Rh7DG288200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0017161
Physical Location & Seq
Forward (+)
32213408 .. 32213875
468 bp
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UTR
Exon/CDS
Intron
Rh7DG288200.1

Sequence Viewer

Length: 468 bp
ATGACTTCACTTCTATGCATAACAGGATCCTGGAATTCCCAATGTAGAAGAAAGTCCACCAAAACAGTATCACACAAATATGCAAGAGTGATGAATTCTTCATCAGTGAGCCAGCGGAATTTTGGTCATGACCAACACGGCAGAAGGAGCCATGTCAAGTTAGAAAGTAGCAGTCCTCGTTTGGAAAATGGAGATCATGTGAAGGGAAAAAAGAACAAGTTTGCCAAAGGAAGATCTGAGGCTCAAGAACACCGGGGGTTAAGCTTGTGGTACGTGACATCTTGTATCAGTCACATCTTAAGGAAGGCGAGAGCATTTTACAACGAGTTCTGCTGTGATGCAATAACTGATGGTGGTGATGACACAACTAGGAGGCAAGGATATAATCATGAAGTCATGTTGGTTGATCCATATTTTTCAATCCCAATTACTCCTTTTACCTCCCATGATTATTCTACCAAGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.75

Weight (kDa)

9.58

Isoelectric Point (pI)

51.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017161)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19430
fragaria_vesca FvH4_5g24451
rosa_chinensis RchiOBHm_Chr7g0214861
rosa_laevigata RLG00000002714
rosa_roxburghii Rroxscaffold_3G00244960
rosa_rugosa Rorug07G0147900
rosa_samantha Rh7AG284700 Rh7BG275600 Rh7BG276200 Rh7BG276600 Rh7CG303900 Rh7DG288200
rosa_wichuraiana Rw7G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 115
AclWI GGATC 3 cut(s) 21, 34, 401
AcsI RAATTY 3 cut(s) 34, 94, 118
AfaI GTAC 2 cut(s) 272, 464
AflII CTTAAG 1 cut(s) 298
AgsI TTSAA 1 cut(s) 420
AjnI CCWGG 1 cut(s) 29
AluBI AGCT 1 cut(s) 264
AluI AGCT 1 cut(s) 264
AlwI GGATC 3 cut(s) 21, 34, 401
ApoI RAATTY 3 cut(s) 34, 94, 118
AsuC2I CCSGG 1 cut(s) 254
AsuHPI GGTGA 1 cut(s) 368
BamHI GGATCC 1 cut(s) 26
BccI CCATC 1 cut(s) 344
BceAI ACGGC 1 cut(s) 154
BciT130I CCWGG 1 cut(s) 31
BcnI CCSGG 1 cut(s) 254
BfaI CTAG 1 cut(s) 369
BfrI CTTAAG 1 cut(s) 298
BglII AGATCT 1 cut(s) 233
BmcAI AGTACT 1 cut(s) 464
Bme1390I CCNGG 2 cut(s) 31, 254
BmiI GGNNCC 2 cut(s) 28, 149
BmrFI CCNGG 2 cut(s) 31, 254
BmsI GCATC 1 cut(s) 328
BpuEI CTTGAG 1 cut(s) 228
BpuMI CCSGG 1 cut(s) 254
BsaAI YACGTR 1 cut(s) 274
BsaJI CCNNGG 1 cut(s) 253
BsaXI ACNNNNNCTCC 2 cut(s) 183, 213
BseBI CCWGG 1 cut(s) 31
BseDI CCNNGG 1 cut(s) 253
BseMII CTCAG 1 cut(s) 228
BsiSI CCGG 1 cut(s) 253
Bsp143I GATC 4 cut(s) 26, 193, 233, 406
BspACI CCGC 1 cut(s) 115
BspCNI CTCAG 1 cut(s) 229
BspHI TCATGA 2 cut(s) 127, 388
BspLI GGNNCC 2 cut(s) 28, 149
BspPI GGATC 3 cut(s) 21, 34, 401
BspTI CTTAAG 1 cut(s) 298
BssECI CCNNGG 1 cut(s) 253
BssMI GATC 4 cut(s) 26, 193, 233, 406
Bst2UI CCWGG 1 cut(s) 31
Bst4CI ACNGT 1 cut(s) 67
BstAFI CTTAAG 1 cut(s) 298
BstBAI YACGTR 1 cut(s) 274
BstC8I GCNNGC 1 cut(s) 113
BstDEI CTNAG 1 cut(s) 237
BstKTI GATC 4 cut(s) 29, 196, 236, 409
BstMBI GATC 4 cut(s) 26, 193, 233, 406
BstMWI GCNNNNNNNGC 1 cut(s) 147
BstNI CCWGG 1 cut(s) 31
BstSCI CCNGG 2 cut(s) 29, 252
BstX2I RGATCY 2 cut(s) 26, 233
BstYI RGATCY 2 cut(s) 26, 233
BtsIMutI CAGTG 1 cut(s) 111
Cac8I GCNNGC 1 cut(s) 113
CciI TCATGA 2 cut(s) 127, 388
Csp6I GTAC 2 cut(s) 271, 463
CviAII CATG 6 cut(s) 128, 152, 197, 389, 397, 446
CviJI RGCY 4 cut(s) 111, 150, 242, 264
CviKI_1 RGCY 4 cut(s) 111, 150, 242, 264
CviQI GTAC 2 cut(s) 271, 463
DdeI CTNAG 1 cut(s) 237
DpnI GATC 4 cut(s) 28, 195, 235, 408
DpnII GATC 4 cut(s) 26, 193, 233, 406
EcoRI GAATTC 2 cut(s) 34, 94
EcoRII CCWGG 1 cut(s) 29
EcoT22I ATGCAT 1 cut(s) 20
FaeI CATG 6 cut(s) 131, 155, 200, 392, 400, 449
FatI CATG 6 cut(s) 127, 151, 196, 388, 396, 445
FspBI CTAG 1 cut(s) 369
HapII CCGG 1 cut(s) 253
Hin1II CATG 6 cut(s) 131, 155, 200, 392, 400, 449
HindIII AAGCTT 1 cut(s) 262
HpaII CCGG 1 cut(s) 253
HphI GGTGA 1 cut(s) 368
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 1 cut(s) 238
Hpy188III TCNNGA 3 cut(s) 128, 245, 389
Hpy8I GTNNAC 1 cut(s) 57
HpyAV CCTTC 3 cut(s) 138, 196, 298
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 3 cut(s) 18, 83, 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 147
HpyF3I CTNAG 1 cut(s) 237
HpySE526I ACGT 1 cut(s) 273
Hsp92II CATG 6 cut(s) 131, 155, 200, 392, 400, 449
Kzo9I GATC 4 cut(s) 26, 193, 233, 406
LmnI GCTCC 1 cut(s) 147
LpnPI CCDG 5 cut(s) 9, 16, 43, 125, 266
LweI GCATC 1 cut(s) 328
MaeI CTAG 1 cut(s) 369
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 2 cut(s) 274, 290
MalI GATC 4 cut(s) 28, 195, 235, 408
MboI GATC 4 cut(s) 26, 193, 233, 406
MboII GAAGA 3 cut(s) 60, 90, 243
MflI RGATCY 2 cut(s) 26, 233
MluCI AATT 4 cut(s) 34, 94, 118, 426
MnlI CCTC 4 cut(s) 186, 232, 366, 451
Mph1103I ATGCAT 1 cut(s) 20
MseI TTAA 2 cut(s) 260, 299
MslI CAYNNNNRTG 2 cut(s) 13, 78
MspA1I CMGCKG 1 cut(s) 115
MspCI CTTAAG 1 cut(s) 298
MspI CCGG 1 cut(s) 253
MspR9I CCNGG 2 cut(s) 31, 254
MvaI CCWGG 1 cut(s) 31
MwoI GCNNNNNNNGC 1 cut(s) 147
NciI CCSGG 1 cut(s) 254
NdeII GATC 4 cut(s) 26, 193, 233, 406
NlaIII CATG 6 cut(s) 131, 155, 200, 392, 400, 449
NlaIV GGNNCC 2 cut(s) 28, 149
NmuCI GTSAC 2 cut(s) 274, 290
NsiI ATGCAT 1 cut(s) 20
PagI TCATGA 2 cut(s) 127, 388
PfoI TCCNGGA 1 cut(s) 29
Ppu21I YACGTR 1 cut(s) 274
Psp6I CCWGG 1 cut(s) 29
PspGI CCWGG 1 cut(s) 29
PspN4I GGNNCC 2 cut(s) 28, 149
PsuI RGATCY 2 cut(s) 26, 233
RsaI GTAC 2 cut(s) 272, 464
RsaNI GTAC 2 cut(s) 271, 463
RseI CAYNNNNRTG 2 cut(s) 13, 78
SaqAI TTAA 2 cut(s) 260, 299
Sau3AI GATC 4 cut(s) 26, 193, 233, 406
ScaI AGTACT 1 cut(s) 464
ScrFI CCNGG 2 cut(s) 31, 254
SetI ASST 3 cut(s) 266, 276, 443
SfaNI GCATC 1 cut(s) 328
SmiMI CAYNNNNRTG 2 cut(s) 13, 78
SmlI CTYRAG 2 cut(s) 243, 298
SmoI CTYRAG 2 cut(s) 243, 298
Sse9I AATT 4 cut(s) 34, 94, 118, 426
SsiI CCGC 1 cut(s) 115
SspMI CTAG 1 cut(s) 369
StyD4I CCNGG 2 cut(s) 29, 252
TaaI ACNGT 1 cut(s) 67
TaiI ACGT 1 cut(s) 276
TasI AATT 4 cut(s) 34, 94, 118, 426
TatI WGTACW 1 cut(s) 462
Tru1I TTAA 2 cut(s) 260, 299
Tru9I TTAA 2 cut(s) 260, 299
TscAI CASTG 1 cut(s) 111
TseFI GTSAC 2 cut(s) 274, 290
Tsp45I GTSAC 2 cut(s) 274, 290
TspDTI ATGAA 3 cut(s) 90, 107, 405
TspRI CASTG 1 cut(s) 111
Vha464I CTTAAG 1 cut(s) 298
XapI RAATTY 3 cut(s) 34, 94, 118
XcmI CCANNNNNNNNNTGG 1 cut(s) 119
XspI CTAG 1 cut(s) 369
ZrmI AGTACT 1 cut(s) 464
Zsp2I ATGCAT 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.