Rorug07G0334800

Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0005460
Physical Location & Seq
Forward (+)
36741302 .. 36744322
3021 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0334800.1

Sequence Viewer

Length: 867 bp
ATGAAGAAGAGAACGATGTACGCCTCGGGACTGGCCCTCCTCTGCTTTGTGGTGCTCATGATCGTCACTCCTGCCATCCCTCAGTCTCAAGCTTACCATGATTTCGCTGATAAGCGCGATTTTTTCGGTATTCCCAATACCCTTAATGTGATTTCAAATTTCCCTTTCCTGGTCGTTGGTATCATTGGTCTCGTCCTTTGCTATTATGGGAACTATATGAAGCTCAGCTTGCAAGGTGAGCTTTGGGGTTGGACATGTTTCTACCTTGGTGTGGCTGCTGTTGGGATTGGATCCTCATATTATCATCTTAACCCAAATGACGCTACTCTAGTGTGGGATCGCTTGCCTATGACAATTGCATTCACATCAATCATTGCAATTTTCATCATTGAAAGGATTGATGAGCGGAAGGGAACCATTTCCATTTTACCTCTGCTTTTGGCGGGTGTAATAAGCATATTGTATTGGAGATTTTTTGATGACCTCCGCCCATATGCTCTGATCCAGTTTCTTCCTTGCATTGCCATTCCCCTGATGGCTATCTTGTTGCCCCCTATGTACACACATTCCACATATTGGCTTTGGGCAGCAGTGTTTTATCTTTTAGCCAAGGTGGAAGAAGCTGGTGATAAAGTGATCTACAAATGGACATATCATATTGTTAGTGGGCACACCCTTAAGCATCTGTGCGCCGCAATGGTTCCTGTCTTCTTGACGCTTATGCTTGCAAAGAGAACTATTGAAACAGAGAGGCAAAGTTTGCTCAAGATTTGGAAGGTTTCCTGGACCGAGTTTAGAAAGAAGGATAATGACGTGGCGGTAGAGAGTTACACCTATACTACTGTTCCGGTTGTGGAATCACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DEP DUF547 Glutaredoxin

Protein Analysis

288

Amino Acids

32.92

Weight (kDa)

8.48

Isoelectric Point (pI)

39.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ceramidase PF05875 47 - 158 2.2e-09 Ceramidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 576
AccBSI CCGCTC 1 cut(s) 406
AccII CGCG 1 cut(s) 117
AciI CCGC 5 cut(s) 406, 443, 487, 693, 818
AclWI GGATC 4 cut(s) 285, 298, 345, 496
AcsI RAATTY 1 cut(s) 157
AfaI GTAC 2 cut(s) 20, 560
AfiI CCNNNNNNNGG 3 cut(s) 169, 271, 576
AflII CTTAAG 1 cut(s) 677
AflIII ACRYGT 1 cut(s) 254
AgsI TTSAA 3 cut(s) 156, 392, 743
AjiI CACGTC 1 cut(s) 814
AjnI CCWGG 2 cut(s) 168, 782
AluBI AGCT 5 cut(s) 92, 223, 228, 241, 623
AluI AGCT 5 cut(s) 92, 223, 228, 241, 623
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 2 cut(s) 90, 194
AlwI GGATC 4 cut(s) 285, 298, 345, 496
Ama87I CYCGRG 1 cut(s) 25
AoxI GGCC 1 cut(s) 33
ApeKI GCWGC 2 cut(s) 275, 587
ApoI RAATTY 1 cut(s) 157
Asp700I GAANNNNTTC 1 cut(s) 418
AspLEI GCGC 2 cut(s) 117, 692
AspS9I GGNCC 2 cut(s) 34, 786
AsuHPI GGTGA 2 cut(s) 248, 638
AvaI CYCGRG 1 cut(s) 25
AvaII GGWCC 1 cut(s) 786
BaeGI GKGCMC 1 cut(s) 672
BamHI GGATCC 1 cut(s) 290
BbsI GAAGAC 1 cut(s) 700
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 2 cut(s) 262, 599
BccI CCATC 2 cut(s) 83, 529
BciT130I CCWGG 2 cut(s) 170, 784
BcoDI GTCTC 2 cut(s) 90, 194
BfaI CTAG 1 cut(s) 329
BfrI CTTAAG 1 cut(s) 677
BisI GCNGC 3 cut(s) 276, 588, 693
BlpI GCTNAGC 1 cut(s) 224
BlsI GCNGC 3 cut(s) 277, 589, 694
Bme1390I CCNGG 2 cut(s) 170, 784
Bme18I GGWCC 1 cut(s) 786
BmeT110I CYCGRG 1 cut(s) 25
BmgBI CACGTC 1 cut(s) 814
BmgT120I GGNCC 2 cut(s) 34, 786
BmiI GGNNCC 3 cut(s) 292, 415, 702
BmrFI CCNGG 2 cut(s) 170, 784
BmsI GCATC 1 cut(s) 691
BpiI GAAGAC 1 cut(s) 700
Bpu1102I GCTNAGC 1 cut(s) 224
BpuEI CTTGAG 2 cut(s) 72, 749
BsaBI GATNNNNATC 1 cut(s) 539
BsaI GGTCTC 1 cut(s) 194
BsaJI CCNNGG 3 cut(s) 24, 265, 609
BsaWI WCCGGW 1 cut(s) 847
BsaXI ACNNNNNCTCC 2 cut(s) 21, 51
Bsc4I CCNNNNNNNGG 3 cut(s) 169, 271, 576
Bse1I ACTGG 2 cut(s) 36, 505
Bse3DI GCAATG 3 cut(s) 372, 519, 702
Bse8I GATNNNNATC 1 cut(s) 539
BseBI CCWGG 2 cut(s) 170, 784
BseDI CCNNGG 3 cut(s) 24, 265, 609
BseGI GGATG 1 cut(s) 75
BseJI GATNNNNATC 1 cut(s) 539
BseLI CCNNNNNNNGG 3 cut(s) 169, 271, 576
BseMI GCAATG 3 cut(s) 372, 519, 702
BseMII CTCAG 2 cut(s) 95, 238
BseNI ACTGG 2 cut(s) 36, 505
BseRI GAGGAG 1 cut(s) 29
BseSI GKGCMC 1 cut(s) 672
BseXI GCAGC 2 cut(s) 262, 599
Bsh1236I CGCG 1 cut(s) 117
BshFI GGCC 1 cut(s) 35
BsiHKAI GWGCWC 1 cut(s) 57
BsiHKCI CYCGRG 1 cut(s) 25
BsiSI CCGG 1 cut(s) 848
BslFI GGGAC 1 cut(s) 42
BslI CCNNNNNNNGG 3 cut(s) 169, 271, 576
BsmAI GTCTC 2 cut(s) 90, 194
BsmFI GGGAC 1 cut(s) 42
BsmI GAATGC 1 cut(s) 359
BsnI GGCC 1 cut(s) 35
Bso31I GGTCTC 1 cut(s) 194
BsoBI CYCGRG 1 cut(s) 25
Bsp1286I GDGCHC 2 cut(s) 57, 672
Bsp1407I TGTACA 1 cut(s) 558
Bsp143I GATC 5 cut(s) 60, 290, 337, 501, 636
Bsp1720I GCTNAGC 1 cut(s) 224
BspACI CCGC 5 cut(s) 406, 443, 487, 693, 818
BspANI GGCC 1 cut(s) 35
BspCNI CTCAG 2 cut(s) 94, 237
BspFNI CGCG 1 cut(s) 117
BspHI TCATGA 1 cut(s) 57
BspLI GGNNCC 3 cut(s) 292, 415, 702
BspPI GGATC 4 cut(s) 285, 298, 345, 496
BspTI CTTAAG 1 cut(s) 677
BspTNI GGTCTC 1 cut(s) 194
BsrBI CCGCTC 1 cut(s) 406
BsrDI GCAATG 3 cut(s) 372, 519, 702
BsrGI TGTACA 1 cut(s) 558
BsrI ACTGG 2 cut(s) 36, 505
BssECI CCNNGG 3 cut(s) 24, 265, 609
BssMI GATC 5 cut(s) 60, 290, 337, 501, 636
BssT1I CCWWGG 2 cut(s) 265, 609
Bst2UI CCWGG 2 cut(s) 170, 784
Bst4CI ACNGT 1 cut(s) 844
Bst6I CTCTTC 1 cut(s) 2
BstAFI CTTAAG 1 cut(s) 677
BstAPI GCANNNNNTGC 1 cut(s) 760
BstAUI TGTACA 1 cut(s) 558
BstC8I GCNNGC 3 cut(s) 230, 344, 726
BstDEI CTNAG 2 cut(s) 81, 224
BstF5I GGATG 1 cut(s) 75
BstFNI CGCG 1 cut(s) 117
BstHHI GCGC 2 cut(s) 117, 692
BstKTI GATC 5 cut(s) 63, 293, 340, 504, 639
BstMAI GTCTC 2 cut(s) 90, 194
BstMBI GATC 5 cut(s) 60, 290, 337, 501, 636
BstMWI GCNNNNNNNGC 3 cut(s) 229, 238, 760
BstNI CCWGG 2 cut(s) 170, 784
BstNSI RCATGY 1 cut(s) 258
BstSCI CCNGG 2 cut(s) 168, 782
BstSLI GKGCMC 1 cut(s) 672
BstUI CGCG 1 cut(s) 117
BstV1I GCAGC 2 cut(s) 262, 599
BstV2I GAAGAC 1 cut(s) 700
BstX2I RGATCY 1 cut(s) 290
BstYI RGATCY 1 cut(s) 290
BsuRI GGCC 1 cut(s) 35
BtrI CACGTC 1 cut(s) 814
BtsCI GGATG 1 cut(s) 75
BtsI GCAGTG 1 cut(s) 597
BtsIMutI CAGTG 1 cut(s) 597
Cac8I GCNNGC 3 cut(s) 230, 344, 726
CciI TCATGA 1 cut(s) 57
CfoI GCGC 2 cut(s) 117, 692
Cfr13I GGNCC 2 cut(s) 34, 786
CseI GACGC 2 cut(s) 329, 724
Csp6I GTAC 2 cut(s) 19, 559
CviAII CATG 3 cut(s) 58, 98, 255
CviQI GTAC 2 cut(s) 19, 559
DdeI CTNAG 2 cut(s) 81, 224
DpnI GATC 5 cut(s) 62, 292, 339, 503, 638
DpnII GATC 5 cut(s) 60, 290, 337, 501, 636
Eam1104I CTCTTC 1 cut(s) 2
EarI CTCTTC 1 cut(s) 2
EciI GGCGGA 1 cut(s) 476
Eco130I CCWWGG 2 cut(s) 265, 609
Eco31I GGTCTC 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 786
Eco88I CYCGRG 1 cut(s) 25
EcoRII CCWGG 2 cut(s) 168, 782
EcoT14I CCWWGG 2 cut(s) 265, 609
ErhI CCWWGG 2 cut(s) 265, 609
FaeI CATG 3 cut(s) 61, 101, 258
FalI AAGNNNNNCTT 4 cut(s) 212, 244, 225, 257
FaqI GGGAC 1 cut(s) 42
FatI CATG 3 cut(s) 57, 97, 254
FauI CCCGC 1 cut(s) 436
FauNDI CATATG 1 cut(s) 493
Fnu4HI GCNGC 3 cut(s) 276, 588, 693
FokI GGATG 1 cut(s) 62
Fsp4HI GCNGC 3 cut(s) 276, 588, 693
FspBI CTAG 1 cut(s) 329
GlaI GCGC 2 cut(s) 116, 691
GluI GCNGC 3 cut(s) 276, 588, 693
HaeIII GGCC 1 cut(s) 35
HapII CCGG 1 cut(s) 848
HgaI GACGC 2 cut(s) 329, 724
HhaI GCGC 2 cut(s) 117, 692
Hin1II CATG 3 cut(s) 61, 101, 258
Hin6I GCGC 2 cut(s) 115, 690
HinP1I GCGC 2 cut(s) 115, 690
HindIII AAGCTT 1 cut(s) 90
HinfI GANTC 1 cut(s) 857
HpaII CCGG 1 cut(s) 848
HphI GGTGA 2 cut(s) 248, 638
Hpy166II GTNNAC 1 cut(s) 561
Hpy188I TCNGA 1 cut(s) 501
Hpy188III TCNNGA 4 cut(s) 27, 58, 712, 766
Hpy8I GTNNAC 1 cut(s) 561
HpyAV CCTTC 3 cut(s) 403, 769, 796
HpyCH4III ACNGT 1 cut(s) 844
HpyCH4IV ACGT 1 cut(s) 813
HpyCH4V TGCA 5 cut(s) 232, 359, 377, 519, 728
HpyF10VI GCNNNNNNNGC 3 cut(s) 229, 238, 760
HpyF3I CTNAG 2 cut(s) 81, 224
HpySE526I ACGT 1 cut(s) 813
Hsp92II CATG 3 cut(s) 61, 101, 258
HspAI GCGC 2 cut(s) 115, 690
Kzo9I GATC 5 cut(s) 60, 290, 337, 501, 636
Lsp1109I GCAGC 2 cut(s) 262, 599
LweI GCATC 1 cut(s) 691
MaeI CTAG 1 cut(s) 329
MaeII ACGT 1 cut(s) 813
MaeIII GTNAC 2 cut(s) 64, 827
MalI GATC 5 cut(s) 62, 292, 339, 503, 638
MbiI CCGCTC 1 cut(s) 406
MboI GATC 5 cut(s) 60, 290, 337, 501, 636
MboII GAAGA 5 cut(s) 16, 19, 503, 629, 700
MfeI CAATTG 1 cut(s) 354
MflI RGATCY 1 cut(s) 290
MhlI GDGCHC 2 cut(s) 57, 672
MluCI AATT 3 cut(s) 157, 354, 378
MmeI TCCRAC 1 cut(s) 230
MnlI CCTC 8 cut(s) 34, 47, 50, 90, 304, 441, 494, 744
MroXI GAANNNNTTC 1 cut(s) 418
MseI TTAA 3 cut(s) 144, 309, 678
MspCI CTTAAG 1 cut(s) 677
MspI CCGG 1 cut(s) 848
MspR9I CCNGG 2 cut(s) 170, 784
MunI CAATTG 1 cut(s) 354
Mva1269I GAATGC 1 cut(s) 359
MvaI CCWGG 2 cut(s) 170, 784
MvnI CGCG 1 cut(s) 117
MwoI GCNNNNNNNGC 3 cut(s) 229, 238, 760
NdeI CATATG 1 cut(s) 493
NdeII GATC 5 cut(s) 60, 290, 337, 501, 636
NlaIII CATG 3 cut(s) 61, 101, 258
NlaIV GGNNCC 3 cut(s) 292, 415, 702
NmuCI GTSAC 1 cut(s) 64
NspI RCATGY 1 cut(s) 258
PagI TCATGA 1 cut(s) 57
PciI ACATGT 1 cut(s) 254
PctI GAATGC 1 cut(s) 359
PdmI GAANNNNTTC 1 cut(s) 418
PfeI GAWTC 1 cut(s) 857
PflMI CCANNNNNTGG 1 cut(s) 576
PfoI TCCNGGA 1 cut(s) 782
PkrI GCNGC 3 cut(s) 277, 589, 694
PscI ACATGT 1 cut(s) 254
Psp6I CCWGG 2 cut(s) 168, 782
PspGI CCWGG 2 cut(s) 168, 782
PspN4I GGNNCC 3 cut(s) 292, 415, 702
PspPI GGNCC 2 cut(s) 34, 786
PsuI RGATCY 1 cut(s) 290
RsaI GTAC 2 cut(s) 20, 560
RsaNI GTAC 2 cut(s) 19, 559
SaqAI TTAA 3 cut(s) 144, 309, 678
SatI GCNGC 3 cut(s) 276, 588, 693
Sau3AI GATC 5 cut(s) 60, 290, 337, 501, 636
Sau96I GGNCC 2 cut(s) 34, 786
ScrFI CCNGG 2 cut(s) 170, 784
SduI GDGCHC 2 cut(s) 57, 672
SfaNI GCATC 1 cut(s) 691
SinI GGWCC 1 cut(s) 786
SmlI CTYRAG 3 cut(s) 87, 677, 764
SmoI CTYRAG 3 cut(s) 87, 677, 764
Sse9I AATT 3 cut(s) 157, 354, 378
SsiI CCGC 5 cut(s) 406, 443, 487, 693, 818
SspMI CTAG 1 cut(s) 329
StyD4I CCNGG 2 cut(s) 168, 782
StyI CCWWGG 2 cut(s) 265, 609
TaaI ACNGT 1 cut(s) 844
TaiI ACGT 1 cut(s) 816
TaqII GACCGA 1 cut(s) 803
TasI AATT 3 cut(s) 157, 354, 378
TatI WGTACW 1 cut(s) 558
TauI GCSGC 1 cut(s) 695
TfiI GAWTC 1 cut(s) 857
Tru1I TTAA 3 cut(s) 144, 309, 678
Tru9I TTAA 3 cut(s) 144, 309, 678
TscAI CASTG 1 cut(s) 597
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 2 cut(s) 275, 587
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 3 cut(s) 17, 233, 373
TspRI CASTG 1 cut(s) 597
Van91I CCANNNNNTGG 1 cut(s) 576
Vha464I CTTAAG 1 cut(s) 677
VpaK11BI GGWCC 1 cut(s) 786
XapI RAATTY 1 cut(s) 157
XceI RCATGY 1 cut(s) 258
XcmI CCANNNNNNNNNTGG 1 cut(s) 532
XmnI GAANNNNTTC 1 cut(s) 418
XspI CTAG 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.