FvH4_5g37821

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0024163
Physical Location & Seq
Forward (+)
27862585 .. 27862884
300 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g37821.t1

Sequence Viewer

Length: 300 bp
ATGTTGGGGACGAGATTGCAAGTGACACGTGCTCACAGCAAAGATCAATTTTACAATCCCGCCAGAGCGCACAGGGTTCACCAGAACCAGAAGGCCGCCGAGCAACTCCGACGAGCTCAAAGCGACGTCACGCCCAGTCAATCGCTTGCGGTTAAAGGCAGTAGCAACCTAAACCGGGAGCCAGAGAATCGGGTCGGGTCGGTTGAGCATCATCCCAAACCGGTGGCTATTCCAACTAGCGAGTCGATTAGGCTTCAAGCGTCGACCGTCTTCGAGTGCAGCGGTGCTGGTCATCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

100

Amino Acids

10.95

Weight (kDa)

10.47

Isoelectric Point (pI)

48.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024163)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g37821
pyrus_communis pycom16g03290 pycom17g21180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 129
AccI GTMKAC 1 cut(s) 263
AciI CCGC 4 cut(s) 60, 96, 149, 282
AcvI CACGTG 1 cut(s) 29
AcyI GRCGYC 1 cut(s) 126
AfiI CCNNNNNNNGG 1 cut(s) 175
AflIII ACRYGT 1 cut(s) 26
AgeI ACCGGT 1 cut(s) 220
AgsI TTSAA 1 cut(s) 257
AluBI AGCT 1 cut(s) 116
AluI AGCT 1 cut(s) 116
Alw21I GWGCWC 2 cut(s) 34, 118
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 279
AsiGI ACCGGT 1 cut(s) 220
AspLEI GCGC 1 cut(s) 70
AsuC2I CCSGG 1 cut(s) 176
AsuHPI GGTGA 1 cut(s) 71
BanII GRGCYC 1 cut(s) 118
BbrPI CACGTG 1 cut(s) 29
BbsI GAAGAC 1 cut(s) 262
Bbv12I GWGCWC 2 cut(s) 34, 118
BbvI GCAGC 1 cut(s) 291
BcnI CCSGG 1 cut(s) 176
BfaI CTAG 1 cut(s) 237
BisI GCNGC 2 cut(s) 96, 280
BlsI GCNGC 2 cut(s) 97, 281
Bme1390I CCNGG 1 cut(s) 176
BmiI GGNNCC 1 cut(s) 180
BmrFI CCNGG 1 cut(s) 176
BmrI ACTGGG 1 cut(s) 129
BmsI GCATC 1 cut(s) 217
BmuI ACTGGG 1 cut(s) 129
BpiI GAAGAC 1 cut(s) 262
BpuMI CCSGG 1 cut(s) 176
BsaAI YACGTR 1 cut(s) 29
BsaHI GRCGYC 1 cut(s) 126
BsaWI WCCGGW 1 cut(s) 220
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse118I RCCGGY 1 cut(s) 220
Bse1I ACTGG 1 cut(s) 135
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 1 cut(s) 175
BseNI ACTGG 1 cut(s) 135
BseXI GCAGC 1 cut(s) 291
BsgI GTGCAG 1 cut(s) 298
Bsh1285I CGRYCG 1 cut(s) 267
BshFI GGCC 1 cut(s) 95
BshTI ACCGGT 1 cut(s) 220
BsiEI CGRYCG 1 cut(s) 267
BsiHKAI GWGCWC 2 cut(s) 34, 118
BsiSI CCGG 2 cut(s) 175, 221
BslFI GGGAC 1 cut(s) 22
BslI CCNNNNNNNGG 1 cut(s) 175
BsmFI GGGAC 1 cut(s) 22
BsnI GGCC 1 cut(s) 95
Bsp1286I GDGCHC 2 cut(s) 34, 118
Bsp143I GATC 1 cut(s) 43
BspACI CCGC 4 cut(s) 60, 96, 149, 282
BspANI GGCC 1 cut(s) 95
BspLI GGNNCC 1 cut(s) 180
BsrFI RCCGGY 1 cut(s) 220
BsrI ACTGG 1 cut(s) 135
BssAI RCCGGY 1 cut(s) 220
BssMI GATC 1 cut(s) 43
BssNI GRCGYC 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 268
BstACI GRCGYC 1 cut(s) 126
BstBAI YACGTR 1 cut(s) 29
BstC8I GCNNGC 1 cut(s) 147
BstF5I GGATG 1 cut(s) 211
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 1 cut(s) 46
BstMBI GATC 1 cut(s) 43
BstMCI CGRYCG 1 cut(s) 267
BstSCI CCNGG 1 cut(s) 174
BstV1I GCAGC 1 cut(s) 291
BstV2I GAAGAC 1 cut(s) 262
BstXI CCANNNNNNTGG 1 cut(s) 223
BsuRI GGCC 1 cut(s) 95
BtsCI GGATG 1 cut(s) 211
Cac8I GCNNGC 1 cut(s) 147
CfoI GCGC 1 cut(s) 70
Cfr10I RCCGGY 1 cut(s) 220
CseI GACGC 1 cut(s) 249
CspAI ACCGGT 1 cut(s) 220
CviJI RGCY 5 cut(s) 95, 116, 181, 227, 253
CviKI_1 RGCY 5 cut(s) 95, 116, 181, 227, 253
DpnI GATC 1 cut(s) 45
DpnII GATC 1 cut(s) 43
Ecl136II GAGCTC 1 cut(s) 116
Eco24I GRGCYC 1 cut(s) 118
Eco53kI GAGCTC 1 cut(s) 116
Eco72I CACGTG 1 cut(s) 29
EcoICRI GAGCTC 1 cut(s) 116
EcoT38I GRGCYC 1 cut(s) 118
FaqI GGGAC 1 cut(s) 22
FauI CCCGC 1 cut(s) 67
FblI GTMKAC 1 cut(s) 263
Fnu4HI GCNGC 2 cut(s) 96, 280
FokI GGATG 1 cut(s) 198
FriOI GRGCYC 1 cut(s) 118
Fsp4HI GCNGC 2 cut(s) 96, 280
FspBI CTAG 1 cut(s) 237
GlaI GCGC 1 cut(s) 69
GluI GCNGC 2 cut(s) 96, 280
HaeIII GGCC 1 cut(s) 95
HapII CCGG 2 cut(s) 175, 221
HgaI GACGC 1 cut(s) 249
HhaI GCGC 1 cut(s) 70
Hin1I GRCGYC 1 cut(s) 126
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HincII GTYRAC 1 cut(s) 264
HindII GTYRAC 1 cut(s) 264
HinfI GANTC 2 cut(s) 187, 242
HpaII CCGG 2 cut(s) 175, 221
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 2 cut(s) 79, 264
Hpy188I TCNGA 1 cut(s) 110
Hpy8I GTNNAC 2 cut(s) 79, 264
Hpy99I CGWCG 3 cut(s) 114, 128, 265
HpyAV CCTTC 1 cut(s) 85
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4IV ACGT 2 cut(s) 28, 126
HpyCH4V TGCA 2 cut(s) 19, 279
HpySE526I ACGT 2 cut(s) 28, 126
Hsp92I GRCGYC 1 cut(s) 126
HspAI GCGC 1 cut(s) 68
Kzo9I GATC 1 cut(s) 43
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 9 cut(s) 58, 76, 95, 101, 148, 188, 195, 234, 273
Lsp1109I GCAGC 1 cut(s) 291
LweI GCATC 1 cut(s) 217
MaeI CTAG 1 cut(s) 237
MaeII ACGT 2 cut(s) 28, 126
MaeIII GTNAC 2 cut(s) 22, 127
MalI GATC 1 cut(s) 45
MboI GATC 1 cut(s) 43
MboII GAAGA 1 cut(s) 262
MhlI GDGCHC 2 cut(s) 34, 118
MluCI AATT 1 cut(s) 47
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 2 cut(s) 133, 257
MseI TTAA 1 cut(s) 153
MspA1I CMGCKG 1 cut(s) 282
MspI CCGG 2 cut(s) 175, 221
MspR9I CCNGG 1 cut(s) 176
NciI CCSGG 1 cut(s) 176
NdeII GATC 1 cut(s) 43
NlaIV GGNNCC 1 cut(s) 180
NmeAIII GCCGAG 1 cut(s) 124
NmuCI GTSAC 2 cut(s) 22, 127
PfeI GAWTC 1 cut(s) 187
PinAI ACCGGT 1 cut(s) 220
PkrI GCNGC 2 cut(s) 97, 281
PleI GAGTC 1 cut(s) 250
PmaCI CACGTG 1 cut(s) 29
PmlI CACGTG 1 cut(s) 29
PpsI GAGTC 1 cut(s) 250
Ppu21I YACGTR 1 cut(s) 29
Psp124BI GAGCTC 1 cut(s) 118
PspCI CACGTG 1 cut(s) 29
PspN4I GGNNCC 1 cut(s) 180
SacI GAGCTC 1 cut(s) 118
SalI GTCGAC 1 cut(s) 262
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 2 cut(s) 96, 280
Sau3AI GATC 1 cut(s) 43
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 176
SduI GDGCHC 2 cut(s) 34, 118
SetI ASST 4 cut(s) 31, 118, 129, 171
SfaNI GCATC 1 cut(s) 217
Sse9I AATT 1 cut(s) 47
SsiI CCGC 4 cut(s) 60, 96, 149, 282
SspMI CTAG 1 cut(s) 237
SstI GAGCTC 1 cut(s) 118
StyD4I CCNGG 1 cut(s) 174
TaaI ACNGT 1 cut(s) 268
TaiI ACGT 2 cut(s) 31, 129
TaqI TCGA 3 cut(s) 245, 263, 273
TasI AATT 1 cut(s) 47
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 1 cut(s) 187
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TseFI GTSAC 2 cut(s) 22, 127
TseI GCWGC 1 cut(s) 279
Tsp45I GTSAC 2 cut(s) 22, 127
XmiI GTMKAC 1 cut(s) 263
XspI CTAG 1 cut(s) 237
ZraI GACGTC 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.