(s) 208
BssECI CCNNGG 1 cut(s) 163
BssMI GATC 2 cut(s) 103, 143
Bst4CI ACNGT 1 cut(s) 429
Bst6I CTCTTC 1 cut(s) 327
BstAFI CTTAAG 1 cut(s) 208
BstBAI YACGTR 1 cut(s) 184
BstC8I GCNNGC 1 cut(s) 23
BstDEI CTNAG 1 cut(s) 147
BstHHI GCGC 1 cut(s) 21
BstKTI GATC 2 cut(s) 106, 146
BstMBI GATC 2 cut(s) 103, 143
BstMWI GCNNNNNNNGC 2 cut(s) 48, 57
BstSCI CCNGG 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 143
BstYI RGATCY 1 cut(s) 143
BsuRI GGCC 2 cut(s) 42, 390
BtsIMutI CAGTG 1 cut(s) 21
Cac8I GCNNGC 1 cut(s) 23
CfoI GCGC 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 354
CseI GACGC 1 cut(s) 323
Csp6I GTAC 1 cut(s) 181
CviAII CATG 3 cut(s) 38, 107, 307
CviJI RGCY 5 cut(s) 42, 60, 152, 174, 390
CviKI_1 RGCY 5 cut(s) 42, 60, 152, 174, 390
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 1 cut(s) 147
DpnI GATC 2 cut(s) 105, 145
DpnII GATC 2 cut(s) 103, 143
EaeI YGGCCR 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
Eco47I GGWCC 1 cut(s) 354
EcoRI GAATTC 2 cut(s) 4, 342
FaeI CATG 3 cut(s) 41, 110, 310
FaiI YATR 7 cut(s) 39, 108, 294, 300, 308, 320, 387
FatI CATG 3 cut(s) 37, 106, 306
FspBI CTAG 1 cut(s) 279
GlaI GCGC 1 cut(s) 20
HaeIII GGCC 2 cut(s) 42, 390
HapII CCGG 1 cut(s) 163
HgaI GACGC 1 cut(s) 323
HhaI GCGC 1 cut(s) 21
Hin1II CATG 3 cut(s) 41, 110, 310
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
HpaII CCGG 1 cut(s) 163
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 1 cut(s) 354
Hpy188I TCNGA 2 cut(s) 148, 259
Hpy188III TCNNGA 2 cut(s) 155, 329
Hpy8I GTNNAC 1 cut(s) 354
HpyAV CCTTC 3 cut(s) 106, 401, 404
HpyCH4III ACNGT 1 cut(s) 429
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 1 cut(s) 251
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 57
HpyF3I CTNAG 1 cut(s) 147
HpySE526I ACGT 1 cut(s) 183
Hsp92II CATG 3 cut(s) 41, 110, 310
HspAI GCGC 1 cut(s) 19
Kzo9I GATC 2 cut(s) 103, 143
LmnI GCTCC 1 cut(s) 57
LpnPI CCDG 2 cut(s) 35, 176
LweI GCATC 1 cut(s) 238
MaeI CTAG 1 cut(s) 279
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 2 cut(s) 184, 200
MalI GATC 2 cut(s) 105, 145
MboI GATC 2 cut(s) 103, 143
MboII GAAGA 2 cut(s) 153, 344
MflI RGATCY 1 cut(s) 143
MlsI TGGCCA 1 cut(s) 42
MluCI AATT 4 cut(s) 4, 28, 295, 342
MluNI TGGCCA 1 cut(s) 42
MmeI TCCRAC 2 cut(s) 291, 387
MnlI CCTC 5 cut(s) 96, 142, 276, 330, 364
Mox20I TGGCCA 1 cut(s) 42
MscI TGGCCA 1 cut(s) 42
MseI TTAA 2 cut(s) 209, 417
Msp20I TGGCCA 1 cut(s) 42
MspA1I CMGCKG 1 cut(s) 25
MspCI CTTAAG 1 cut(s) 208
MspI CCGG 1 cut(s) 163
MspR9I CCNGG 1 cut(s) 164
MwoI GCNNNNNNNGC 2 cut(s) 48, 57
NciI CCSGG 1 cut(s) 164
NdeII GATC 2 cut(s) 103, 143
NlaIII CATG 3 cut(s) 41, 110, 310
NlaIV GGNNCC 1 cut(s) 59
NmuCI GTSAC 2 cut(s) 184, 200
Ppu21I YACGTR 1 cut(s) 184
PshBI ATTAAT 1 cut(s) 417
PspN4I GGNNCC 1 cut(s) 59
PspPI GGNCC 1 cut(s) 354
PsuI RGATCY 1 cut(s) 143
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SaqAI TTAA 2 cut(s) 209, 417
Sau3AI GATC 2 cut(s) 103, 143
Sau96I GGNCC 1 cut(s) 354
ScrFI CCNGG 1 cut(s) 164
SetI ASST 3 cut(s) 186, 359, 415
SfaNI GCATC 1 cut(s) 238
SinI GGWCC 1 cut(s) 354
SmlI CTYRAG 2 cut(s) 153, 208
SmoI CTYRAG 2 cut(s) 153, 208
Sse9I AATT 4 cut(s) 4, 28, 295, 342
SsiI CCGC 1 cut(s) 25
SspMI CTAG 1 cut(s) 279
StyD4I CCNGG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 429
TaiI ACGT 1 cut(s) 186
TasI AATT 4 cut(s) 4, 28, 295, 342
Tru1I TTAA 2 cut(s) 209, 417
Tru9I TTAA 2 cut(s) 209, 417
TscAI CASTG 1 cut(s) 21
TseFI GTSAC 2 cut(s) 184, 200
Tsp45I GTSAC 2 cut(s) 184, 200
TspDTI ATGAA 2 cut(s) 17, 315
TspRI CASTG 1 cut(s) 21
Vha464I CTTAAG 1 cut(s) 208
VpaK11BI GGWCC 1 cut(s) 354
VspI ATTAAT 1 cut(s) 417
XapI RAATTY 3 cut(s) 4, 28, 342
XcmI CCANNNNNNNNNTGG 1 cut(s) 29
XspI CTAG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.