Rh5BG339400

Belongs to the multicopper oxidase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
47939773 .. 47945045
5273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG339400.1

Sequence Viewer

Length: 1392 bp
ATGCAGGCTGGAACATACTTTTACCATGGGCACTATGGAATGCAAAGAAGCGCAGGGTTGTACGGATCTTTGATAGTGGACGTCGCAAAGGGAGAGAAAGAGCCTTTTCACTACGACGGCGAGTTGAACTTGCTGCTGAGCGACTGGTGGCACGAAAGCGTTCACCACCAAGAAGTTGGCCTCTCTTCCAATCCAATGCGTTGGATCGGTGAACCCCAGAGTTTGCTAATGAATGGGAGGGGCCAGTACAACTGTTCTATAGCGGGAGCGCACTATGGCAATTCCAGCTCCACCAAGTGCAGTTTAAGAGGAGGGGAACAATGTGCCCCCAAAATTTTACATGTTCTTCCCAATAAGATCTACAGGCTCCGAATCGCCAGCACTACTGCTCTTGCTTCCCTGAATTTGGCCATTGGGAATCACAAATTGGTGGTGGTGGAAGCGGATGGAAATTACGTCCAACCATTTGCAGTTGATGACCTGGACATCTACTCCGGCGAGAGCTACTCAGTGCTGATAACCACAAACCAAGACCCTTCCAACAACTACTGGGTTTCAGTCGGAGTAAGAGGAAGAGAACCCAAGACTCCTCAAGGCCTCACCCTCCTCAATTACAACACCAACTCCCCCTCCAAGCTCCCCACTTCTCCGCCTCCAGTCACTCCTATCTGGAATGACTACGCCCACAGCAAGTCCTTCACCACCAAGATTCTTGCCCTAATGGGATCCCCACAGCCCCCGAAGACCTTCCACCGTCGGATCACCCTACTCAACACCCAAAACAAAATGAACGGTGGATACACCAAGTGGGCCATCAACAACGTCTCCCTAACCCTACCCCCGACTCCTTACTTGGGCTCCATCAAGTACGGCTTAAAGAACGCTTTCAGCCTCGTGAACCCGCCGGAGAACTTCCCCAACGAGTACAATGTCATGAAGCCGCCGGTCAACCCGAACACGACCGCCGGGAATGGGGTTTACACGCTGGCAATCAACAGCACGGTGGACGTGGTTCTTCAGAATGCGAATGCGCTGAGCGAGAATGTAAGCGAGATACACCCGTGGCATCTTCACGGTCATGACTTCTGGGTGTTGGGTTATGGAGATGGCAAGTTTGATCCGACGAGAGACGAGAGAAAGTTCAACCTGAAGAACCCTCCGCTGCGGAACACTGCGGTGATATTTCCTTACGGGTGGACCGCTCTGCGGTTCGTGGCGGACAACCCAGGAGTGTGGGCTTTTCACTGTCACATTGAGCCGCATTTGCATATGGGCATGGGAGTCGTCTTTGCCGAAGGCGTTCGACATGTCAACAACATACCCAATCAAGCTCTTGCTTGCGGTCTTACCGGAAAGATGTTTACGACCAGAGCTGCCAACCATACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

463

Amino Acids

51.27

Weight (kDa)

8.61

Isoelectric Point (pI)

35.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase PF00394 43 - 207 4.9e-43 Multicopper oxidase
Cu-oxidase_2 PF07731 313 - 433 3.3e-37 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011474)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 84
AccBSI CCGCTC 1 cut(s) 1202
AclWI GGATC 6 cut(s) 73, 212, 720, 733, 767, 1112
AcoI YGGCCR 1 cut(s) 408
AcsI RAATTY 2 cut(s) 333, 403
AcuI CTGAAG 2 cut(s) 1001, 1169
AcyI GRCGYC 1 cut(s) 81
AdeI CACNNNGTG 2 cut(s) 297, 807
AfaI GTAC 4 cut(s) 62, 248, 869, 926
AfiI CCNNNNNNNGG 4 cut(s) 406, 854, 972, 1206
AflIII ACRYGT 2 cut(s) 340, 1306
AgsI TTSAA 2 cut(s) 127, 1144
AjiI CACGTC 1 cut(s) 1009
AjnI CCWGG 2 cut(s) 480, 1225
AjuI GAANNNNNNNTTGG 2 cut(s) 410, 442
AleI CACNNNNGTG 1 cut(s) 1175
AluBI AGCT 5 cut(s) 288, 504, 637, 1331, 1373
AluI AGCT 5 cut(s) 288, 504, 637, 1331, 1373
Alw26I GTCTC 2 cut(s) 829, 1122
AlwI GGATC 6 cut(s) 73, 212, 720, 733, 767, 1112
AoxI GGCC 5 cut(s) 178, 241, 408, 595, 810
ApeKI GCWGC 3 cut(s) 133, 1162, 1373
ApoI RAATTY 2 cut(s) 333, 403
Asp700I GAANNNNTTC 4 cut(s) 159, 746, 884, 1299
AspLEI GCGC 3 cut(s) 53, 271, 1033
AspS9I GGNCC 3 cut(s) 241, 810, 1197
AsuC2I CCSGG 1 cut(s) 967
AsuHPI GGTGA 6 cut(s) 155, 221, 592, 691, 754, 1189
AvaII GGWCC 1 cut(s) 1197
BaeGI GKGCMC 2 cut(s) 33, 328
BaeI ACNNNNGTAYC 2 cut(s) 1046, 1079
BalI TGGCCA 1 cut(s) 410
BamHI GGATCC 1 cut(s) 725
BanII GRGCYC 1 cut(s) 860
BauI CACGAG 1 cut(s) 893
BbsI GAAGAC 1 cut(s) 749
BbvI GCAGC 3 cut(s) 120, 1149, 1360
BccI CCATC 4 cut(s) 440, 821, 869, 1100
BceAI ACGGC 2 cut(s) 133, 886
BcgI CGANNNNNNTGC 2 cut(s) 1264, 1298
BciT130I CCWGG 2 cut(s) 482, 1227
BciVI GTATCC 1 cut(s) 791
BcnI CCSGG 1 cut(s) 967
BcoDI GTCTC 2 cut(s) 829, 1122
BfmI CTRYAG 2 cut(s) 258, 361
BfuI GTATCC 1 cut(s) 791
BglII AGATCT 1 cut(s) 357
BisI GCNGC 5 cut(s) 134, 941, 1163, 1259, 1374
BlpI GCTNAGC 2 cut(s) 137, 1034
BlsI GCNGC 5 cut(s) 135, 942, 1164, 1260, 1375
Bme1390I CCNGG 3 cut(s) 482, 967, 1227
Bme18I GGWCC 1 cut(s) 1197
BmgBI CACGTC 1 cut(s) 1009
BmgT120I GGNCC 3 cut(s) 241, 810, 1197
BmiI GGNNCC 4 cut(s) 242, 368, 727, 859
BmrFI CCNGG 3 cut(s) 482, 967, 1227
BmrI ACTGGG 1 cut(s) 559
BmsI GCATC 1 cut(s) 1075
BmuI ACTGGG 1 cut(s) 559
BpiI GAAGAC 1 cut(s) 749
BplI GAGNNNNNCTC 2 cut(s) 491, 523
BpmI CTGGAG 1 cut(s) 639
Bpu1102I GCTNAGC 2 cut(s) 137, 1034
BpuEI CTTGAG 1 cut(s) 576
BpuMI CCSGG 1 cut(s) 967
BsaHI GRCGYC 1 cut(s) 81
BsaJI CCNNGG 3 cut(s) 25, 1061, 1225
BsaWI WCCGGW 1 cut(s) 1349
Bsc4I CCNNNNNNNGG 4 cut(s) 406, 854, 972, 1206
Bse118I RCCGGY 1 cut(s) 943
Bse1I ACTGG 4 cut(s) 149, 244, 554, 656
BseBI CCWGG 2 cut(s) 482, 1227
BseDI CCNNGG 3 cut(s) 25, 1061, 1225
BseGI GGATG 1 cut(s) 451
BseLI CCNNNNNNNGG 4 cut(s) 406, 854, 972, 1206
BseMII CTCAG 3 cut(s) 128, 522, 1025
BseNI ACTGG 4 cut(s) 149, 244, 554, 656
BseRI GAGGAG 3 cut(s) 324, 579, 596
BseSI GKGCMC 2 cut(s) 33, 328
BseXI GCAGC 3 cut(s) 120, 1149, 1360
BsgI GTGCAG 1 cut(s) 319
Bsh1285I CGRYCG 1 cut(s) 963
BshFI GGCC 5 cut(s) 180, 243, 410, 597, 812
BsiEI CGRYCG 1 cut(s) 963
BsiSI CCGG 5 cut(s) 495, 905, 944, 966, 1350
BslI CCNNNNNNNGG 4 cut(s) 406, 854, 972, 1206
BsmAI GTCTC 2 cut(s) 829, 1122
BsmBI CGTCTC 2 cut(s) 829, 1122
BsmI GAATGC 3 cut(s) 45, 1027, 1033
BsnI GGCC 5 cut(s) 180, 243, 410, 597, 812
Bsp1286I GDGCHC 3 cut(s) 33, 328, 860
Bsp143I GATC 6 cut(s) 65, 204, 357, 725, 759, 1117
Bsp1720I GCTNAGC 2 cut(s) 137, 1034
Bsp19I CCATGG 1 cut(s) 25
BspANI GGCC 5 cut(s) 180, 243, 410, 597, 812
BspCNI CTCAG 3 cut(s) 129, 521, 1026
BspHI TCATGA 2 cut(s) 933, 1078
BspLI GGNNCC 4 cut(s) 242, 368, 727, 859
BspPI GGATC 6 cut(s) 73, 212, 720, 733, 767, 1112
BsrBI CCGCTC 1 cut(s) 1202
BsrFI RCCGGY 1 cut(s) 943
BsrI ACTGG 4 cut(s) 149, 244, 554, 656
BssAI RCCGGY 1 cut(s) 943
BssECI CCNNGG 3 cut(s) 25, 1061, 1225
BssMI GATC 6 cut(s) 65, 204, 357, 725, 759, 1117
BssNI GRCGYC 1 cut(s) 81
BssSI CACGAG 1 cut(s) 893
BssT1I CCWWGG 1 cut(s) 25
Bst2BI CACGAG 1 cut(s) 893
Bst2UI CCWGG 2 cut(s) 482, 1227
Bst4CI ACNGT 6 cut(s) 254, 755, 794, 1003, 1076, 1247
Bst6I CTCTTC 2 cut(s) 190, 568
BstACI GRCGYC 1 cut(s) 81
BstC8I GCNNGC 4 cut(s) 6, 379, 987, 1339
BstDEI CTNAG 3 cut(s) 137, 508, 1034
BstDSI CCRYGG 2 cut(s) 25, 1061
BstF5I GGATG 1 cut(s) 451
BstHHI GCGC 3 cut(s) 53, 271, 1033
BstKTI GATC 6 cut(s) 68, 207, 360, 728, 762, 1120
BstMAI GTCTC 2 cut(s) 829, 1122
BstMBI GATC 6 cut(s) 65, 204, 357, 725, 759, 1117
BstMCI CGRYCG 1 cut(s) 963
BstMWI GCNNNNNNNGC 2 cut(s) 285, 1264
BstNI CCWGG 2 cut(s) 482, 1227
BstNSI RCATGY 2 cut(s) 344, 1310
BstSCI CCNGG 3 cut(s) 480, 965, 1225
BstSFI CTRYAG 2 cut(s) 258, 361
BstSLI GKGCMC 2 cut(s) 33, 328
BstV1I GCAGC 3 cut(s) 120, 1149, 1360
BstV2I GAAGAC 1 cut(s) 749
BstX2I RGATCY 3 cut(s) 65, 357, 725
BstXI CCANNNNNNTGG 3 cut(s) 176, 201, 1233
BstYI RGATCY 3 cut(s) 65, 357, 725
BsuI GTATCC 1 cut(s) 791
BsuRI GGCC 5 cut(s) 180, 243, 410, 597, 812
BtgI CCRYGG 2 cut(s) 25, 1061
BtrI CACGTC 1 cut(s) 1009
BtsCI GGATG 1 cut(s) 451
BtsI GCAGTG 1 cut(s) 1170
BtsIMutI CAGTG 3 cut(s) 516, 1170, 1243
Cac8I GCNNGC 4 cut(s) 6, 379, 987, 1339
CciI TCATGA 2 cut(s) 933, 1078
CfoI GCGC 3 cut(s) 53, 271, 1033
Cfr10I RCCGGY 1 cut(s) 943
Cfr13I GGNCC 3 cut(s) 241, 810, 1197
Csp6I GTAC 4 cut(s) 61, 247, 868, 925
CviAII CATG 6 cut(s) 26, 341, 934, 1079, 1276, 1307
CviQI GTAC 4 cut(s) 61, 247, 868, 925
DdeI CTNAG 3 cut(s) 137, 508, 1034
DpnI GATC 6 cut(s) 67, 206, 359, 727, 761, 1119
DpnII GATC 6 cut(s) 65, 204, 357, 725, 759, 1117
DraIII CACNNNGTG 2 cut(s) 297, 807
EaeI YGGCCR 1 cut(s) 408
Eam1104I CTCTTC 2 cut(s) 190, 568
EarI CTCTTC 2 cut(s) 190, 568
EciI GGCGGA 2 cut(s) 639, 1232
Eco130I CCWWGG 1 cut(s) 25
Eco147I AGGCCT 1 cut(s) 597
Eco24I GRGCYC 1 cut(s) 860
Eco47I GGWCC 1 cut(s) 1197
Eco57I CTGAAG 2 cut(s) 1001, 1169
EcoRII CCWGG 2 cut(s) 480, 1225
EcoT14I CCWWGG 1 cut(s) 25
EcoT38I GRGCYC 1 cut(s) 860
ErhI CCWWGG 1 cut(s) 25
Esp3I CGTCTC 2 cut(s) 829, 1122
FaeI CATG 6 cut(s) 29, 344, 937, 1082, 1279, 1310
FalI AAGNNNNNCTT 2 cut(s) 857, 889
FatI CATG 6 cut(s) 25, 340, 933, 1078, 1275, 1306
FauI CCCGC 2 cut(s) 256, 909
FauNDI CATATG 1 cut(s) 1269
Fnu4HI GCNGC 5 cut(s) 134, 941, 1163, 1259, 1374
FokI GGATG 1 cut(s) 458
FriOI GRGCYC 1 cut(s) 860
Fsp4HI GCNGC 5 cut(s) 134, 941, 1163, 1259, 1374
GlaI GCGC 3 cut(s) 52, 270, 1032
GluI GCNGC 5 cut(s) 134, 941, 1163, 1259, 1374
GsuI CTGGAG 1 cut(s) 639
HaeIII GGCC 5 cut(s) 180, 243, 410, 597, 812
HapII CCGG 5 cut(s) 495, 905, 944, 966, 1350
HhaI GCGC 3 cut(s) 53, 271, 1033
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 6 cut(s) 29, 344, 937, 1082, 1279, 1310
Hin6I GCGC 3 cut(s) 51, 269, 1031
HinP1I GCGC 3 cut(s) 51, 269, 1031
HincII GTYRAC 2 cut(s) 949, 1312
HindII GTYRAC 2 cut(s) 949, 1312
HinfI GANTC 6 cut(s) 372, 418, 586, 709, 844, 1281
HpaII CCGG 5 cut(s) 495, 905, 944, 966, 1350
HphI GGTGA 6 cut(s) 155, 221, 592, 691, 754, 1189
Hpy188I TCNGA 5 cut(s) 371, 563, 759, 1020, 1122
Hpy188III TCNNGA 4 cut(s) 670, 895, 934, 1079
Hpy99I CGWCG 4 cut(s) 86, 119, 759, 1126
HpyAV CCTTC 4 cut(s) 546, 706, 757, 1289
HpyCH4III ACNGT 6 cut(s) 254, 755, 794, 1003, 1076, 1247
HpyCH4IV ACGT 4 cut(s) 81, 456, 822, 1008
HpyCH4V TGCA 5 cut(s) 4, 43, 300, 470, 1267
HpyF10VI GCNNNNNNNGC 2 cut(s) 285, 1264
HpyF3I CTNAG 3 cut(s) 137, 508, 1034
HpySE526I ACGT 4 cut(s) 81, 456, 822, 1008
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 6 cut(s) 29, 344, 937, 1082, 1279, 1310
HspAI GCGC 3 cut(s) 51, 269, 1031
Kzo9I GATC 6 cut(s) 65, 204, 357, 725, 759, 1117
LmnI GCTCC 5 cut(s) 266, 293, 372, 642, 863
Lsp1109I GCAGC 3 cut(s) 120, 1149, 1360
LweI GCATC 1 cut(s) 1075
MaeII ACGT 4 cut(s) 81, 456, 822, 1008
MaeIII GTNAC 2 cut(s) 658, 1247
MalI GATC 6 cut(s) 67, 206, 359, 727, 761, 1119
MbiI CCGCTC 1 cut(s) 1202
MboI GATC 6 cut(s) 65, 204, 357, 725, 759, 1117
MboII GAAGA 7 cut(s) 177, 338, 585, 754, 1007, 1061, 1162
MflI RGATCY 3 cut(s) 65, 357, 725
MhlI GDGCHC 3 cut(s) 33, 328, 860
MlsI TGGCCA 1 cut(s) 410
MluCI AATT 7 cut(s) 280, 333, 403, 425, 451, 610, 1387
MluNI TGGCCA 1 cut(s) 410
MlyI GAGTC 3 cut(s) 580, 838, 1290
MmeI TCCRAC 6 cut(s) 182, 484, 541, 564, 737, 1145
Mox20I TGGCCA 1 cut(s) 410
MroXI GAANNNNTTC 4 cut(s) 159, 746, 884, 1299
MscI TGGCCA 1 cut(s) 410
MseI TTAA 3 cut(s) 305, 875, 1390
MslI CAYNNNNRTG 2 cut(s) 1077, 1175
Msp20I TGGCCA 1 cut(s) 410
MspA1I CMGCKG 1 cut(s) 1162
MspI CCGG 5 cut(s) 495, 905, 944, 966, 1350
MspR9I CCNGG 3 cut(s) 482, 967, 1227
Mva1269I GAATGC 3 cut(s) 45, 1027, 1033
MvaI CCWGG 2 cut(s) 482, 1227
MwoI GCNNNNNNNGC 2 cut(s) 285, 1264
NciI CCSGG 1 cut(s) 967
NcoI CCATGG 1 cut(s) 25
NdeI CATATG 1 cut(s) 1269
NdeII GATC 6 cut(s) 65, 204, 357, 725, 759, 1117
NlaIII CATG 6 cut(s) 29, 344, 937, 1082, 1279, 1310
NlaIV GGNNCC 4 cut(s) 242, 368, 727, 859
NmuCI GTSAC 2 cut(s) 658, 1247
NspI RCATGY 2 cut(s) 344, 1310
OliI CACNNNNGTG 1 cut(s) 1175
PagI TCATGA 2 cut(s) 933, 1078
PceI AGGCCT 1 cut(s) 597
PciI ACATGT 2 cut(s) 340, 1306
PcsI WCGNNNNNNNCGW 1 cut(s) 1290
PctI GAATGC 3 cut(s) 45, 1027, 1033
PdmI GAANNNNTTC 4 cut(s) 159, 746, 884, 1299
PfeI GAWTC 3 cut(s) 372, 418, 709
PkrI GCNGC 5 cut(s) 135, 942, 1164, 1260, 1375
PleI GAGTC 3 cut(s) 580, 838, 1289
PpsI GAGTC 3 cut(s) 580, 838, 1289
PscI ACATGT 2 cut(s) 340, 1306
Psp6I CCWGG 2 cut(s) 480, 1225
PspGI CCWGG 2 cut(s) 480, 1225
PspN4I GGNNCC 4 cut(s) 242, 368, 727, 859
PspPI GGNCC 3 cut(s) 241, 810, 1197
PsrI GAACNNNNNNTAC 2 cut(s) 782, 814
PsuI RGATCY 3 cut(s) 65, 357, 725
RsaI GTAC 4 cut(s) 62, 248, 869, 926
RsaNI GTAC 4 cut(s) 61, 247, 868, 925
RseI CAYNNNNRTG 2 cut(s) 1077, 1175
SaqAI TTAA 3 cut(s) 305, 875, 1390
SatI GCNGC 5 cut(s) 134, 941, 1163, 1259, 1374
Sau3AI GATC 6 cut(s) 65, 204, 357, 725, 759, 1117
Sau96I GGNCC 3 cut(s) 241, 810, 1197
SchI GAGTC 3 cut(s) 580, 838, 1290
ScrFI CCNGG 3 cut(s) 482, 967, 1227
SduI GDGCHC 3 cut(s) 33, 328, 860
SfaNI GCATC 1 cut(s) 1075
SfcI CTRYAG 2 cut(s) 258, 361
SinI GGWCC 1 cut(s) 1197
SmiMI CAYNNNNRTG 2 cut(s) 1077, 1175
SmlI CTYRAG 1 cut(s) 591
SmoI CTYRAG 1 cut(s) 591
Sse9I AATT 7 cut(s) 280, 333, 403, 425, 451, 610, 1387
SseBI AGGCCT 1 cut(s) 597
StuI AGGCCT 1 cut(s) 597
StyD4I CCNGG 3 cut(s) 480, 965, 1225
StyI CCWWGG 1 cut(s) 25
TaaI ACNGT 6 cut(s) 254, 755, 794, 1003, 1076, 1247
TaiI ACGT 4 cut(s) 84, 459, 825, 1011
TaqI TCGA 1 cut(s) 1303
TasI AATT 7 cut(s) 280, 333, 403, 425, 451, 610, 1387
TatI WGTACW 2 cut(s) 246, 924
TauI GCSGC 2 cut(s) 943, 1261
TfiI GAWTC 3 cut(s) 372, 418, 709
Tru1I TTAA 3 cut(s) 305, 875, 1390
Tru9I TTAA 3 cut(s) 305, 875, 1390
TscAI CASTG 3 cut(s) 516, 1177, 1250
TseFI GTSAC 2 cut(s) 658, 1247
TseI GCWGC 3 cut(s) 133, 1162, 1373
Tsp45I GTSAC 2 cut(s) 658, 1247
TspDTI ATGAA 3 cut(s) 245, 803, 950
TspGWI ACGGA 1 cut(s) 78
TspRI CASTG 3 cut(s) 516, 1177, 1250
VpaK11BI GGWCC 1 cut(s) 1197
XapI RAATTY 2 cut(s) 333, 403
XceI RCATGY 2 cut(s) 344, 1310
XcmI CCANNNNNNNNNTGG 2 cut(s) 32, 173
XmnI GAANNNNTTC 4 cut(s) 159, 746, 884, 1299
ZraI GACGTC 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.