FvH4_5g29070

Belongs to the multicopper oxidase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
20173849 .. 20178953
5105 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g29070.t1

Sequence Viewer

Length: 1572 bp
ATGGGAATCAACGGGCAGTTTCCGGGGCCGACAATAAGGGCAACAGTCGGAGACACGGTTGTGGTTGAACTGACCAACAAACTTCACACGGAGGGAGTGGTGATTCACTGGCACGGTATCAGGCAGTTGGGGACACCTTGGGCTGACGGCACAGCTTCCATCTCACAGTGTGCCATCAACCCTGGAGAGACCTTTTATTACAGGTTCAAACTCGATAAGGCCGGAACATACTTTTACCACGGGCACTATGGAATGCAAAGAAGCGCAGGCTTGTACGGATCACTGATAGTGGACGTGGGAGAGGGAGAGAAAGAGCCGTTTCACTACGACGGCGAGTTGAACTTGCTGCTCAGCGACTGGTGGCACGAGAGCGTTCACCACCAAGAAGTTGGCCTCTCTTCCAATCCGATGCGTTGGATTGGTGAACCCCAGAGTTTGTTGATGAATGGGAGGGGCCAATACAACTGTTCTATCGCGGGAGGAGCGCACTATAGCAGCAATTCAAGCAAGTGCAGTTTAGGAGGAGGGGAACAATGCGCCCCCAAAATTCTACATGTTCTTCCCAACAAGATTTACAGGCTCAGAATCGCCAGCACTACTGCCCTTGCTTCCCTCAATCTCGCCATTGGGAATCACAAAATGGTGGTGGTGGAAGCGGATGGAAATTACGTGCAACCATTTGCAGTTGATGACCTGGACATCTACTCCGGCGAGAGCTACTCAGTGCTGATAACCACGAACCAAAACCCTAGGAACAACTACTGGGTTTCAATCGGAGTGAGAGGAAGAGAACCCAAGACTCCACAAGGCCTCACCCTCCTCAATTACAAACCCAACTCAGCCTCCAAGCTCCCCACTTCTCCTCCTCCGGTCACTCCTCTCTGGAACAATTACACCCACAGCAAGTCCTTCACCACCAGCATCCTTGCCCTAATGGGATCTCCAAAGCCCCCCACAACCTTTCACCGTCGGATCACCCTCCTCAACACCCAAAACAAAATCAACGGCGGATACACCAAGTGGGCCATCAACAATGTCTCCCTCTCCCTACCCTCAACTCCTTACCTCGGCTCCATCAAGTACGGCTTAAAGAATGCCTTCAGCACTGTGAACCCGCCGGAGAGCTTTCCGAATGACTACGACGTCATGAAGCCGCCGGTGAACCCCAACACGACCACCGGGAACGGGGTGTACACGATGACACTGAACTCCACGGTGGACGTGATTCTTCAGAATGCGAATGCGCTGAGCGAGAATGTGAGCGAGATACACCCGTGGCATCTTCACGGTCACGACTTCTGGGTGTTGGGTTATGGAGACGGCAAGTTTGATCCCAAGAGAGACGAGAGAAAGTTCAACCTGAAGAACCCGCCGCTGCGGAACTCGGCGGTGATATTTCCATACGGGTGGACGGCTCTGCGGTTCGTGGCGGACAACCCAGGAGTGTGGGCATTCCACTGTCACATTGAGCCGCATTTGCATATGGGGATGGGAGTCGTCTTTGCCCAAGGTGTTCAACATGTCAACAACATACCCAAACAAGCTCTTGCTTGCGGTCTCACTGGAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

524

Amino Acids

57.66

Weight (kDa)

8.36

Isoelectric Point (pI)

32.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 1 - 98 5.5e-38 Multicopper oxidase
Cu-oxidase PF00394 114 - 278 3.5e-43 Multicopper oxidase
Cu-oxidase_2 PF07731 384 - 504 4.7e-36 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011474)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1142
AatII GACGTC 1 cut(s) 1146
AccII CGCG 1 cut(s) 476
AclWI GGATC 4 cut(s) 286, 946, 980, 1325
AcsI RAATTY 1 cut(s) 546
AcuI CTGAAG 3 cut(s) 1084, 1214, 1382
AcyI GRCGYC 1 cut(s) 1143
AdeI CACNNNGTG 2 cut(s) 170, 1020
AfaI GTAC 3 cut(s) 275, 1082, 1193
AfiI CCNNNNNNNGG 2 cut(s) 1067, 1185
AflIII ACRYGT 2 cut(s) 553, 1519
AgsI TTSAA 7 cut(s) 68, 208, 340, 504, 771, 1357, 1517
AjiI CACGTC 2 cut(s) 295, 1222
AjnI CCWGG 3 cut(s) 181, 693, 1438
AleI CACNNNNGTG 1 cut(s) 59
AluBI AGCT 5 cut(s) 155, 717, 850, 1125, 1544
AluI AGCT 5 cut(s) 155, 717, 850, 1125, 1544
Alw26I GTCTC 6 cut(s) 45, 182, 1042, 1311, 1335, 1562
AlwI GGATC 4 cut(s) 286, 946, 980, 1325
AlwNI CAGNNNCTG 1 cut(s) 357
AoxI GGCC 6 cut(s) 26, 219, 391, 454, 808, 1023
ApeKI GCWGC 3 cut(s) 346, 495, 1375
ApoI RAATTY 1 cut(s) 546
ArsI GACNNNNNNTTYG 2 cut(s) 1310, 1342
Asp700I GAANNNNTTC 1 cut(s) 1097
AspA2I CCTAGG 1 cut(s) 749
AspLEI GCGC 4 cut(s) 266, 487, 539, 1246
AspS9I GGNCC 3 cut(s) 26, 454, 1023
AsuC2I CCSGG 2 cut(s) 24, 1180
AsuHPI GGTGA 9 cut(s) 112, 368, 434, 805, 904, 956, 967, 1171, 1402
AvrII CCTAGG 1 cut(s) 749
BaeGI GKGCMC 1 cut(s) 246
BaeI ACNNNNGTAYC 2 cut(s) 1259, 1292
BauI CACGAG 1 cut(s) 365
BbvI GCAGC 3 cut(s) 333, 507, 1362
BccI CCATC 6 cut(s) 167, 182, 653, 1034, 1082, 1483
BceAI ACGGC 7 cut(s) 163, 301, 346, 1021, 1099, 1336, 1428
BciT130I CCWGG 3 cut(s) 183, 695, 1440
BciVI GTATCC 1 cut(s) 1004
BcnI CCSGG 2 cut(s) 24, 1180
BcoDI GTCTC 6 cut(s) 45, 182, 1042, 1311, 1335, 1562
BfaI CTAG 1 cut(s) 750
BfmI CTRYAG 1 cut(s) 490
BfuI GTATCC 1 cut(s) 1004
BisI GCNGC 6 cut(s) 347, 496, 1154, 1373, 1376, 1472
BlnI CCTAGG 1 cut(s) 749
BlpI GCTNAGC 2 cut(s) 350, 1247
BlsI GCNGC 6 cut(s) 348, 497, 1155, 1374, 1377, 1473
Bme1390I CCNGG 5 cut(s) 24, 183, 695, 1180, 1440
BmgBI CACGTC 2 cut(s) 295, 1222
BmgT120I GGNCC 3 cut(s) 26, 454, 1023
BmiI GGNNCC 3 cut(s) 27, 455, 1072
BmrFI CCNGG 5 cut(s) 24, 183, 695, 1180, 1440
BmrI ACTGGG 1 cut(s) 772
BmsI GCATC 3 cut(s) 399, 930, 1288
BmuI ACTGGG 1 cut(s) 772
BplI GAGNNNNNCTC 2 cut(s) 704, 736
BpmI CTGGAG 1 cut(s) 204
Bpu1102I GCTNAGC 2 cut(s) 350, 1247
BpuMI CCSGG 2 cut(s) 24, 1180
BsaAI YACGTR 1 cut(s) 670
BsaHI GRCGYC 1 cut(s) 1143
BsaI GGTCTC 2 cut(s) 182, 1562
BsaWI WCCGGW 1 cut(s) 868
Bsc4I CCNNNNNNNGG 2 cut(s) 1067, 1185
Bse118I RCCGGY 1 cut(s) 1156
Bse1I ACTGG 4 cut(s) 113, 362, 767, 1567
BseBI CCWGG 3 cut(s) 183, 695, 1440
BseGI GGATG 3 cut(s) 664, 921, 1494
BseLI CCNNNNNNNGG 2 cut(s) 1067, 1185
BseMII CTCAG 5 cut(s) 364, 595, 735, 852, 1238
BseNI ACTGG 4 cut(s) 113, 362, 767, 1567
BseRI GAGGAG 7 cut(s) 495, 537, 809, 852, 855, 867, 971
BseSI GKGCMC 1 cut(s) 246
BseXI GCAGC 3 cut(s) 333, 507, 1362
BsgI GTGCAG 1 cut(s) 532
Bsh1236I CGCG 1 cut(s) 476
BshFI GGCC 6 cut(s) 28, 221, 393, 456, 810, 1025
BsiSI CCGG 7 cut(s) 23, 222, 708, 869, 1118, 1157, 1179
BslFI GGGAC 1 cut(s) 145
BslI CCNNNNNNNGG 2 cut(s) 1067, 1185
BsmAI GTCTC 6 cut(s) 45, 182, 1042, 1311, 1335, 1562
BsmBI CGTCTC 2 cut(s) 1311, 1335
BsmFI GGGAC 1 cut(s) 145
BsmI GAATGC 5 cut(s) 258, 1099, 1240, 1246, 1451
BsnI GGCC 6 cut(s) 28, 221, 393, 456, 810, 1025
Bso31I GGTCTC 2 cut(s) 182, 1562
Bsp1286I GDGCHC 1 cut(s) 246
Bsp1407I TGTACA 1 cut(s) 1191
Bsp143I GATC 4 cut(s) 278, 938, 972, 1330
Bsp1720I GCTNAGC 2 cut(s) 350, 1247
BspANI GGCC 6 cut(s) 28, 221, 393, 456, 810, 1025
BspCNI CTCAG 5 cut(s) 363, 594, 734, 851, 1239
BspFNI CGCG 1 cut(s) 476
BspHI TCATGA 1 cut(s) 1146
BspLI GGNNCC 3 cut(s) 27, 455, 1072
BspPI GGATC 4 cut(s) 286, 946, 980, 1325
BspTNI GGTCTC 2 cut(s) 182, 1562
BsrFI RCCGGY 1 cut(s) 1156
BsrGI TGTACA 1 cut(s) 1191
BsrI ACTGG 4 cut(s) 113, 362, 767, 1567
BssAI RCCGGY 1 cut(s) 1156
BssMI GATC 4 cut(s) 278, 938, 972, 1330
BssNI GRCGYC 1 cut(s) 1143
BssSI CACGAG 1 cut(s) 365
BssT1I CCWWGG 3 cut(s) 137, 749, 1507
Bst2BI CACGAG 1 cut(s) 365
Bst2UI CCWGG 3 cut(s) 183, 695, 1440
Bst6I CTCTTC 2 cut(s) 403, 781
BstACI GRCGYC 1 cut(s) 1143
BstAUI TGTACA 1 cut(s) 1191
BstBAI YACGTR 1 cut(s) 670
BstC8I GCNNGC 3 cut(s) 268, 592, 1552
BstDEI CTNAG 5 cut(s) 350, 581, 721, 838, 1247
BstDSI CCRYGG 3 cut(s) 238, 1212, 1274
BstF5I GGATG 3 cut(s) 664, 921, 1494
BstFNI CGCG 1 cut(s) 476
BstHHI GCGC 4 cut(s) 266, 487, 539, 1246
BstKTI GATC 4 cut(s) 281, 941, 975, 1333
BstMAI GTCTC 6 cut(s) 45, 182, 1042, 1311, 1335, 1562
BstMBI GATC 4 cut(s) 278, 938, 972, 1330
BstMWI GCNNNNNNNGC 3 cut(s) 482, 504, 1477
BstNI CCWGG 3 cut(s) 183, 695, 1440
BstNSI RCATGY 2 cut(s) 557, 1523
BstSCI CCNGG 5 cut(s) 22, 181, 693, 1178, 1438
BstSFI CTRYAG 1 cut(s) 490
BstSLI GKGCMC 1 cut(s) 246
BstUI CGCG 1 cut(s) 476
BstV1I GCAGC 3 cut(s) 333, 507, 1362
BstX2I RGATCY 1 cut(s) 938
BstXI CCANNNNNNTGG 3 cut(s) 389, 1407, 1446
BstYI RGATCY 1 cut(s) 938
BsuI GTATCC 1 cut(s) 1004
BsuRI GGCC 6 cut(s) 28, 221, 393, 456, 810, 1025
BtgI CCRYGG 3 cut(s) 238, 1212, 1274
BtrI CACGTC 2 cut(s) 295, 1222
BtsCI GGATG 3 cut(s) 664, 921, 1494
BtsIMutI CAGTG 8 cut(s) 106, 173, 281, 729, 1104, 1202, 1456, 1560
Cac8I GCNNGC 3 cut(s) 268, 592, 1552
CaiI CAGNNNCTG 1 cut(s) 357
CciI TCATGA 1 cut(s) 1146
CfoI GCGC 4 cut(s) 266, 487, 539, 1246
Cfr10I RCCGGY 1 cut(s) 1156
Cfr13I GGNCC 3 cut(s) 26, 454, 1023
Csp6I GTAC 3 cut(s) 274, 1081, 1192
CviAII CATG 3 cut(s) 554, 1147, 1520
CviQI GTAC 3 cut(s) 274, 1081, 1192
DdeI CTNAG 5 cut(s) 350, 581, 721, 838, 1247
DpnI GATC 4 cut(s) 280, 940, 974, 1332
DpnII GATC 4 cut(s) 278, 938, 972, 1330
DraIII CACNNNGTG 2 cut(s) 170, 1020
DrdI GACNNNNNNGTC 1 cut(s) 1142
DseDI GACNNNNNNGTC 1 cut(s) 1142
Eam1104I CTCTTC 2 cut(s) 403, 781
EarI CTCTTC 2 cut(s) 403, 781
EciI GGCGGA 2 cut(s) 1023, 1445
Eco130I CCWWGG 3 cut(s) 137, 749, 1507
Eco147I AGGCCT 1 cut(s) 810
Eco31I GGTCTC 2 cut(s) 182, 1562
Eco57I CTGAAG 3 cut(s) 1084, 1214, 1382
EcoRII CCWGG 3 cut(s) 181, 693, 1438
EcoT14I CCWWGG 3 cut(s) 137, 749, 1507
ErhI CCWWGG 3 cut(s) 137, 749, 1507
Esp3I CGTCTC 2 cut(s) 1311, 1335
FaeI CATG 3 cut(s) 557, 1150, 1523
FalI AAGNNNNNCTT 4 cut(s) 1070, 1102, 1082, 1114
FaqI GGGAC 1 cut(s) 145
FatI CATG 3 cut(s) 553, 1146, 1519
FauI CCCGC 3 cut(s) 469, 1122, 1377
FauNDI CATATG 1 cut(s) 1482
Fnu4HI GCNGC 6 cut(s) 347, 496, 1154, 1373, 1376, 1472
FokI GGATG 3 cut(s) 671, 908, 1501
Fsp4HI GCNGC 6 cut(s) 347, 496, 1154, 1373, 1376, 1472
FspBI CTAG 1 cut(s) 750
GlaI GCGC 4 cut(s) 265, 486, 538, 1245
GluI GCNGC 6 cut(s) 347, 496, 1154, 1373, 1376, 1472
GsuI CTGGAG 1 cut(s) 204
HaeIII GGCC 6 cut(s) 28, 221, 393, 456, 810, 1025
HapII CCGG 7 cut(s) 23, 222, 708, 869, 1118, 1157, 1179
HhaI GCGC 4 cut(s) 266, 487, 539, 1246
Hin1I GRCGYC 1 cut(s) 1143
Hin1II CATG 3 cut(s) 557, 1150, 1523
Hin6I GCGC 4 cut(s) 264, 485, 537, 1244
HinP1I GCGC 4 cut(s) 264, 485, 537, 1244
HincII GTYRAC 1 cut(s) 1525
HindII GTYRAC 1 cut(s) 1525
HinfI GANTC 7 cut(s) 6, 103, 585, 631, 799, 1225, 1494
HpaII CCGG 7 cut(s) 23, 222, 708, 869, 1118, 1157, 1179
HphI GGTGA 9 cut(s) 112, 368, 434, 805, 904, 956, 967, 1171, 1402
Hpy188I TCNGA 7 cut(s) 50, 408, 584, 776, 972, 1131, 1233
Hpy188III TCNNGA 3 cut(s) 883, 1147, 1292
Hpy99I CGWCG 3 cut(s) 332, 972, 1145
HpyAV CCTTC 2 cut(s) 919, 1108
HpyCH4IV ACGT 4 cut(s) 294, 669, 1143, 1221
HpyCH4V TGCA 5 cut(s) 256, 513, 673, 683, 1480
HpyF10VI GCNNNNNNNGC 3 cut(s) 482, 504, 1477
HpyF3I CTNAG 5 cut(s) 350, 581, 721, 838, 1247
HpySE526I ACGT 4 cut(s) 294, 669, 1143, 1221
Hsp92I GRCGYC 1 cut(s) 1143
Hsp92II CATG 3 cut(s) 557, 1150, 1523
HspAI GCGC 4 cut(s) 264, 485, 537, 1244
Kzo9I GATC 4 cut(s) 278, 938, 972, 1330
LmnI GCTCC 3 cut(s) 482, 855, 1076
Lsp1109I GCAGC 3 cut(s) 333, 507, 1362
LweI GCATC 3 cut(s) 399, 930, 1288
MaeI CTAG 1 cut(s) 750
MaeII ACGT 4 cut(s) 294, 669, 1143, 1221
MaeIII GTNAC 3 cut(s) 871, 1289, 1460
MalI GATC 4 cut(s) 280, 940, 974, 1332
MboI GATC 4 cut(s) 278, 938, 972, 1330
MboII GAAGA 6 cut(s) 390, 551, 798, 1220, 1274, 1375
MflI RGATCY 1 cut(s) 938
MhlI GDGCHC 1 cut(s) 246
MluCI AATT 6 cut(s) 499, 546, 664, 823, 889, 1567
MlyI GAGTC 2 cut(s) 793, 1503
MmeI TCCRAC 3 cut(s) 28, 395, 950
MroXI GAANNNNTTC 1 cut(s) 1097
MseI TTAA 2 cut(s) 1088, 1570
MslI CAYNNNNRTG 2 cut(s) 59, 1405
MspA1I CMGCKG 1 cut(s) 1375
MspI CCGG 7 cut(s) 23, 222, 708, 869, 1118, 1157, 1179
MspR9I CCNGG 5 cut(s) 24, 183, 695, 1180, 1440
Mva1269I GAATGC 5 cut(s) 258, 1099, 1240, 1246, 1451
MvaI CCWGG 3 cut(s) 183, 695, 1440
MvnI CGCG 1 cut(s) 476
MwoI GCNNNNNNNGC 3 cut(s) 482, 504, 1477
NciI CCSGG 2 cut(s) 24, 1180
NdeI CATATG 1 cut(s) 1482
NdeII GATC 4 cut(s) 278, 938, 972, 1330
NlaIII CATG 3 cut(s) 557, 1150, 1523
NlaIV GGNNCC 3 cut(s) 27, 455, 1072
NmeAIII GCCGAG 2 cut(s) 1047, 1364
NmuCI GTSAC 3 cut(s) 871, 1289, 1460
NspI RCATGY 2 cut(s) 557, 1523
OliI CACNNNNGTG 1 cut(s) 59
PagI TCATGA 1 cut(s) 1146
PceI AGGCCT 1 cut(s) 810
PciI ACATGT 2 cut(s) 553, 1519
PctI GAATGC 5 cut(s) 258, 1099, 1240, 1246, 1451
PdmI GAANNNNTTC 1 cut(s) 1097
PfeI GAWTC 5 cut(s) 6, 103, 585, 631, 1225
PkrI GCNGC 6 cut(s) 348, 497, 1155, 1374, 1377, 1473
PleI GAGTC 2 cut(s) 793, 1502
PpsI GAGTC 2 cut(s) 793, 1502
Ppu21I YACGTR 1 cut(s) 670
PscI ACATGT 2 cut(s) 553, 1519
Psp6I CCWGG 3 cut(s) 181, 693, 1438
PspGI CCWGG 3 cut(s) 181, 693, 1438
PspN4I GGNNCC 3 cut(s) 27, 455, 1072
PspPI GGNCC 3 cut(s) 26, 454, 1023
PsrI GAACNNNNNNTAC 2 cut(s) 1175, 1207
PstNI CAGNNNCTG 1 cut(s) 357
PsuI RGATCY 1 cut(s) 938
RsaI GTAC 3 cut(s) 275, 1082, 1193
RsaNI GTAC 3 cut(s) 274, 1081, 1192
RseI CAYNNNNRTG 2 cut(s) 59, 1405
SaqAI TTAA 2 cut(s) 1088, 1570
SatI GCNGC 6 cut(s) 347, 496, 1154, 1373, 1376, 1472
Sau3AI GATC 4 cut(s) 278, 938, 972, 1330
Sau96I GGNCC 3 cut(s) 26, 454, 1023
SchI GAGTC 2 cut(s) 793, 1503
ScrFI CCNGG 5 cut(s) 24, 183, 695, 1180, 1440
SduI GDGCHC 1 cut(s) 246
SfaNI GCATC 3 cut(s) 399, 930, 1288
SfcI CTRYAG 1 cut(s) 490
SgrAI CRCCGGYG 1 cut(s) 1156
SmiMI CAYNNNNRTG 2 cut(s) 59, 1405
Sse9I AATT 6 cut(s) 499, 546, 664, 823, 889, 1567
SseBI AGGCCT 1 cut(s) 810
SspMI CTAG 1 cut(s) 750
StuI AGGCCT 1 cut(s) 810
StyD4I CCNGG 5 cut(s) 22, 181, 693, 1178, 1438
StyI CCWWGG 3 cut(s) 137, 749, 1507
TaiI ACGT 4 cut(s) 297, 672, 1146, 1224
TaqI TCGA 1 cut(s) 213
TasI AATT 6 cut(s) 499, 546, 664, 823, 889, 1567
TatI WGTACW 1 cut(s) 1191
TauI GCSGC 3 cut(s) 1156, 1375, 1474
TfiI GAWTC 5 cut(s) 6, 103, 585, 631, 1225
Tru1I TTAA 2 cut(s) 1088, 1570
Tru9I TTAA 2 cut(s) 1088, 1570
TscAI CASTG 8 cut(s) 113, 173, 288, 729, 1111, 1209, 1463, 1567
TseFI GTSAC 3 cut(s) 871, 1289, 1460
TseI GCWGC 3 cut(s) 346, 495, 1375
Tsp45I GTSAC 3 cut(s) 871, 1289, 1460
TspDTI ATGAA 2 cut(s) 458, 1163
TspGWI ACGGA 2 cut(s) 104, 291
TspRI CASTG 8 cut(s) 113, 173, 288, 729, 1111, 1209, 1463, 1567
XapI RAATTY 1 cut(s) 546
XceI RCATGY 2 cut(s) 557, 1523
XcmI CCANNNNNNNNNTGG 2 cut(s) 245, 386
XmaJI CCTAGG 1 cut(s) 749
XmnI GAANNNNTTC 1 cut(s) 1097
XspI CTAG 1 cut(s) 750
ZraI GACGTC 1 cut(s) 1144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.