FvH4_5g38290

Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
28310844 .. 28318412
7569 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g38290.t3

Sequence Viewer

Length: 1593 bp
ATGGAAGCTTACACAAGCATGTCCATCCATTCTCTGGATCCTGATATGGAAACCCCTGGAGTAGTTGAAAAGGCAGTAGCACTTAAGAACTTTATTAAGGTTAAGAGTGTAGTTGCAGTCACCAGTTTCCTCTGTCGCTTTTCTGGAAACAGAAACAAAGGTGGACCGGATGTTGCTGATGATGCAGATAAGAATTTTTCAGATTCCATTAAGGACAGTGAAGTTGGAGATGCCTCTCAGAAAACATTGGAAAGACCTGCATGGAATCCCCTTAGCTTTATTAAAATGTACCCAGATGTTGATGGAAGGAATAAAGCTGAGGATGCAAATGATGAACCAGAACATCCTATAGCCATGAAAGGGAGAATAATATTGTACACAAGGTTAGGGTGCCAGGACTGCAAAGATGCCAGGTTATTTTTGTATTGGAAGAAGCTCAGATATACGGAGATCAATATTGATGTGTACCCTAGTAGAAAGCAGGAGTTAGAGAAATTTTCTGGGTCTTCTACTGTTCCAAAGGTGTTCTTCAATGAAGTCCTTATTGGAGGTTTGAGTGAACTAAAGGGCCTGGAAGACTCTGGCAAGCTTGATGAGAAGATTGATTATCTGGTTAGTGAAGCACCATCATTTGAAGCTCCTTTGCCACCTCTTTCAGGTGAAGATGATGTTTCCAATAGTGGAGCTATTGATGAACTGGCTCTTATTGTCCGGAAAATGAAAGAATTTGTTGTTGTGAAGGACCGGTTTTACAAAATGCGCAGGTTCACAAAGAGTTTTTCAGGTTCAGAAGCAGTGGATTTCTTGTCAGAGGATCAGTATCTAGAAAGGGAAGAGGCTATCGAATTTGGTAGGAAGCTTGCAAGCAAACTCTTCTTTCAACATGTTCTTGAGGAAAATTTATTTGAGGATGGAAGCCACTTGTATCGGTTCCTGGATGATGATCCAGTTGTATCTCAATGTCAGAACATCCCAAAGGGTATAATTGATGTGAAGCCAAAGCCCATCATACAAATTGAATCAAGGTTGAGATTTGTAATGTGTGCCATCTTGGAAGCCTATGTGTCAGAAGATGGAAAACATATTGATTACAGAAGTATCCATGGAAGTGAGGAATTCGCAAGGTATCTGAGAACAGTAGAGGAGCTCCACAGAGTTGAAATGCAGGATATGCGGAGGGAGGATAAACTTGCTTTCTTTATAAATCTTTACAATATGATGGCCATCCATGCAATACTGGTATGGGGTCATCCAGATGGAGCAATAGAACGAAGGAAGTTGTTTGGAGACTTCAAATATGTTATTGGTGGGTCTGCATATTCACTTTCAGATATCCAAAATGGTATTTTACGGGGAAATCAGCGACCACCGTATAATCTCATGAAGCCGTTTAATCCAAAAGATAAGCGTGCCATGGTAATATCGTACAAATGCTTTTCAGTATTTGGTTTGAATTTATACTTGTTGCACTGGGGCTGTTTTTCTTGGAAGTTGTTACCTGACAAGTTTTGCATTAGTTACTTGTATGTAATCTACATGGAAGAACAATACTTCTGTGTCTTGGCCTATTTTTGGGGGTTTTATTTATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

531

Amino Acids

61.08

Weight (kDa)

5.59

Isoelectric Point (pI)

37.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 207 - 266 3.1e-13 Glutaredoxin
DEP PF00610 329 - 395 9.4e-16 Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
DUF547 PF04784 473 - 559 3.4e-22 Protein of unknown function, DUF547
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1202
Acc16I TGCGCA 1 cut(s) 761
Acc36I ACCTGC 2 cut(s) 265, 753
AccB1I GGYRCC 1 cut(s) 390
AccB7I CCANNNNNTGG 1 cut(s) 34
AccIII TCCGGA 1 cut(s) 711
AciI CCGC 1 cut(s) 1174
AclWI GGATC 4 cut(s) 32, 45, 822, 938
AcoI YGGCCR 1 cut(s) 1221
AcsI RAATTY 7 cut(s) 193, 494, 725, 845, 898, 1115, 1453
AfaI GTAC 4 cut(s) 290, 377, 467, 1427
AfiI CCNNNNNNNGG 4 cut(s) 34, 360, 656, 1572
AflII CTTAAG 1 cut(s) 83
AflIII ACRYGT 1 cut(s) 883
AgeI ACCGGT 1 cut(s) 744
AgsI TTSAA 8 cut(s) 68, 532, 635, 881, 1019, 1160, 1294, 1453
AjnI CCWGG 5 cut(s) 55, 393, 410, 570, 933
AjuI GAANNNNNNNTTGG 2 cut(s) 528, 560
AluBI AGCT 9 cut(s) 8, 276, 317, 436, 589, 638, 686, 859, 1147
AluI AGCT 9 cut(s) 8, 276, 317, 436, 589, 638, 686, 859, 1147
Alw21I GWGCWC 1 cut(s) 1149
Alw26I GTCTC 1 cut(s) 1281
AlwI GGATC 4 cut(s) 32, 45, 822, 938
Aor13HI TCCGGA 1 cut(s) 711
AoxI GGCC 3 cut(s) 568, 1221, 1563
ApoI RAATTY 7 cut(s) 193, 494, 725, 845, 898, 1115, 1453
AsiGI ACCGGT 1 cut(s) 744
AspLEI GCGC 1 cut(s) 762
AspS9I GGNCC 3 cut(s) 164, 568, 742
AsuHPI GGTGA 2 cut(s) 112, 671
AvaII GGWCC 2 cut(s) 164, 742
BaeI ACNNNNGTAYC 2 cut(s) 1081, 1114
BalI TGGCCA 1 cut(s) 1223
BamHI GGATCC 1 cut(s) 37
BanI GGYRCC 1 cut(s) 390
BanII GRGCYC 1 cut(s) 1149
BbsI GAAGAC 2 cut(s) 498, 582
Bbv12I GWGCWC 1 cut(s) 1149
BbvCI CCTCAGC 1 cut(s) 318
BceAI ACGGC 1 cut(s) 1372
BciT130I CCWGG 5 cut(s) 57, 395, 412, 572, 935
BciVI GTATCC 1 cut(s) 1109
BcoDI GTCTC 1 cut(s) 1281
BfaI CTAG 2 cut(s) 471, 824
BfmI CTRYAG 1 cut(s) 348
BfrI CTTAAG 1 cut(s) 83
BfuAI ACCTGC 2 cut(s) 265, 753
BfuI GTATCC 1 cut(s) 1109
Bme1390I CCNGG 5 cut(s) 57, 395, 412, 572, 935
Bme18I GGWCC 2 cut(s) 164, 742
BmgT120I GGNCC 3 cut(s) 164, 568, 742
BmiI GGNNCC 3 cut(s) 39, 392, 932
BmrFI CCNGG 5 cut(s) 57, 395, 412, 572, 935
BmrI ACTGGG 1 cut(s) 1480
BmsI GCATC 4 cut(s) 172, 220, 313, 397
BmuI ACTGGG 1 cut(s) 1480
BpiI GAAGAC 2 cut(s) 498, 582
BpmI CTGGAG 1 cut(s) 78
Bpu10I CCTNAGC 2 cut(s) 272, 318
BpuEI CTTGAG 1 cut(s) 911
BsaBI GATNNNNATC 3 cut(s) 819, 942, 1223
BsaJI CCNNGG 3 cut(s) 55, 1102, 1413
BsaWI WCCGGW 3 cut(s) 166, 711, 744
Bsc4I CCNNNNNNNGG 4 cut(s) 34, 360, 656, 1572
Bse118I RCCGGY 1 cut(s) 744
Bse1I ACTGG 5 cut(s) 123, 702, 947, 1242, 1475
Bse8I GATNNNNATC 3 cut(s) 819, 942, 1223
BseAI TCCGGA 1 cut(s) 711
BseBI CCWGG 5 cut(s) 57, 395, 412, 572, 935
BseDI CCNNGG 3 cut(s) 55, 1102, 1413
BseGI GGATG 9 cut(s) 24, 175, 328, 343, 916, 943, 969, 1224, 1249
BseJI GATNNNNATC 3 cut(s) 819, 942, 1223
BseLI CCNNNNNNNGG 4 cut(s) 34, 360, 656, 1572
BseMII CTCAG 4 cut(s) 251, 309, 451, 1121
BseNI ACTGG 5 cut(s) 123, 702, 947, 1242, 1475
BseRI GAGGAG 1 cut(s) 1157
BshFI GGCC 3 cut(s) 570, 1223, 1565
BshNI GGYRCC 1 cut(s) 390
BshTI ACCGGT 1 cut(s) 744
BsiHKAI GWGCWC 1 cut(s) 1149
BsiSI CCGG 3 cut(s) 167, 712, 745
BslI CCNNNNNNNGG 4 cut(s) 34, 360, 656, 1572
BsmAI GTCTC 1 cut(s) 1281
BsnI GGCC 3 cut(s) 570, 1223, 1565
Bsp1286I GDGCHC 1 cut(s) 1149
Bsp13I TCCGGA 1 cut(s) 711
Bsp1407I TGTACA 1 cut(s) 375
Bsp143I GATC 4 cut(s) 37, 450, 814, 943
Bsp19I CCATGG 2 cut(s) 1102, 1413
BspACI CCGC 1 cut(s) 1174
BspANI GGCC 3 cut(s) 570, 1223, 1565
BspCNI CTCAG 4 cut(s) 250, 310, 450, 1122
BspEI TCCGGA 1 cut(s) 711
BspHI TCATGA 1 cut(s) 1380
BspLI GGNNCC 3 cut(s) 39, 392, 932
BspMI ACCTGC 2 cut(s) 265, 753
BspPI GGATC 4 cut(s) 32, 45, 822, 938
BspT107I GGYRCC 1 cut(s) 390
BspTI CTTAAG 1 cut(s) 83
BsrFI RCCGGY 1 cut(s) 744
BsrGI TGTACA 1 cut(s) 375
BsrI ACTGG 5 cut(s) 123, 702, 947, 1242, 1475
BssAI RCCGGY 1 cut(s) 744
BssECI CCNNGG 3 cut(s) 55, 1102, 1413
BssMI GATC 4 cut(s) 37, 450, 814, 943
BssT1I CCWWGG 2 cut(s) 1102, 1413
Bst2UI CCWGG 5 cut(s) 57, 395, 412, 572, 935
Bst4CI ACNGT 4 cut(s) 218, 514, 1138, 1371
Bst6I CTCTTC 2 cut(s) 828, 878
BstAFI CTTAAG 1 cut(s) 83
BstAPI GCANNNNNTGC 1 cut(s) 1171
BstAUI TGTACA 1 cut(s) 375
BstC8I GCNNGC 4 cut(s) 587, 861, 865, 1410
BstDEI CTNAG 5 cut(s) 237, 272, 318, 437, 1130
BstDSI CCRYGG 2 cut(s) 1102, 1413
BstENI CCTNNNNNAGG 1 cut(s) 654
BstF5I GGATG 9 cut(s) 24, 175, 328, 343, 916, 943, 969, 1224, 1249
BstHHI GCGC 1 cut(s) 762
BstKTI GATC 4 cut(s) 40, 453, 817, 946
BstMAI GTCTC 1 cut(s) 1281
BstMBI GATC 4 cut(s) 37, 450, 814, 943
BstMWI GCNNNNNNNGC 5 cut(s) 182, 323, 399, 1171, 1229
BstNI CCWGG 5 cut(s) 57, 395, 412, 572, 935
BstNSI RCATGY 2 cut(s) 22, 887
BstSCI CCNGG 5 cut(s) 55, 393, 410, 570, 933
BstSFI CTRYAG 1 cut(s) 348
BstV2I GAAGAC 2 cut(s) 498, 582
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BsuI GTATCC 1 cut(s) 1109
BsuRI GGCC 3 cut(s) 570, 1223, 1565
BtgI CCRYGG 2 cut(s) 1102, 1413
BtsCI GGATG 9 cut(s) 24, 175, 328, 343, 916, 943, 969, 1224, 1249
BtsI GCAGTG 1 cut(s) 801
BtsIMutI CAGTG 3 cut(s) 223, 801, 1468
BveI ACCTGC 2 cut(s) 265, 753
Cac8I GCNNGC 4 cut(s) 587, 861, 865, 1410
CciI TCATGA 1 cut(s) 1380
CfoI GCGC 1 cut(s) 762
Cfr10I RCCGGY 1 cut(s) 744
Cfr13I GGNCC 3 cut(s) 164, 568, 742
Csp6I GTAC 4 cut(s) 289, 376, 466, 1426
CspAI ACCGGT 1 cut(s) 744
CviAII CATG 9 cut(s) 19, 261, 355, 884, 1103, 1229, 1381, 1414, 1537
CviQI GTAC 4 cut(s) 289, 376, 466, 1426
DdeI CTNAG 5 cut(s) 237, 272, 318, 437, 1130
DpnI GATC 4 cut(s) 39, 452, 816, 945
DpnII GATC 4 cut(s) 37, 450, 814, 943
EaeI YGGCCR 1 cut(s) 1221
Eam1104I CTCTTC 2 cut(s) 828, 878
EarI CTCTTC 2 cut(s) 828, 878
Ecl136II GAGCTC 1 cut(s) 1147
Eco130I CCWWGG 2 cut(s) 1102, 1413
Eco24I GRGCYC 1 cut(s) 1149
Eco32I GATATC 1 cut(s) 1333
Eco47I GGWCC 2 cut(s) 164, 742
Eco53kI GAGCTC 1 cut(s) 1147
EcoICRI GAGCTC 1 cut(s) 1147
EcoNI CCTNNNNNAGG 1 cut(s) 654
EcoO109I RGGNCCY 1 cut(s) 568
EcoRI GAATTC 1 cut(s) 1115
EcoRII CCWGG 5 cut(s) 55, 393, 410, 570, 933
EcoRV GATATC 1 cut(s) 1333
EcoT14I CCWWGG 2 cut(s) 1102, 1413
EcoT38I GRGCYC 1 cut(s) 1149
ErhI CCWWGG 2 cut(s) 1102, 1413
FaeI CATG 9 cut(s) 22, 264, 358, 887, 1106, 1232, 1384, 1417, 1540
FalI AAGNNNNNCTT 2 cut(s) 512, 544
FatI CATG 9 cut(s) 18, 260, 354, 883, 1102, 1228, 1380, 1413, 1536
FokI GGATG 9 cut(s) 11, 182, 330, 335, 923, 950, 956, 1211, 1236
FriOI GRGCYC 1 cut(s) 1149
FspBI CTAG 2 cut(s) 471, 824
FspI TGCGCA 1 cut(s) 761
GlaI GCGC 1 cut(s) 761
GsuI CTGGAG 1 cut(s) 78
HaeIII GGCC 3 cut(s) 570, 1223, 1565
HapII CCGG 3 cut(s) 167, 712, 745
HhaI GCGC 1 cut(s) 762
Hin1II CATG 9 cut(s) 22, 264, 358, 887, 1106, 1232, 1384, 1417, 1540
Hin6I GCGC 1 cut(s) 760
HinP1I GCGC 1 cut(s) 760
HindIII AAGCTT 3 cut(s) 6, 587, 857
HinfI GANTC 4 cut(s) 203, 265, 578, 1019
HpaII CCGG 3 cut(s) 167, 712, 745
HphI GGTGA 2 cut(s) 112, 671
Hpy166II GTNNAC 5 cut(s) 164, 378, 466, 560, 768
Hpy188I TCNGA 9 cut(s) 202, 240, 440, 790, 811, 966, 1069, 1131, 1330
Hpy188III TCNNGA 8 cut(s) 35, 41, 144, 712, 824, 890, 1253, 1381
Hpy8I GTNNAC 5 cut(s) 164, 378, 466, 560, 768
HpyAV CCTTC 3 cut(s) 300, 733, 1266
HpyCH4III ACNGT 4 cut(s) 218, 514, 1138, 1371
HpyF10VI GCNNNNNNNGC 5 cut(s) 182, 323, 399, 1171, 1229
HpyF3I CTNAG 5 cut(s) 237, 272, 318, 437, 1130
Hsp92II CATG 9 cut(s) 22, 264, 358, 887, 1106, 1232, 1384, 1417, 1540
HspAI GCGC 1 cut(s) 760
Kpn2I TCCGGA 1 cut(s) 711
Kzo9I GATC 4 cut(s) 37, 450, 814, 943
LmnI GCTCC 5 cut(s) 643, 683, 1144, 1152, 1259
LweI GCATC 4 cut(s) 172, 220, 313, 397
MaeI CTAG 2 cut(s) 471, 824
MaeIII GTNAC 3 cut(s) 118, 1494, 1517
MalI GATC 4 cut(s) 39, 452, 816, 945
MboI GATC 4 cut(s) 37, 450, 814, 943
MflI RGATCY 1 cut(s) 37
MhlI GDGCHC 1 cut(s) 1149
MlsI TGGCCA 1 cut(s) 1223
MluCI AATT 9 cut(s) 193, 494, 725, 845, 898, 984, 1014, 1115, 1453
MluNI TGGCCA 1 cut(s) 1223
MlyI GAGTC 1 cut(s) 572
MmeI TCCRAC 1 cut(s) 205
Mox20I TGGCCA 1 cut(s) 1223
MroI TCCGGA 1 cut(s) 711
MscI TGGCCA 1 cut(s) 1223
MseI TTAA 6 cut(s) 84, 96, 102, 210, 282, 1392
MslI CAYNNNNRTG 3 cut(s) 17, 1107, 1254
Msp20I TGGCCA 1 cut(s) 1223
MspCI CTTAAG 1 cut(s) 83
MspI CCGG 3 cut(s) 167, 712, 745
MspR9I CCNGG 5 cut(s) 57, 395, 412, 572, 935
MvaI CCWGG 5 cut(s) 57, 395, 412, 572, 935
MwoI GCNNNNNNNGC 5 cut(s) 182, 323, 399, 1171, 1229
NcoI CCATGG 2 cut(s) 1102, 1413
NdeII GATC 4 cut(s) 37, 450, 814, 943
NlaIII CATG 9 cut(s) 22, 264, 358, 887, 1106, 1232, 1384, 1417, 1540
NlaIV GGNNCC 3 cut(s) 39, 392, 932
NmuCI GTSAC 1 cut(s) 118
NsbI TGCGCA 1 cut(s) 761
NspI RCATGY 2 cut(s) 22, 887
PagI TCATGA 1 cut(s) 1380
PciI ACATGT 1 cut(s) 883
PfeI GAWTC 3 cut(s) 203, 265, 1019
PflMI CCANNNNNTGG 1 cut(s) 34
PfoI TCCNGGA 1 cut(s) 933
PinAI ACCGGT 1 cut(s) 744
PleI GAGTC 1 cut(s) 572
PpsI GAGTC 1 cut(s) 572
PscI ACATGT 1 cut(s) 883
PsiI TTATAA 1 cut(s) 1202
Psp124BI GAGCTC 1 cut(s) 1149
Psp6I CCWGG 5 cut(s) 55, 393, 410, 570, 933
PspGI CCWGG 5 cut(s) 55, 393, 410, 570, 933
PspN4I GGNNCC 3 cut(s) 39, 392, 932
PspPI GGNCC 3 cut(s) 164, 568, 742
PsuI RGATCY 1 cut(s) 37
RsaI GTAC 4 cut(s) 290, 377, 467, 1427
RsaNI GTAC 4 cut(s) 289, 376, 466, 1426
RseI CAYNNNNRTG 3 cut(s) 17, 1107, 1254
SacI GAGCTC 1 cut(s) 1149
SaqAI TTAA 6 cut(s) 84, 96, 102, 210, 282, 1392
Sau3AI GATC 4 cut(s) 37, 450, 814, 943
Sau96I GGNCC 3 cut(s) 164, 568, 742
SchI GAGTC 1 cut(s) 572
ScrFI CCNGG 5 cut(s) 57, 395, 412, 572, 935
SduI GDGCHC 1 cut(s) 1149
SfaNI GCATC 4 cut(s) 172, 220, 313, 397
SfcI CTRYAG 1 cut(s) 348
SinI GGWCC 2 cut(s) 164, 742
SmiMI CAYNNNNRTG 3 cut(s) 17, 1107, 1254
SmlI CTYRAG 2 cut(s) 83, 890
SmoI CTYRAG 2 cut(s) 83, 890
Sse9I AATT 9 cut(s) 193, 494, 725, 845, 898, 984, 1014, 1115, 1453
SsiI CCGC 1 cut(s) 1174
SspI AATATT 2 cut(s) 372, 457
SspMI CTAG 2 cut(s) 471, 824
SstI GAGCTC 1 cut(s) 1149
StyD4I CCNGG 5 cut(s) 55, 393, 410, 570, 933
StyI CCWWGG 2 cut(s) 1102, 1413
TaaI ACNGT 4 cut(s) 218, 514, 1138, 1371
TaqI TCGA 1 cut(s) 843
TasI AATT 9 cut(s) 193, 494, 725, 845, 898, 984, 1014, 1115, 1453
TatI WGTACW 1 cut(s) 375
TfiI GAWTC 3 cut(s) 203, 265, 1019
Tru1I TTAA 6 cut(s) 84, 96, 102, 210, 282, 1392
Tru9I TTAA 6 cut(s) 84, 96, 102, 210, 282, 1392
TscAI CASTG 3 cut(s) 223, 801, 1475
TseFI GTSAC 1 cut(s) 118
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 6 cut(s) 348, 371, 549, 708, 734, 1397
TspGWI ACGGA 1 cut(s) 461
TspRI CASTG 3 cut(s) 223, 801, 1475
Van91I CCANNNNNTGG 1 cut(s) 34
Vha464I CTTAAG 1 cut(s) 83
VpaK11BI GGWCC 2 cut(s) 164, 742
XagI CCTNNNNNAGG 1 cut(s) 654
XapI RAATTY 7 cut(s) 193, 494, 725, 845, 898, 1115, 1453
XbaI TCTAGA 1 cut(s) 823
XceI RCATGY 2 cut(s) 22, 887
XcmI CCANNNNNNNNNTGG 1 cut(s) 31
XspI CTAG 2 cut(s) 471, 824
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.