FvH4_5g25325

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0018849
Physical Location & Seq
Reverse (-)
16872035 .. 16874930
2896 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g25325.t1

Sequence Viewer

Length: 1083 bp
ATGGGGGACAACGGAAACTTTCCTACACTCTCTCTTCATGATGTGTCTGGTGGTGTTTTGGAAGAGTCTGGTATTTATGATGTTGATTATACTAAATACACTAATGACGAATCGTATGAAAATGAAGACAATAATGAGATAGAGGAGGACCCTGATGATAGAGATTTTTGGATTGATGAGCATTATGTACACAATGTAGAAGAAGATTTGAAGCAATTTGAGAAGATTGTCGTAGATGAAAGACCATATGATCATCATGTAGAATTTGGAGAAGATTCATCTGATTACGAAGGTAGTGATGACCTAGGAAGTGTTGATAGCTCCTCGTCTGATGATGAAACTCAAGTGAGAAGGCTCAAAAGAAACACTCCGAAGTTCAAAACATATAGGAGGGAAATTGATTTGAGGCGTCCCCAAATTACATTGGGATTAGAGTTTCCTAGTATGAAGGAATGTAGAGAGGCTATAAGAGAGTATGCAATATGCATTGGGAAGGCCTTAACATTTGCAAAAAACTTCCCACATAGGGTGAAGGAGAATGAGATTAGATTGAACCCTAAGATGAAGGTTGGTGATTTTATTACTATAGTGAAGGACAAGTATGGCATTATAGTGACCAAAGATCAACGAGCCATTAGACCTCCAAAATATCACAAACAACCTGGAAGACCAAAGAAAAGCAGGATTAGAGAGGCAAGTGAGATCCGCAAGGGTGCAACCAAGTTGCCAAAATACAATGTTATTATCATTTGCCGGAGATGTGGGGGTGAAGGCCACAATAGAGCAACATGTCCTCAGAATTTGGTTGAACAAGTTCAAGGTAATCTCTCCTCACAGACACCAACTCAAGCGAGCACGTCAACACCAGCCAACACACCAATTCAAGCTAATGTGACCTCAAGAGCACAAACTCAAGGTATGTATGGAGGTAGAGCTGGTAGAGGAGCTGGCAAAGGAGGTGCGCGAAGAGGTGGAACTGGCAGAGGAGGTGCGCCAGGAGGTGGAGCTGACAGAGGAAGTGCACGAGGAGGTAGAACTACACACTCTTCAGTAGGTACACCATCAAGGCCATGGAGGCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

361

Amino Acids

40.17

Weight (kDa)

8.15

Isoelectric Point (pI)

42.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018849)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g25325 FvH4_5g39730 FvH4_5g39730 FvH4_5g39730 FvH4_6g08192
pyrus_communis pycom11g08490
rosa_laevigata RLG00000012064
rosa_samantha Rh3BG237500
rosa_wichuraiana Rw5G032830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1001
AccII CGCG 1 cut(s) 964
AciI CCGC 1 cut(s) 706
AclWI GGATC 1 cut(s) 697
AcsI RAATTY 2 cut(s) 263, 799
AcuI CTGAAG 1 cut(s) 1032
AcyI GRCGYC 1 cut(s) 409
AfaI GTAC 2 cut(s) 189, 1057
AfiI CCNNNNNNNGG 2 cut(s) 526, 1001
AflIII ACRYGT 1 cut(s) 788
AgsI TTSAA 6 cut(s) 211, 379, 553, 809, 818, 884
AjiI CACGTC 1 cut(s) 858
AjnI CCWGG 2 cut(s) 661, 994
AluBI AGCT 5 cut(s) 321, 887, 935, 947, 1007
AluI AGCT 5 cut(s) 321, 887, 935, 947, 1007
Alw21I GWGCWC 3 cut(s) 857, 907, 1024
Alw44I GTGCAC 1 cut(s) 1020
AlwI GGATC 1 cut(s) 697
AoxI GGCC 4 cut(s) 495, 772, 1067, 1076
ApaLI GTGCAC 1 cut(s) 1020
ApoI RAATTY 2 cut(s) 263, 799
Asp700I GAANNNNTTC 1 cut(s) 813
AspA2I CCTAGG 1 cut(s) 304
AspLEI GCGC 2 cut(s) 964, 994
AspS9I GGNCC 1 cut(s) 148
AsuHPI GGTGA 3 cut(s) 541, 584, 779
AvaII GGWCC 1 cut(s) 148
AvrII CCTAGG 1 cut(s) 304
BaeGI GKGCMC 1 cut(s) 1024
BauI CACGAG 1 cut(s) 1023
BbsI GAAGAC 2 cut(s) 132, 673
Bbv12I GWGCWC 3 cut(s) 857, 907, 1024
BccI CCATC 1 cut(s) 1069
BceAI ACGGC 1 cut(s) 1063
BciT130I CCWGG 2 cut(s) 663, 996
BclI TGATCA 1 cut(s) 250
BfaI CTAG 2 cut(s) 305, 441
BfmI CTRYAG 1 cut(s) 585
BglI GCCNNNNNGGC 1 cut(s) 1075
BlnI CCTAGG 1 cut(s) 304
Bme1390I CCNGG 2 cut(s) 663, 996
Bme18I GGWCC 1 cut(s) 148
BmgBI CACGTC 1 cut(s) 858
BmgT120I GGNCC 1 cut(s) 148
BmiI GGNNCC 1 cut(s) 150
BmrFI CCNGG 2 cut(s) 663, 996
BpiI GAAGAC 2 cut(s) 132, 673
BpuEI CTTGAG 4 cut(s) 327, 831, 883, 897
BsaHI GRCGYC 1 cut(s) 409
BsaJI CCNNGG 2 cut(s) 304, 1070
Bsc4I CCNNNNNNNGG 2 cut(s) 526, 1001
Bse1I ACTGG 1 cut(s) 982
BseBI CCWGG 2 cut(s) 663, 996
BseDI CCNNGG 2 cut(s) 304, 1070
BseLI CCNNNNNNNGG 2 cut(s) 526, 1001
BseMII CTCAG 1 cut(s) 809
BseNI ACTGG 1 cut(s) 982
BseRI GAGGAG 6 cut(s) 158, 313, 820, 957, 999, 1041
BseSI GKGCMC 1 cut(s) 1024
Bsh1236I CGCG 1 cut(s) 964
BshFI GGCC 4 cut(s) 497, 774, 1069, 1078
BsiHKAI GWGCWC 3 cut(s) 857, 907, 1024
BsiSI CCGG 1 cut(s) 754
BslFI GGGAC 2 cut(s) 20, 396
BslI CCNNNNNNNGG 2 cut(s) 526, 1001
BsmFI GGGAC 2 cut(s) 20, 396
BsnI GGCC 4 cut(s) 497, 774, 1069, 1078
Bsp1286I GDGCHC 3 cut(s) 857, 907, 1024
Bsp1407I TGTACA 1 cut(s) 187
Bsp143I GATC 3 cut(s) 250, 622, 702
Bsp19I CCATGG 1 cut(s) 1070
BspACI CCGC 1 cut(s) 706
BspANI GGCC 4 cut(s) 497, 774, 1069, 1078
BspCNI CTCAG 1 cut(s) 808
BspFNI CGCG 1 cut(s) 964
BspHI TCATGA 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 150
BspPI GGATC 1 cut(s) 697
BsrGI TGTACA 1 cut(s) 187
BsrI ACTGG 1 cut(s) 982
BssECI CCNNGG 2 cut(s) 304, 1070
BssMI GATC 3 cut(s) 250, 622, 702
BssNI GRCGYC 1 cut(s) 409
BssSI CACGAG 1 cut(s) 1023
BssT1I CCWWGG 2 cut(s) 304, 1070
Bst2BI CACGAG 1 cut(s) 1023
Bst2UI CCWGG 2 cut(s) 663, 996
Bst6I CTCTTC 4 cut(s) 39, 57, 961, 1051
BstACI GRCGYC 1 cut(s) 409
BstAUI TGTACA 1 cut(s) 187
BstC8I GCNNGC 2 cut(s) 853, 949
BstDEI CTNAG 2 cut(s) 558, 795
BstDSI CCRYGG 1 cut(s) 1070
BstFNI CGCG 1 cut(s) 964
BstHHI GCGC 2 cut(s) 964, 994
BstKTI GATC 3 cut(s) 253, 625, 705
BstMBI GATC 3 cut(s) 250, 622, 702
BstMWI GCNNNNNNNGC 1 cut(s) 1075
BstNI CCWGG 2 cut(s) 663, 996
BstNSI RCATGY 1 cut(s) 792
BstSCI CCNGG 2 cut(s) 661, 994
BstSFI CTRYAG 1 cut(s) 585
BstSLI GKGCMC 1 cut(s) 1024
BstUI CGCG 1 cut(s) 964
BstV2I GAAGAC 2 cut(s) 132, 673
BstX2I RGATCY 1 cut(s) 702
BstYI RGATCY 1 cut(s) 702
BsuRI GGCC 4 cut(s) 497, 774, 1069, 1078
BtgI CCRYGG 1 cut(s) 1070
BtrI CACGTC 1 cut(s) 858
Cac8I GCNNGC 2 cut(s) 853, 949
CciI TCATGA 1 cut(s) 37
CfoI GCGC 2 cut(s) 964, 994
Cfr13I GGNCC 1 cut(s) 148
CseI GACGC 1 cut(s) 398
Csp6I GTAC 2 cut(s) 188, 1056
CviAII CATG 4 cut(s) 38, 257, 789, 1071
CviQI GTAC 2 cut(s) 188, 1056
DdeI CTNAG 2 cut(s) 558, 795
DpnI GATC 3 cut(s) 252, 624, 704
DpnII GATC 3 cut(s) 250, 622, 702
Eam1104I CTCTTC 4 cut(s) 39, 57, 961, 1051
EarI CTCTTC 4 cut(s) 39, 57, 961, 1051
Eco130I CCWWGG 2 cut(s) 304, 1070
Eco147I AGGCCT 1 cut(s) 497
Eco47I GGWCC 1 cut(s) 148
Eco57I CTGAAG 1 cut(s) 1032
EcoO109I RGGNCCY 1 cut(s) 148
EcoRII CCWGG 2 cut(s) 661, 994
EcoT14I CCWWGG 2 cut(s) 304, 1070
EcoT22I ATGCAT 1 cut(s) 488
ErhI CCWWGG 2 cut(s) 304, 1070
FaeI CATG 4 cut(s) 41, 260, 792, 1074
FaqI GGGAC 2 cut(s) 20, 396
FatI CATG 4 cut(s) 37, 256, 788, 1070
FauNDI CATATG 1 cut(s) 247
FbaI TGATCA 1 cut(s) 250
FspBI CTAG 2 cut(s) 305, 441
GlaI GCGC 2 cut(s) 963, 993
HaeIII GGCC 4 cut(s) 497, 774, 1069, 1078
HapII CCGG 1 cut(s) 754
HgaI GACGC 1 cut(s) 398
HhaI GCGC 2 cut(s) 964, 994
Hin1I GRCGYC 1 cut(s) 409
Hin1II CATG 4 cut(s) 41, 260, 792, 1074
Hin6I GCGC 2 cut(s) 962, 992
HinP1I GCGC 2 cut(s) 962, 992
HincII GTYRAC 1 cut(s) 861
HindII GTYRAC 1 cut(s) 861
HinfI GANTC 3 cut(s) 65, 110, 275
HpaII CCGG 1 cut(s) 754
HphI GGTGA 3 cut(s) 541, 584, 779
Hpy166II GTNNAC 4 cut(s) 190, 861, 1022, 1058
Hpy188I TCNGA 4 cut(s) 283, 331, 372, 798
Hpy188III TCNNGA 2 cut(s) 38, 900
Hpy8I GTNNAC 4 cut(s) 190, 861, 1022, 1058
HpyAV CCTTC 8 cut(s) 284, 345, 442, 487, 526, 559, 586, 764
HpyCH4IV ACGT 1 cut(s) 857
HpyCH4V TGCA 5 cut(s) 479, 486, 509, 716, 1022
HpyF10VI GCNNNNNNNGC 1 cut(s) 1075
HpyF3I CTNAG 2 cut(s) 558, 795
HpySE526I ACGT 1 cut(s) 857
Hsp92I GRCGYC 1 cut(s) 409
Hsp92II CATG 4 cut(s) 41, 260, 792, 1074
HspAI GCGC 2 cut(s) 962, 992
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 3 cut(s) 250, 622, 702
LmnI GCTCC 3 cut(s) 326, 944, 1004
MaeI CTAG 2 cut(s) 305, 441
MaeII ACGT 1 cut(s) 857
MaeIII GTNAC 2 cut(s) 613, 892
MalI GATC 3 cut(s) 252, 624, 704
MboI GATC 3 cut(s) 250, 622, 702
MflI RGATCY 1 cut(s) 702
MhlI GDGCHC 3 cut(s) 857, 907, 1024
MluCI AATT 6 cut(s) 215, 263, 396, 417, 799, 879
MlyI GAGTC 1 cut(s) 74
Mph1103I ATGCAT 1 cut(s) 488
MroXI GAANNNNTTC 1 cut(s) 813
MseI TTAA 1 cut(s) 500
MslI CAYNNNNRTG 1 cut(s) 611
MspI CCGG 1 cut(s) 754
MspR9I CCNGG 2 cut(s) 663, 996
MvaI CCWGG 2 cut(s) 663, 996
MvnI CGCG 1 cut(s) 964
MwoI GCNNNNNNNGC 1 cut(s) 1075
NcoI CCATGG 1 cut(s) 1070
NdeI CATATG 1 cut(s) 247
NdeII GATC 3 cut(s) 250, 622, 702
NlaIII CATG 4 cut(s) 41, 260, 792, 1074
NlaIV GGNNCC 1 cut(s) 150
NmuCI GTSAC 2 cut(s) 613, 892
NsiI ATGCAT 1 cut(s) 488
NspI RCATGY 1 cut(s) 792
PagI TCATGA 1 cut(s) 37
PceI AGGCCT 1 cut(s) 497
PciI ACATGT 1 cut(s) 788
PdmI GAANNNNTTC 1 cut(s) 813
PfeI GAWTC 2 cut(s) 110, 275
PflMI CCANNNNNTGG 1 cut(s) 1001
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
PpuMI RGGWCCY 1 cut(s) 148
PscI ACATGT 1 cut(s) 788
Psp5II RGGWCCY 1 cut(s) 148
Psp6I CCWGG 2 cut(s) 661, 994
PspGI CCWGG 2 cut(s) 661, 994
PspN4I GGNNCC 1 cut(s) 150
PspPI GGNCC 1 cut(s) 148
PspPPI RGGWCCY 1 cut(s) 148
PsuI RGATCY 1 cut(s) 702
RsaI GTAC 2 cut(s) 189, 1057
RsaNI GTAC 2 cut(s) 188, 1056
RseI CAYNNNNRTG 1 cut(s) 611
SaqAI TTAA 1 cut(s) 500
Sau3AI GATC 3 cut(s) 250, 622, 702
Sau96I GGNCC 1 cut(s) 148
SchI GAGTC 1 cut(s) 74
ScrFI CCNGG 2 cut(s) 663, 996
SduI GDGCHC 3 cut(s) 857, 907, 1024
SfcI CTRYAG 1 cut(s) 585
SfiI GGCCNNNNNGGCC 1 cut(s) 1075
SinI GGWCC 1 cut(s) 148
SmiMI CAYNNNNRTG 1 cut(s) 611
SmlI CTYRAG 4 cut(s) 342, 846, 898, 912
SmoI CTYRAG 4 cut(s) 342, 846, 898, 912
Sse9I AATT 6 cut(s) 215, 263, 396, 417, 799, 879
SseBI AGGCCT 1 cut(s) 497
SsiI CCGC 1 cut(s) 706
SspMI CTAG 2 cut(s) 305, 441
StuI AGGCCT 1 cut(s) 497
StyD4I CCNGG 2 cut(s) 661, 994
StyI CCWWGG 2 cut(s) 304, 1070
TaiI ACGT 1 cut(s) 860
TasI AATT 6 cut(s) 215, 263, 396, 417, 799, 879
TatI WGTACW 1 cut(s) 187
TfiI GAWTC 2 cut(s) 110, 275
Tru1I TTAA 1 cut(s) 500
Tru9I TTAA 1 cut(s) 500
TseFI GTSAC 2 cut(s) 613, 892
Tsp45I GTSAC 2 cut(s) 613, 892
TspDTI ATGAA 8 cut(s) 26, 132, 138, 252, 267, 351, 461, 578
TspGWI ACGGA 1 cut(s) 27
Van91I CCANNNNNTGG 1 cut(s) 1001
VneI GTGCAC 1 cut(s) 1020
VpaK11BI GGWCC 1 cut(s) 148
XapI RAATTY 2 cut(s) 263, 799
XceI RCATGY 1 cut(s) 792
XcmI CCANNNNNNNNNTGG 1 cut(s) 1068
XmaJI CCTAGG 1 cut(s) 304
XmnI GAANNNNTTC 1 cut(s) 813
XspI CTAG 2 cut(s) 305, 441
Zsp2I ATGCAT 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.