pycom17g21180

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0024163
Physical Location & Seq
Forward (+)
19674602 .. 19676478
1877 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g21180.1

Sequence Viewer

Length: 1311 bp
ATGTGTAGATATCACACCCCTACATTAATGTTTGGCTTGTTACACGATGTGATGATGCTTCATTTCTTCCTTTACTATTTGTATCTTGTCAACGTAGTGTCTTTTGTTAAGATCATATACGAAGTAGTAATTTTGTTGCTGAGATTTTTGTTAGTTCCACCACATGGATATGAGACCACTAAAATGCGGTTATTCTTGAATCTGTCTGCTGCGACGTTTTTTCAGCGGCGGAGCTCGATGAATGCGCAACCGACGTGGAGAGAGTCGATTGTGCCTTCTGCAGCGACGATCGTTGCTCCTGTCGAGATTTTTGCACAGGTGGTTGGGCTTCTATGGAATAACAATATTTTAAAATCAACGATCGATATTCAACAAAACCATTTTAACAAAGCTAACATTTCTGCACACTCATGCGCACATATGCGAAAGACTTTTTTTATCAAAATAATATTTAATAAACAAGTGATTGAATCACATTATTATGCGTGTGGAAATGCCTTTTTTATAACCAGCACTACGCGTCTCTTAAGATGTTTTGAAGTATTGCTAGTCCATTGTGAGCAGTTTACTACCCTGAAATTTTTTGGTTTTCAATATTTAGTAAATGAAGTTTTTTTCTATCCCATAATGGTACCTAAAGTCATAATTTTGGGACATTTTCCTACATCCATTAAGAACTGGGCGCAACGTGTCAATATGTTAAAATTAAAAAATCTGGCGTCGTTTTCTACCTCACTTCACCCACCGCTCCCACCCAACCCTCCCTTCATTCTCTCCGCTGCGCCCATCCAATTCCGACTCATCCCTCGCAATTGTTCTCGATTAACCCTAATTTTGGCAAACTATAGAGGCGTCGATCCCCTAAATAGTAAATACCATTGCAGAAAGGATCGATTTTACAACCTGGCGCAAGACGATGTCACGCCCAGCCCATCCTCTTCCTTGAATGGTAACCCCAACCGCAAGTCGCCTGCTTTTAAGCCCACTATGAAGCCCTTGAGTAATCTTAAGCGGTTCTTGCAGTCGATCTCTCTGTGCATCCTTGCCCAGTACCTCTCCAAAGGTGGAGTTGTGGGGGATGAGTTGGATTGGGTGGGCTCAGAGGAAAGAATGGAGGGAGGTTTGGGTGGGAGCTTTAGTTTTTTTTATATTAGTTTATTAATTTATCAATTTTTTAAATATTTGGGTGGGTCACATCACCAGTTAACGGTTAATTTAATAGCAACCGGATGTATGAAAATGTTCCAAAATTATGACTTTAGGTATCACTTTAGGATGAAAAAAATCCATATACCAAATATTGAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

437

Amino Acids

50.32

Weight (kDa)

9.67

Isoelectric Point (pI)

41.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024163)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g37821
pyrus_communis pycom16g03290 pycom17g21180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 506
Acc16I TGCGCA 2 cut(s) 246, 415
Acc65I GGTACC 1 cut(s) 631
AccB1I GGYRCC 1 cut(s) 631
AccB7I CCANNNNNTGG 1 cut(s) 164
AccBSI CCGCTC 1 cut(s) 748
AccII CGCG 1 cut(s) 520
AciI CCGC 7 cut(s) 187, 226, 229, 746, 777, 961, 1012
AclWI GGATC 2 cut(s) 851, 897
AcsI RAATTY 1 cut(s) 578
AcyI GRCGYC 2 cut(s) 719, 852
AdeI CACNNNGTG 1 cut(s) 49
AfaI GTAC 2 cut(s) 633, 1052
AfiI CCNNNNNNNGG 3 cut(s) 164, 835, 1207
AflII CTTAAG 2 cut(s) 526, 1007
AflIII ACRYGT 2 cut(s) 518, 688
AgsI TTSAA 7 cut(s) 199, 371, 470, 539, 593, 946, 1304
AjiI CACGTC 1 cut(s) 255
AjnI CCWGG 1 cut(s) 903
AjuI GAANNNNNNNTTGG 2 cut(s) 749, 781
AluBI AGCT 3 cut(s) 234, 392, 1134
AluI AGCT 3 cut(s) 234, 392, 1134
Alw21I GWGCWC 1 cut(s) 236
Alw26I GTCTC 2 cut(s) 167, 527
AlwI GGATC 2 cut(s) 851, 897
ApeKI GCWGC 3 cut(s) 209, 281, 779
ApoI RAATTY 1 cut(s) 578
AseI ATTAAT 2 cut(s) 26, 1160
Asp700I GAANNNNTTC 1 cut(s) 1241
Asp718I GGTACC 1 cut(s) 631
AspLEI GCGC 5 cut(s) 247, 416, 685, 784, 910
AsuHPI GGTGA 2 cut(s) 731, 1190
BanI GGYRCC 1 cut(s) 631
BanII GRGCYC 2 cut(s) 236, 1100
Bbv12I GWGCWC 1 cut(s) 236
BbvI GCAGC 3 cut(s) 196, 293, 766
BccI CCATC 2 cut(s) 794, 940
BcgI CGANNNNNNTGC 2 cut(s) 293, 327
BciT130I CCWGG 1 cut(s) 905
BcoDI GTCTC 2 cut(s) 167, 527
BfaI CTAG 1 cut(s) 548
BfmI CTRYAG 2 cut(s) 279, 844
BfrI CTTAAG 2 cut(s) 526, 1007
BisI GCNGC 4 cut(s) 210, 227, 282, 780
BlsI GCNGC 4 cut(s) 211, 228, 283, 781
Bme1390I CCNGG 1 cut(s) 905
BmgBI CACGTC 1 cut(s) 255
BmiI GGNNCC 1 cut(s) 633
BmrFI CCNGG 1 cut(s) 905
BmrI ACTGGG 2 cut(s) 688, 1042
BmsI GCATC 2 cut(s) 45, 1047
BmuI ACTGGG 2 cut(s) 688, 1042
BpuEI CTTGAG 1 cut(s) 1018
Bsa29I ATCGAT 2 cut(s) 363, 892
BsaHI GRCGYC 2 cut(s) 719, 852
BsaI GGTCTC 1 cut(s) 167
BsaWI WCCGGW 1 cut(s) 1226
BsaXI ACNNNNNCTCC 2 cut(s) 1123, 1153
Bsc4I CCNNNNNNNGG 3 cut(s) 164, 835, 1207
Bse1I ACTGG 3 cut(s) 683, 1048, 1201
Bse3DI GCAATG 1 cut(s) 877
BseBI CCWGG 1 cut(s) 905
BseCI ATCGAT 2 cut(s) 363, 892
BseGI GGATG 8 cut(s) 665, 786, 801, 932, 1038, 1084, 1235, 1281
BseLI CCNNNNNNNGG 3 cut(s) 164, 835, 1207
BseMI GCAATG 1 cut(s) 877
BseMII CTCAG 2 cut(s) 131, 1113
BseNI ACTGG 3 cut(s) 683, 1048, 1201
BseXI GCAGC 3 cut(s) 196, 293, 766
BseYI CCCAGC 1 cut(s) 926
BsgI GTGCAG 1 cut(s) 387
Bsh1236I CGCG 1 cut(s) 520
Bsh1285I CGRYCG 2 cut(s) 291, 363
BshNI GGYRCC 1 cut(s) 631
BshVI ATCGAT 2 cut(s) 363, 892
BsiEI CGRYCG 2 cut(s) 291, 363
BsiHKAI GWGCWC 1 cut(s) 236
BsiSI CCGG 1 cut(s) 1227
BslFI GGGAC 1 cut(s) 666
BslI CCNNNNNNNGG 3 cut(s) 164, 835, 1207
BsmAI GTCTC 2 cut(s) 167, 527
BsmBI CGTCTC 1 cut(s) 527
BsmFI GGGAC 1 cut(s) 666
BsmI GAATGC 1 cut(s) 247
Bso31I GGTCTC 1 cut(s) 167
Bsp1286I GDGCHC 2 cut(s) 236, 1100
Bsp143I GATC 6 cut(s) 111, 288, 360, 856, 889, 1026
BspACI CCGC 7 cut(s) 187, 226, 229, 746, 777, 961, 1012
BspCNI CTCAG 2 cut(s) 132, 1112
BspDI ATCGAT 2 cut(s) 363, 892
BspFNI CGCG 1 cut(s) 520
BspLI GGNNCC 1 cut(s) 633
BspMAI CTGCAG 1 cut(s) 283
BspPI GGATC 2 cut(s) 851, 897
BspT107I GGYRCC 1 cut(s) 631
BspTI CTTAAG 2 cut(s) 526, 1007
BspTNI GGTCTC 1 cut(s) 167
BsrBI CCGCTC 1 cut(s) 748
BsrDI GCAATG 1 cut(s) 877
BsrI ACTGG 3 cut(s) 683, 1048, 1201
BssMI GATC 6 cut(s) 111, 288, 360, 856, 889, 1026
BssNI GRCGYC 2 cut(s) 719, 852
Bst2UI CCWGG 1 cut(s) 905
Bst4CI ACNGT 1 cut(s) 1210
Bst6I CTCTTC 1 cut(s) 943
BstACI GRCGYC 2 cut(s) 719, 852
BstAFI CTTAAG 2 cut(s) 526, 1007
BstC8I GCNNGC 1 cut(s) 972
BstDEI CTNAG 2 cut(s) 140, 1099
BstEII GGTNACC 1 cut(s) 950
BstF5I GGATG 8 cut(s) 665, 786, 801, 932, 1038, 1084, 1235, 1281
BstFNI CGCG 1 cut(s) 520
BstHHI GCGC 5 cut(s) 247, 416, 685, 784, 910
BstKTI GATC 6 cut(s) 114, 291, 363, 859, 892, 1029
BstMAI GTCTC 2 cut(s) 167, 527
BstMBI GATC 6 cut(s) 111, 288, 360, 856, 889, 1026
BstMCI CGRYCG 2 cut(s) 291, 363
BstMWI GCNNNNNNNGC 1 cut(s) 1018
BstNI CCWGG 1 cut(s) 905
BstPI GGTNACC 1 cut(s) 950
BstSCI CCNGG 1 cut(s) 903
BstSFI CTRYAG 2 cut(s) 279, 844
BstUI CGCG 1 cut(s) 520
BstV1I GCAGC 3 cut(s) 196, 293, 766
Bsu15I ATCGAT 2 cut(s) 363, 892
BsuTUI ATCGAT 2 cut(s) 363, 892
BtrI CACGTC 1 cut(s) 255
BtsCI GGATG 8 cut(s) 665, 786, 801, 932, 1038, 1084, 1235, 1281
Cac8I GCNNGC 1 cut(s) 972
CfoI GCGC 5 cut(s) 247, 416, 685, 784, 910
ClaI ATCGAT 2 cut(s) 363, 892
CseI GACGC 3 cut(s) 509, 708, 841
Csp6I GTAC 2 cut(s) 632, 1051
CspCI CAANNNNNGTGG 2 cut(s) 236, 271
CviAII CATG 2 cut(s) 164, 411
CviJI RGCY 9 cut(s) 36, 234, 328, 392, 930, 982, 994, 1098, 1134
CviKI_1 RGCY 9 cut(s) 36, 234, 328, 392, 930, 982, 994, 1098, 1134
CviQI GTAC 2 cut(s) 632, 1051
DdeI CTNAG 2 cut(s) 140, 1099
DpnI GATC 6 cut(s) 113, 290, 362, 858, 891, 1028
DpnII GATC 6 cut(s) 111, 288, 360, 856, 889, 1026
DraI TTTAAA 2 cut(s) 351, 1177
DraIII CACNNNGTG 1 cut(s) 49
Eam1104I CTCTTC 1 cut(s) 943
EarI CTCTTC 1 cut(s) 943
EciI GGCGGA 1 cut(s) 244
Ecl136II GAGCTC 1 cut(s) 234
Eco24I GRGCYC 2 cut(s) 236, 1100
Eco31I GGTCTC 1 cut(s) 167
Eco32I GATATC 1 cut(s) 11
Eco53kI GAGCTC 1 cut(s) 234
Eco91I GGTNACC 1 cut(s) 950
EcoICRI GAGCTC 1 cut(s) 234
EcoO65I GGTNACC 1 cut(s) 950
EcoRII CCWGG 1 cut(s) 903
EcoRV GATATC 1 cut(s) 11
EcoT38I GRGCYC 2 cut(s) 236, 1100
Esp3I CGTCTC 1 cut(s) 527
FaeI CATG 2 cut(s) 167, 414
FalI AAGNNNNNCTT 2 cut(s) 1001, 1033
FaqI GGGAC 1 cut(s) 666
FatI CATG 2 cut(s) 163, 410
FauNDI CATATG 1 cut(s) 420
Fnu4HI GCNGC 4 cut(s) 210, 227, 282, 780
FokI GGATG 8 cut(s) 652, 773, 788, 919, 1025, 1091, 1242, 1288
FriOI GRGCYC 2 cut(s) 236, 1100
Fsp4HI GCNGC 4 cut(s) 210, 227, 282, 780
FspAI RTGCGCAY 1 cut(s) 415
FspBI CTAG 1 cut(s) 548
FspI TGCGCA 2 cut(s) 246, 415
GlaI GCGC 5 cut(s) 246, 415, 684, 783, 909
GluI GCNGC 4 cut(s) 210, 227, 282, 780
GsaI CCCAGC 1 cut(s) 930
HapII CCGG 1 cut(s) 1227
HgaI GACGC 3 cut(s) 509, 708, 841
HhaI GCGC 5 cut(s) 247, 416, 685, 784, 910
Hin1I GRCGYC 2 cut(s) 719, 852
Hin1II CATG 2 cut(s) 167, 414
Hin6I GCGC 5 cut(s) 245, 414, 683, 782, 908
HinP1I GCGC 5 cut(s) 245, 414, 683, 782, 908
HincII GTYRAC 2 cut(s) 91, 1206
HindII GTYRAC 2 cut(s) 91, 1206
HinfI GANTC 4 cut(s) 199, 263, 470, 798
HpaI GTTAAC 1 cut(s) 1206
HpaII CCGG 1 cut(s) 1227
HphI GGTGA 2 cut(s) 731, 1190
Hpy166II GTNNAC 3 cut(s) 91, 567, 1206
Hpy188I TCNGA 2 cut(s) 797, 1102
Hpy188III TCNNGA 3 cut(s) 196, 304, 819
Hpy8I GTNNAC 3 cut(s) 91, 567, 1206
Hpy99I CGWCG 5 cut(s) 217, 256, 289, 724, 857
HpyAV CCTTC 2 cut(s) 285, 775
HpyCH4III ACNGT 1 cut(s) 1210
HpyCH4IV ACGT 4 cut(s) 93, 215, 254, 688
HpyCH4V TGCA 6 cut(s) 281, 314, 404, 882, 1021, 1038
HpyF10VI GCNNNNNNNGC 1 cut(s) 1018
HpyF3I CTNAG 2 cut(s) 140, 1099
HpySE526I ACGT 4 cut(s) 93, 215, 254, 688
Hsp92I GRCGYC 2 cut(s) 719, 852
Hsp92II CATG 2 cut(s) 167, 414
HspAI GCGC 5 cut(s) 245, 414, 683, 782, 908
KpnI GGTACC 1 cut(s) 635
KspAI GTTAAC 1 cut(s) 1206
Kzo9I GATC 6 cut(s) 111, 288, 360, 856, 889, 1026
LmnI GCTCC 4 cut(s) 231, 301, 753, 1131
Lsp1109I GCAGC 3 cut(s) 196, 293, 766
LweI GCATC 2 cut(s) 45, 1047
MaeI CTAG 1 cut(s) 548
MaeII ACGT 4 cut(s) 93, 215, 254, 688
MaeIII GTNAC 4 cut(s) 39, 919, 950, 1191
MalI GATC 6 cut(s) 113, 290, 362, 858, 891, 1028
MbiI CCGCTC 1 cut(s) 748
MboI GATC 6 cut(s) 111, 288, 360, 856, 889, 1026
MboII GAAGA 2 cut(s) 58, 930
MfeI CAATTG 1 cut(s) 811
MhlI GDGCHC 2 cut(s) 236, 1100
MluI ACGCGT 1 cut(s) 518
MlyI GAGTC 2 cut(s) 272, 792
MmeI TCCRAC 2 cut(s) 820, 1065
MnlI CCTC 9 cut(s) 742, 771, 816, 842, 946, 1064, 1096, 1108, 1112
MroXI GAANNNNTTC 1 cut(s) 1241
MslI CAYNNNNRTG 4 cut(s) 168, 182, 409, 480
MspA1I CMGCKG 2 cut(s) 226, 779
MspCI CTTAAG 2 cut(s) 526, 1007
MspI CCGG 1 cut(s) 1227
MspR9I CCNGG 1 cut(s) 905
MunI CAATTG 1 cut(s) 811
Mva1269I GAATGC 1 cut(s) 247
MvaI CCWGG 1 cut(s) 905
MvnI CGCG 1 cut(s) 520
MwoI GCNNNNNNNGC 1 cut(s) 1018
NdeI CATATG 1 cut(s) 420
NdeII GATC 6 cut(s) 111, 288, 360, 856, 889, 1026
NlaIII CATG 2 cut(s) 167, 414
NlaIV GGNNCC 1 cut(s) 633
NmuCI GTSAC 2 cut(s) 919, 1191
NsbI TGCGCA 2 cut(s) 246, 415
PctI GAATGC 1 cut(s) 247
PdmI GAANNNNTTC 1 cut(s) 1241
PfeI GAWTC 2 cut(s) 199, 470
PflFI GACNNNGTC 1 cut(s) 917
PflMI CCANNNNNTGG 1 cut(s) 164
PkrI GCNGC 4 cut(s) 211, 228, 283, 781
Ple19I CGATCG 2 cut(s) 291, 363
PleI GAGTC 2 cut(s) 271, 792
PpsI GAGTC 2 cut(s) 271, 792
PshBI ATTAAT 2 cut(s) 26, 1160
PsiI TTATAA 1 cut(s) 506
Psp124BI GAGCTC 1 cut(s) 236
Psp6I CCWGG 1 cut(s) 903
PspEI GGTNACC 1 cut(s) 950
PspFI CCCAGC 1 cut(s) 926
PspGI CCWGG 1 cut(s) 903
PspN4I GGNNCC 1 cut(s) 633
PstI CTGCAG 1 cut(s) 283
PsyI GACNNNGTC 1 cut(s) 917
PvuI CGATCG 2 cut(s) 291, 363
RsaI GTAC 2 cut(s) 633, 1052
RsaNI GTAC 2 cut(s) 632, 1051
RseI CAYNNNNRTG 4 cut(s) 168, 182, 409, 480
SacI GAGCTC 1 cut(s) 236
SatI GCNGC 4 cut(s) 210, 227, 282, 780
Sau3AI GATC 6 cut(s) 111, 288, 360, 856, 889, 1026
SchI GAGTC 2 cut(s) 272, 792
ScrFI CCNGG 1 cut(s) 905
SduI GDGCHC 2 cut(s) 236, 1100
SfaNI GCATC 2 cut(s) 45, 1047
SfcI CTRYAG 2 cut(s) 279, 844
SmiMI CAYNNNNRTG 4 cut(s) 168, 182, 409, 480
SmlI CTYRAG 3 cut(s) 526, 997, 1007
SmoI CTYRAG 3 cut(s) 526, 997, 1007
SsiI CCGC 7 cut(s) 187, 226, 229, 746, 777, 961, 1012
SspI AATATT 5 cut(s) 346, 450, 596, 1181, 1300
SspMI CTAG 1 cut(s) 548
SstI GAGCTC 1 cut(s) 236
StyD4I CCNGG 1 cut(s) 903
TaaI ACNGT 1 cut(s) 1210
TaiI ACGT 4 cut(s) 96, 218, 257, 691
TaqI TCGA 8 cut(s) 236, 266, 303, 363, 820, 855, 892, 1025
TauI GCSGC 1 cut(s) 229
TfiI GAWTC 2 cut(s) 199, 470
TseFI GTSAC 2 cut(s) 919, 1191
TseI GCWGC 3 cut(s) 209, 281, 779
Tsp45I GTSAC 2 cut(s) 919, 1191
TspDTI ATGAA 7 cut(s) 50, 254, 621, 757, 1004, 1250, 1292
Tth111I GACNNNGTC 1 cut(s) 917
Van91I CCANNNNNTGG 1 cut(s) 164
Vha464I CTTAAG 2 cut(s) 526, 1007
VspI ATTAAT 2 cut(s) 26, 1160
XapI RAATTY 1 cut(s) 578
XmnI GAANNNNTTC 1 cut(s) 1241
XspI CTAG 1 cut(s) 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.