Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005460

Physical Location & Seq

Genomic Coordinates Forward (+)

550613 .. 559123

Gene Structure 8511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g01010.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3081 bp

ATGAGCGGCAGCAATGCTCCTAAGAGAAGTACGGTGACGATGGACTCCACTAGGTCCCCCCACACCCGATCCAACTCCCTACCCGACCCGAGCTCCAGCAGCAGCAGCACCAGCCAGAGCCTCGCCTCCATCCTCAACAACCCCAATGCCTCCGACTCCTCCTCCTCCTGGTCCGCCTGGTGGTCCTCCTCCGCCTCCGTCGCCGCCCCGCCCGAATTCCTCCCCCTCCTCCCCAAATCCGCCTCCGACTCCCTCACCCGATCTGACTTCCAGCCCTACCTCTCCTCCATCTCCGATCACTACAACCGCTTCGACGACATACTCAACCACCTCAAGAAGGAGAGTCTCGACGACCTCGACTCCATCGGCGGCCAGGGCGAGGCTCTCGTCGCGTGTCTCCGCGAGGTCCCCGCCCTCTATTTCAAGGAGGACTTCGCTCTCGAAGACGGCGCCACCTTCAAGTCGGCGTGCCCGTTCTCCGGCGCGGCGGAGAACCTCGTCCTGCAGGAGAAGCTGACGCATTACTTGGACGTGGTGGAGCTTCACCTGGTGAAGGAGATCTCGCTGCGATCGAACTCGTTTTTCGAGGCGCAGGGACAGCTGGAGGACTTGAATGTGAAGATCGTGGAGGGATGCAATCGGATAAAGGAGCTCAAGGAGACCATTTCGCTGTTGGATGTGGATTTGGTGGACTCTGCTAGGCAGATTCAGGAGCTCAATGTTACCAGGAGTAATTTGTTGGCTCTGCAACAGAAACTGAGGCTCATTCTATATGTCAATCAAGCTCTTTCGGCACTTAAACTGCTTGTTGCGTCTGCAGATTGTGCTGGAGCTTTGGATGTCACAGATGACCTGCAACATTTGCTGGACGGGGATGAACTTACTGGTCTACATTGCTTTCATCACCTCAGGGATCGTGTAGCAGCTTCAATTGACTCCATAAACAGCATTCTGTCTTCAGACTTTATGCGTGCTTCAATACATGATGCTGGAGATACAGACACTATAATTATATCAAAAGCAAAAGCAAGAGCATCCATACTCATGAATGGGGAAGATGGTGAAGTTAAGTTGGACGATGAAGAAACCTCCAATTATCAAGATCGTCTTCTTCCGATCATCATTGGATTACTTAGAACAGCTAAGCTCCCTTCTGTGTTGAGGCTATATCGTGACCAACTCACGGCTGATATGAAGAATGCTATTAAGAATGCAGTTGCAGAGCTGCTTCCCATTCTAGTTTCCCGACCTCTGGAATCCGATTTTACGCCTGGAGAGCGAGTTGCAGATGCAGACGGTATTGGTGCATCACTTGCAAGCAAGTTGAGGAGCCTGTCATCTGAAAGCTTTGTTCAACTTTTAAGTGCTATCTTTCTGATTGTAAGGGCACATCTAGTACGGTCTGCTGAAGTGAAGAAGGCTATTGAGTGGATTATGTGCAACCTTGATGGTCACTATGCATCTGATTCTGTAGCCGCTGCACTTGCAGTTGGTGCTGTGGCTGCAGAAACAGCTCAAGAAAGTGATGGCCAAGGTGGTTTGCTTATGTCGTATTCATCTCCGAGAGTTGGTGCAAAGGCCCTTTCTTTCCAAGGAAAAGCAAATGATGCAACAAGTCCTTCTACTACATCTAAGAATTTTAGAGCTGATGTGTTACGAGAAAACACAGAAGCCGTTGTTGCAGCATGTGATGCTGCTCAGGGAAGATGGGCAAAGCTACTTGGGGTTCGTGCTCTTCTTCATCCAAAGTTGAGACTACAGGAGTTTTTAAGCATATATAATATCACACAAGAGTTTATAACTGCTACCGAGAAGGTAGGGGGAAGGCCAGGATTTAGCATTAGGGGAACACTACAGTCACAGGCCAAAGCCTTCCTTGATTTTCAGCATGAATCACGAATGACCAAGATTAAGGCAGTTCTAGACCAAGAAACGTGGGTGGAAGTAGATGTTCCTGATGAATTTCAGGTTATTGTCACTTCATTATTTTGTTCTGAAGAATCGGTAACTGAGAACCTGGATGCTATCCATAGTAGTTCAGAAACAAACTACACTGAGGTGGCCAGCAACAATAGTTCAGATGCGGTGGATACAGGACCGTCGATTACAGAAATGCAAATTAAGCGAACTGATTCAACTGAATTATCTATGGATATTACTGGAAAGAGTAAGTCTACATCTGCTGATGGAGCTGGAAAGAATAAGGCTGATGTTACAAACTCTGTGGCTCAGAACAACCACAGCAACATGAAGGAGAGGGGAAAATCAACTTCCCAAACCCTATCATATAAAGGTGTTGGTTTTCACATGGTAAACTGTGGCCTGATATTGATGAAGATGTTGTCAGAGTACATTGATATGAACAATTTTTTTCCAGTACTCTCCTCAGAAGTTGTTCATCGTATTGTTGAAATTTTAAAATTTTTCAATACAAGAACATGTCAGCTTGTTCTTGGTGCTGGTGCCATGCAGGTATCTGGTCTGAAGTCGATCACTTCTAAACACTTGGCCTTGGCAAGTCAAGTCATCAGTTTCACGTATGCTATTATTCCTGAACTCAGGCAAATTCTTTTTCTGAAAGTACCTGAGACAAGAAAGGCAATGTTGCTATCTGAAATTGATCGGGTTGCTCAGGATTATAAGGTTCATAGAGATGAAATACATACAAAGCTGGTTCAGATCATGAGAGAAAGGTTATTGGTTCATCTACGTGGGTTGCCTCAAATTGTAGAGAGCTGGAATAGACCAGAAGATGCTGACCCACAGCCTAGTCAGTTTGCTCGATCACTTACCAAGGAAGTTGGATACTTGCAACGTGTTCTAACTCGAACTTTACATGAGGTTGATGTTCAAGCAATTTTCAGGCAAGTGATTATAATTTTTCATTCACAAATTTCAGAAGCACTTTCACGCTTAGAGATCAGCACACCACAAGCCAAGGACAGGCTCTGTCGTGATGTTAAGCACATTCTTGGATGCATTCGATCTTTGCCTTCTGATAAAATGAGTGAATCTGGTACGCCAAACTGGGGTCAACTAGATGAATTTTTGGTGCAGAGATTTGGGTCAGAAGCTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0000938 GO:0001894 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0006892 GO:0006896 GO:0006996 GO:0007010 GO:0007034 GO:0007041 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0019905 GO:0031090 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032501 GO:0032588 GO:0032991 GO:0040008 GO:0042147 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045103 GO:0045104 GO:0046907 GO:0048193 GO:0048471 GO:0048871 GO:0048872 GO:0048873 GO:0050789 GO:0050879 GO:0050881 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060052 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps54

Protein Analysis

1027

Amino Acids

112.69

Weight (kDa)

5.55

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vps54	PF07928	768 - 898	7.7e-47	Vps54-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19490 AT4G19490
fragaria_vesca	FvH4_6g01010 FvH4_6g01010 FvH4_6g01010
malus_domestica	MD04G1237800.v1.1 MD12G1256000.v1.1
prunus_persica	Prupe.6G356900_v2.0.a1 Prupe.6G356900_v2.0.a1 Prupe.6G356900_v2.0.a1 Prupe.6G356900_v2.0.a1
pyrus_communis	pycom04g21100 pycom12g23480
rosa_chinensis	RchiOBHm_Chr3g0448451
rosa_laevigata	RLG00000000687 RLG00000025905
rosa_multiflora	Rmu_sc0003308.1_g000012 Rmu_sc0011979.1_g000005
rosa_roxburghii	Rroxscaffold_6G00426680
rosa_rugosa	Rorug02G0612500 Rorug02G0612600 Rorug02G0612600 Rorug07G0334800
rosa_samantha	Rh3AG012000 Rh3BG011800 Rh3CG011500 Rh3DG012200 Rh7BG461900
rosa_wichuraiana	Rw3G000930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1799, 2640, 2876
Acc36I	ACCTGC	2 cut(s)	861, 2461
AccB1I	GGYRCC	2 cut(s)	449, 2462
AccBSI	CCGCTC	1 cut(s)	6
AccI	GTMKAC	2 cut(s)	889, 2174
AccII	CGCG	3 cut(s)	392, 402, 485
AclWI	GGATC	2 cut(s)	63, 921
AcoI	YGGCCR	3 cut(s)	370, 1528, 2061
AcsI	RAATTY	8 cut(s)	215, 1636, 1961, 2412, 2420, 2565, 2892, 3044
AcuI	CTGAAG	4 cut(s)	942, 1428, 2016, 2504
AcyI	GRCGYC	1 cut(s)	450
AdeI	CACNNNGTG	1 cut(s)	550
AfaI	GTAC	6 cut(s)	31, 1398, 2351, 2379, 2583, 3019
AflIII	ACRYGT	2 cut(s)	2438, 2815
AjiI	CACGTC	1 cut(s)	532
AjnI	CCWGG	8 cut(s)	167, 176, 372, 546, 725, 1270, 1828, 2016
AleI	CACNNNNGTG	1 cut(s)	2057
Alw21I	GWGCWC	4 cut(s)	95, 654, 717, 1735
Alw26I	GTCTC	5 cut(s)	350, 401, 653, 1747, 2582
AlwI	GGATC	2 cut(s)	63, 921
AlwNI	CAGNNNCTG	2 cut(s)	757, 2949
Ama87I	CYCGRG	1 cut(s)	88
AoxI	GGCC	8 cut(s)	370, 1528, 1578, 1826, 1863, 2061, 2320, 2508
ApoI	RAATTY	8 cut(s)	215, 1636, 1961, 2412, 2420, 2565, 2892, 3044
Asp700I	GAANNNNTTC	2 cut(s)	2131, 2394
AspLEI	GCGC	3 cut(s)	452, 485, 592
AspS9I	GGNCC	6 cut(s)	54, 171, 183, 406, 1579, 2096
AsuHPI	GGTGA	6 cut(s)	46, 247, 536, 562, 896, 1073
AvaI	CYCGRG	1 cut(s)	88
AvaII	GGWCC	5 cut(s)	54, 171, 183, 406, 2096
AxyI	CCTNAGG	1 cut(s)	908
BaeGI	GKGCMC	2 cut(s)	473, 1390
BalI	TGGCCA	2 cut(s)	1530, 2063
BanI	GGYRCC	2 cut(s)	449, 2462
BanII	GRGCYC	3 cut(s)	95, 654, 717
BbsI	GAAGAC	3 cut(s)	450, 948, 1100
Bbv12I	GWGCWC	4 cut(s)	95, 654, 717, 1735
BccI	CCATC	9 cut(s)	34, 137, 296, 371, 1052, 1442, 1520, 1701, 2180
BceAI	ACGGC	3 cut(s)	463, 1200, 1658
BciT130I	CCWGG	8 cut(s)	169, 178, 374, 548, 727, 1272, 1830, 2018
BciVI	GTATCC	2 cut(s)	2083, 2798
BcoDI	GTCTC	5 cut(s)	350, 401, 653, 1747, 2582
BfaI	CTAG	8 cut(s)	51, 699, 1238, 1394, 1922, 2769, 3038, 3075
BfmI	CTRYAG	6 cut(s)	503, 816, 1470, 1503, 1757, 1853
BfoI	RGCGCY	1 cut(s)	453
BfuAI	ACCTGC	2 cut(s)	861, 2461
BfuI	GTATCC	2 cut(s)	2083, 2798
BglII	AGATCT	1 cut(s)	558
BlpI	GCTNAGC	1 cut(s)	1143
BmcAI	AGTACT	1 cut(s)	2379
Bme1390I	CCNGG	8 cut(s)	169, 178, 374, 548, 727, 1272, 1830, 2018
Bme18I	GGWCC	5 cut(s)	54, 171, 183, 406, 2096
BmeT110I	CYCGRG	1 cut(s)	88
BmgBI	CACGTC	1 cut(s)	532
BmgT120I	GGNCC	6 cut(s)	54, 171, 183, 406, 1579, 2096
BmiI	GGNNCC	5 cut(s)	56, 408, 451, 1331, 2464
BmrFI	CCNGG	8 cut(s)	169, 178, 374, 548, 727, 1272, 1830, 2018
BmrI	ACTGGG	1 cut(s)	3037
BmuI	ACTGGG	1 cut(s)	3037
BpiI	GAAGAC	3 cut(s)	450, 948, 1100
BpmI	CTGGAG	5 cut(s)	79, 623, 849, 1011, 1293
Bpu10I	CCTNAGC	2 cut(s)	1698, 2631
Bpu1102I	GCTNAGC	1 cut(s)	1143
BpuEI	CTTGAG	3 cut(s)	317, 638, 1500
BsaAI	YACGTR	2 cut(s)	2538, 2711
BsaHI	GRCGYC	1 cut(s)	450
BsaI	GGTCTC	1 cut(s)	653
BsaJI	CCNNGG	6 cut(s)	373, 1531, 1591, 2511, 2793, 2937
Bse1I	ACTGG	4 cut(s)	889, 2164, 2375, 3032
Bse21I	CCTNAGG	1 cut(s)	908
Bse3DI	GCAATG	3 cut(s)	19, 892, 2607
BseBI	CCWGG	8 cut(s)	169, 178, 374, 548, 727, 1272, 1830, 2018
BseDI	CCNNGG	6 cut(s)	373, 1531, 1591, 2511, 2793, 2937
BseGI	GGATG	9 cut(s)	129, 638, 682, 844, 880, 1034, 1741, 2026, 2981
BseMI	GCAATG	3 cut(s)	19, 892, 2607
BseNI	ACTGG	4 cut(s)	889, 2164, 2375, 3032
BseRI	GAGGAG	8 cut(s)	148, 151, 154, 178, 218, 274, 1342, 2374
BseSI	GKGCMC	2 cut(s)	473, 1390
BsgI	GTGCAG	2 cut(s)	1464, 3074
Bsh1236I	CGCG	3 cut(s)	392, 402, 485
Bsh1285I	CGRYCG	1 cut(s)	572
BshFI	GGCC	8 cut(s)	372, 1530, 1580, 1828, 1865, 2063, 2322, 2510
BshNI	GGYRCC	2 cut(s)	449, 2462
BsiEI	CGRYCG	1 cut(s)	572
BsiHKAI	GWGCWC	4 cut(s)	95, 654, 717, 1735
BsiHKCI	CYCGRG	1 cut(s)	88
BsiSI	CCGG	1 cut(s)	480
BslFI	GGGAC	3 cut(s)	40, 392, 609
BsmAI	GTCTC	5 cut(s)	350, 401, 653, 1747, 2582
BsmFI	GGGAC	3 cut(s)	40, 392, 609
BsmI	GAATGC	4 cut(s)	948, 1204, 1216, 2979
BsnI	GGCC	8 cut(s)	372, 1530, 1580, 1828, 1865, 2063, 2322, 2510
Bso31I	GGTCTC	1 cut(s)	653
BsoBI	CYCGRG	1 cut(s)	88
Bsp1286I	GDGCHC	6 cut(s)	95, 473, 654, 717, 1390, 1735
Bsp1720I	GCTNAGC	1 cut(s)	1143
BspANI	GGCC	8 cut(s)	372, 1530, 1580, 1828, 1865, 2063, 2322, 2510
BspFNI	CGCG	3 cut(s)	392, 402, 485
BspHI	TCATGA	2 cut(s)	1044, 2682
BspLI	GGNNCC	5 cut(s)	56, 408, 451, 1331, 2464
BspMAI	CTGCAG	3 cut(s)	507, 820, 1507
BspMI	ACCTGC	2 cut(s)	861, 2461
BspPI	GGATC	2 cut(s)	63, 921
BspQI	GCTCTTC	1 cut(s)	1740
BspT107I	GGYRCC	2 cut(s)	449, 2462
BspTNI	GGTCTC	1 cut(s)	653
BsrBI	CCGCTC	1 cut(s)	6
BsrDI	GCAATG	3 cut(s)	19, 892, 2607
BsrI	ACTGG	4 cut(s)	889, 2164, 2375, 3032
BssECI	CCNNGG	6 cut(s)	373, 1531, 1591, 2511, 2793, 2937
BssNI	GRCGYC	1 cut(s)	450
BssT1I	CCWWGG	5 cut(s)	1531, 1591, 2511, 2793, 2937
Bst2UI	CCWGG	8 cut(s)	169, 178, 374, 548, 727, 1272, 1830, 2018
Bst4CI	ACNGT	6 cut(s)	34, 1298, 1401, 1857, 2100, 2318
Bst6I	CTCTTC	1 cut(s)	1740
BstACI	GRCGYC	1 cut(s)	450
BstAPI	GCANNNNNTGC	6 cut(s)	824, 862, 1313, 1493, 1607, 1691
BstBAI	YACGTR	2 cut(s)	2538, 2711
BstC8I	GCNNGC	4 cut(s)	469, 972, 1318, 2065
BstENI	CCTNNNNNAGG	2 cut(s)	335, 551
BstF5I	GGATG	9 cut(s)	129, 638, 682, 844, 880, 1034, 1741, 2026, 2981
BstFNI	CGCG	3 cut(s)	392, 402, 485
BstH2I	RGCGCY	1 cut(s)	453
BstHHI	GCGC	3 cut(s)	452, 485, 592
BstMAI	GTCTC	5 cut(s)	350, 401, 653, 1747, 2582
BstMCI	CGRYCG	1 cut(s)	572
BstNI	CCWGG	8 cut(s)	169, 178, 374, 548, 727, 1272, 1830, 2018
BstNSI	RCATGY	2 cut(s)	1689, 2442
BstSCI	CCNGG	8 cut(s)	167, 176, 372, 546, 725, 1270, 1828, 2016
BstSFI	CTRYAG	6 cut(s)	503, 816, 1470, 1503, 1757, 1853
BstSLI	GKGCMC	2 cut(s)	473, 1390
BstUI	CGCG	3 cut(s)	392, 402, 485
BstV2I	GAAGAC	3 cut(s)	450, 948, 1100
BstX2I	RGATCY	1 cut(s)	558
BstYI	RGATCY	1 cut(s)	558
Bsu36I	CCTNAGG	1 cut(s)	908
BsuI	GTATCC	2 cut(s)	2083, 2798
BsuRI	GGCC	8 cut(s)	372, 1530, 1580, 1828, 1865, 2063, 2322, 2510
BtrI	CACGTC	1 cut(s)	532
BtsCI	GGATG	9 cut(s)	129, 638, 682, 844, 880, 1034, 1741, 2026, 2981
BtsIMutI	CAGTG	1 cut(s)	2052
BveI	ACCTGC	2 cut(s)	861, 2461
Cac8I	GCNNGC	4 cut(s)	469, 972, 1318, 2065
CaiI	CAGNNNCTG	2 cut(s)	757, 2949
CciI	TCATGA	2 cut(s)	1044, 2682
CfoI	GCGC	3 cut(s)	452, 485, 592
Cfr13I	GGNCC	6 cut(s)	54, 171, 183, 406, 1579, 2096
CseI	GACGC	2 cut(s)	526, 801
CsiI	ACCWGGT	1 cut(s)	546
Csp6I	GTAC	6 cut(s)	30, 1397, 2350, 2378, 2582, 3018
CspCI	CAANNNNNGTGG	4 cut(s)	1916, 1951, 2205, 2240
CviQI	GTAC	6 cut(s)	30, 1397, 2350, 2378, 2582, 3018
DinI	GGCGCC	1 cut(s)	451
DraI	TTTAAA	1 cut(s)	2418
DraIII	CACNNNGTG	1 cut(s)	550
EaeI	YGGCCR	3 cut(s)	370, 1528, 2061
Eam1104I	CTCTTC	1 cut(s)	1740
EarI	CTCTTC	1 cut(s)	1740
EciI	GGCGGA	4 cut(s)	163, 181, 229, 503
Ecl136II	GAGCTC	3 cut(s)	93, 652, 715
Eco130I	CCWWGG	5 cut(s)	1531, 1591, 2511, 2793, 2937
Eco24I	GRGCYC	3 cut(s)	95, 654, 717
Eco31I	GGTCTC	1 cut(s)	653
Eco47I	GGWCC	5 cut(s)	54, 171, 183, 406, 2096
Eco53kI	GAGCTC	3 cut(s)	93, 652, 715
Eco57I	CTGAAG	4 cut(s)	942, 1428, 2016, 2504
Eco81I	CCTNAGG	1 cut(s)	908
Eco88I	CYCGRG	1 cut(s)	88
EcoICRI	GAGCTC	3 cut(s)	93, 652, 715
EcoNI	CCTNNNNNAGG	2 cut(s)	335, 551
EcoO109I	RGGNCCY	3 cut(s)	54, 406, 1579
EcoRI	GAATTC	1 cut(s)	215
EcoRII	CCWGG	8 cut(s)	167, 176, 372, 546, 725, 1270, 1828, 2016
EcoT14I	CCWWGG	5 cut(s)	1531, 1591, 2511, 2793, 2937
EcoT22I	ATGCAT	2 cut(s)	1462, 2981
EcoT38I	GRGCYC	3 cut(s)	95, 654, 717
EgeI	GGCGCC	1 cut(s)	451
EheI	GGCGCC	1 cut(s)	451
ErhI	CCWWGG	5 cut(s)	1531, 1591, 2511, 2793, 2937
FalI	AAGNNNNNCTT	6 cut(s)	416, 448, 1092, 1124, 1860, 1892
FaqI	GGGAC	3 cut(s)	40, 392, 609
FauI	CCCGC	2 cut(s)	216, 418
FblI	GTMKAC	2 cut(s)	889, 2174
FokI	GGATG	9 cut(s)	116, 645, 689, 851, 887, 1021, 1728, 2033, 2988
FriOI	GRGCYC	3 cut(s)	95, 654, 717
FspBI	CTAG	8 cut(s)	51, 699, 1238, 1394, 1922, 2769, 3038, 3075
GlaI	GCGC	3 cut(s)	451, 484, 591
GsuI	CTGGAG	5 cut(s)	79, 623, 849, 1011, 1293
HaeII	RGCGCY	1 cut(s)	453
HaeIII	GGCC	8 cut(s)	372, 1530, 1580, 1828, 1865, 2063, 2322, 2510
HapII	CCGG	1 cut(s)	480
HgaI	GACGC	2 cut(s)	526, 801
HhaI	GCGC	3 cut(s)	452, 485, 592
Hin1I	GRCGYC	1 cut(s)	450
Hin6I	GCGC	3 cut(s)	450, 483, 590
HinP1I	GCGC	3 cut(s)	450, 483, 590
HincII	GTYRAC	1 cut(s)	3035
HindII	GTYRAC	1 cut(s)	3035
HindIII	AAGCTT	1 cut(s)	1345
HpaII	CCGG	1 cut(s)	480
HphI	GGTGA	6 cut(s)	46, 247, 536, 562, 896, 1073
Hpy166II	GTNNAC	5 cut(s)	691, 890, 2175, 2314, 3035
Hpy8I	GTNNAC	5 cut(s)	691, 890, 2175, 2314, 3035
Hpy99I	CGWCG	5 cut(s)	203, 317, 353, 392, 2104
HpyCH4III	ACNGT	6 cut(s)	34, 1298, 1401, 1857, 2100, 2318
HpyCH4IV	ACGT	5 cut(s)	531, 1934, 2537, 2710, 2815
HpySE526I	ACGT	5 cut(s)	531, 1934, 2537, 2710, 2815
Hsp92I	GRCGYC	1 cut(s)	450
HspAI	GCGC	3 cut(s)	450, 483, 590
KasI	GGCGCC	1 cut(s)	449
LguI	GCTCTTC	1 cut(s)	1740
LmnI	GCTCC	9 cut(s)	22, 98, 538, 649, 712, 830, 1152, 1329, 2189
MabI	ACCWGGT	1 cut(s)	546
MaeI	CTAG	8 cut(s)	51, 699, 1238, 1394, 1922, 2769, 3038, 3075
MaeII	ACGT	5 cut(s)	531, 1934, 2537, 2710, 2815
MbiI	CCGCTC	1 cut(s)	6
MfeI	CAATTG	1 cut(s)	930
MflI	RGATCY	1 cut(s)	558
MhlI	GDGCHC	6 cut(s)	95, 473, 654, 717, 1390, 1735
MlsI	TGGCCA	2 cut(s)	1530, 2063
MluNI	TGGCCA	2 cut(s)	1530, 2063
Mly113I	GGCGCC	1 cut(s)	450
MlyI	GAGTC	7 cut(s)	38, 149, 242, 352, 353, 686, 929
MmeI	TCCRAC	6 cut(s)	96, 177, 270, 654, 1053, 2782
Mox20I	TGGCCA	2 cut(s)	1530, 2063
Mph1103I	ATGCAT	2 cut(s)	1462, 2981
MroXI	GAANNNNTTC	2 cut(s)	2131, 2394
MscI	TGGCCA	2 cut(s)	1530, 2063
MslI	CAYNNNNRTG	5 cut(s)	1043, 2057, 2357, 2652, 2709
Msp20I	TGGCCA	2 cut(s)	1530, 2063
MspA1I	CMGCKG	2 cut(s)	601, 1478
MspI	CCGG	1 cut(s)	480
MspR9I	CCNGG	8 cut(s)	169, 178, 374, 548, 727, 1272, 1830, 2018
MunI	CAATTG	1 cut(s)	930
Mva1269I	GAATGC	4 cut(s)	948, 1204, 1216, 2979
MvaI	CCWGG	8 cut(s)	169, 178, 374, 548, 727, 1272, 1830, 2018
MvnI	CGCG	3 cut(s)	392, 402, 485
NarI	GGCGCC	1 cut(s)	450
NlaIV	GGNNCC	5 cut(s)	56, 408, 451, 1331, 2464
NmuCI	GTSAC	6 cut(s)	34, 841, 1172, 1451, 1857, 1975
NsiI	ATGCAT	2 cut(s)	1462, 2981
NspI	RCATGY	2 cut(s)	1689, 2442
OliI	CACNNNNGTG	1 cut(s)	2057
PagI	TCATGA	2 cut(s)	1044, 2682
PciI	ACATGT	1 cut(s)	2438
PciSI	GCTCTTC	1 cut(s)	1740
PcsI	WCGNNNNNNNCGW	3 cut(s)	354, 470, 569
PctI	GAATGC	4 cut(s)	948, 1204, 1216, 2979
PdmI	GAANNNNTTC	2 cut(s)	2131, 2394
PfeI	GAWTC	7 cut(s)	706, 1256, 1466, 1892, 2000, 2132, 3011
Ple19I	CGATCG	1 cut(s)	572
PleI	GAGTC	7 cut(s)	38, 149, 242, 351, 353, 686, 929
PluTI	GGCGCC	1 cut(s)	453
PpsI	GAGTC	7 cut(s)	38, 149, 242, 351, 353, 686, 929
Ppu21I	YACGTR	2 cut(s)	2538, 2711
PpuMI	RGGWCCY	2 cut(s)	54, 406
PscI	ACATGT	1 cut(s)	2438
PsiI	TTATAA	3 cut(s)	1799, 2640, 2876
Psp124BI	GAGCTC	3 cut(s)	95, 654, 717
Psp5II	RGGWCCY	2 cut(s)	54, 406
Psp6I	CCWGG	8 cut(s)	167, 176, 372, 546, 725, 1270, 1828, 2016
PspGI	CCWGG	8 cut(s)	167, 176, 372, 546, 725, 1270, 1828, 2016
PspN4I	GGNNCC	5 cut(s)	56, 408, 451, 1331, 2464
PspPI	GGNCC	6 cut(s)	54, 171, 183, 406, 1579, 2096
PspPPI	RGGWCCY	2 cut(s)	54, 406
PstI	CTGCAG	3 cut(s)	507, 820, 1507
PstNI	CAGNNNCTG	2 cut(s)	757, 2949
PsuI	RGATCY	1 cut(s)	558
PvuI	CGATCG	1 cut(s)	572
PvuII	CAGCTG	1 cut(s)	601
RsaI	GTAC	6 cut(s)	31, 1398, 2351, 2379, 2583, 3019
RsaNI	GTAC	6 cut(s)	30, 1397, 2350, 2378, 2582, 3018
RseI	CAYNNNNRTG	5 cut(s)	1043, 2057, 2357, 2652, 2709
SacI	GAGCTC	3 cut(s)	95, 654, 717
SapI	GCTCTTC	1 cut(s)	1740
Sau96I	GGNCC	6 cut(s)	54, 171, 183, 406, 1579, 2096
SbfI	CCTGCAGG	1 cut(s)	507
ScaI	AGTACT	1 cut(s)	2379
SchI	GAGTC	7 cut(s)	38, 149, 242, 352, 353, 686, 929
ScrFI	CCNGG	8 cut(s)	169, 178, 374, 548, 727, 1272, 1830, 2018
SdaI	CCTGCAGG	1 cut(s)	507
SduI	GDGCHC	6 cut(s)	95, 473, 654, 717, 1390, 1735
SexAI	ACCWGGT	1 cut(s)	546
SfcI	CTRYAG	6 cut(s)	503, 816, 1470, 1503, 1757, 1853
SfoI	GGCGCC	1 cut(s)	451
SinI	GGWCC	5 cut(s)	54, 171, 183, 406, 2096
SmiMI	CAYNNNNRTG	5 cut(s)	1043, 2057, 2357, 2652, 2709
SmlI	CTYRAG	3 cut(s)	332, 653, 1515
SmoI	CTYRAG	3 cut(s)	332, 653, 1515
Sse8387I	CCTGCAGG	1 cut(s)	507
SspDI	GGCGCC	1 cut(s)	449
SspMI	CTAG	8 cut(s)	51, 699, 1238, 1394, 1922, 2769, 3038, 3075
SstI	GAGCTC	3 cut(s)	95, 654, 717
StyD4I	CCNGG	8 cut(s)	167, 176, 372, 546, 725, 1270, 1828, 2016
StyI	CCWWGG	5 cut(s)	1531, 1591, 2511, 2793, 2937
TaaI	ACNGT	6 cut(s)	34, 1298, 1401, 1857, 2100, 2318
TaiI	ACGT	5 cut(s)	534, 1937, 2540, 2713, 2818
TatI	WGTACW	2 cut(s)	2349, 2377
TauI	GCSGC	5 cut(s)	9, 206, 372, 488, 1478
TfiI	GAWTC	7 cut(s)	706, 1256, 1466, 1892, 2000, 2132, 3011
TscAI	CASTG	1 cut(s)	2059
TseFI	GTSAC	6 cut(s)	34, 841, 1172, 1451, 1857, 1975
Tsp45I	GTSAC	6 cut(s)	34, 841, 1172, 1451, 1857, 1975
TspGWI	ACGGA	1 cut(s)	187
TspRI	CASTG	1 cut(s)	2059
VpaK11BI	GGWCC	5 cut(s)	54, 171, 183, 406, 2096
XagI	CCTNNNNNAGG	2 cut(s)	335, 551
XapI	RAATTY	8 cut(s)	215, 1636, 1961, 2412, 2420, 2565, 2892, 3044
XbaI	TCTAGA	1 cut(s)	1921
XceI	RCATGY	2 cut(s)	1689, 2442
XcmI	CCANNNNNNNNNTGG	1 cut(s)	670
XmiI	GTMKAC	2 cut(s)	889, 2174
XmnI	GAANNNNTTC	2 cut(s)	2131, 2394
XspI	CTAG	8 cut(s)	51, 699, 1238, 1394, 1922, 2769, 3038, 3075
ZrmI	AGTACT	1 cut(s)	2379
Zsp2I	ATGCAT	2 cut(s)	1462, 2981

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.