Vacuolar protein sorting-associated protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G19490 AT4G19490 |
| fragaria_vesca | FvH4_6g01010 FvH4_6g01010 FvH4_6g01010 |
| malus_domestica | MD04G1237800.v1.1 MD12G1256000.v1.1 |
| prunus_persica | Prupe.6G356900_v2.0.a1 Prupe.6G356900_v2.0.a1 Prupe.6G356900_v2.0.a1 Prupe.6G356900_v2.0.a1 |
| pyrus_communis | pycom04g21100 pycom12g23480 |
| rosa_chinensis | RchiOBHm_Chr3g0448451 |
| rosa_laevigata | RLG00000000687 RLG00000025905 |
| rosa_multiflora | Rmu_sc0003308.1_g000012 Rmu_sc0011979.1_g000005 |
| rosa_roxburghii | Rroxscaffold_6G00426680 |
| rosa_rugosa | Rorug02G0612500 Rorug02G0612600 Rorug02G0612600 Rorug07G0334800 |
| rosa_samantha | Rh3AG012000 Rh3BG011800 Rh3CG011500 Rh3DG012200 Rh7BG461900 |
| rosa_wichuraiana | Rw3G000930 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 878, 2429 |
| AarI | CACCTGC | 1 cut(s) | 3886 |
| Acc36I | ACCTGC | 3 cut(s) | 943, 3459, 3886 |
| AccB1I | GGYRCC | 2 cut(s) | 1073, 1472 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 476 |
| AccI | GTMKAC | 3 cut(s) | 538, 949, 4633 |
| AccII | CGCG | 2 cut(s) | 3117, 4859 |
| AccIII | TCCGGA | 1 cut(s) | 5212 |
| AcoI | YGGCCR | 3 cut(s) | 311, 1847, 5263 |
| AcuI | CTGAAG | 6 cut(s) | 1635, 2569, 3227, 3795, 4029, 5394 |
| AcyI | GRCGYC | 1 cut(s) | 3082 |
| AdeI | CACNNNGTG | 1 cut(s) | 479 |
| AfaI | GTAC | 7 cut(s) | 985, 2928, 3694, 4037, 4598, 5507, 5540 |
| AflIII | ACRYGT | 2 cut(s) | 3115, 3936 |
| AhlI | ACTAGT | 1 cut(s) | 1919 |
| AjnI | CCWGG | 3 cut(s) | 1069, 1467, 4054 |
| AleI | CACNNNNGTG | 2 cut(s) | 216, 5126 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 337, 369 |
| Alw21I | GWGCWC | 4 cut(s) | 428, 1295, 1698, 4709 |
| Alw26I | GTCTC | 5 cut(s) | 2714, 3415, 3799, 4122, 5224 |
| Alw44I | GTGCAC | 1 cut(s) | 4705 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 176, 2167, 4718 |
| Ama87I | CYCGRG | 4 cut(s) | 1010, 1294, 3522, 5236 |
| Aor13HI | TCCGGA | 1 cut(s) | 5212 |
| ApaLI | GTGCAC | 1 cut(s) | 4705 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2762, 2794 |
| AseI | ATTAAT | 5 cut(s) | 1833, 2406, 4293, 5045, 5049 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 418, 4018, 5314 |
| AspLEI | GCGC | 3 cut(s) | 1353, 2161, 3521 |
| AspS9I | GGNCC | 8 cut(s) | 119, 282, 395, 2315, 2553, 3471, 4517, 5278 |
| AsuC2I | CCSGG | 2 cut(s) | 709, 3444 |
| AsuNHI | GCTAGC | 1 cut(s) | 2344 |
| AvaI | CYCGRG | 4 cut(s) | 1010, 1294, 3522, 5236 |
| AvaII | GGWCC | 8 cut(s) | 119, 282, 395, 2315, 2553, 3471, 4517, 5278 |
| AxyI | CCTNAGG | 5 cut(s) | 2311, 3066, 4711, 5055, 5510 |
| BaeGI | GKGCMC | 3 cut(s) | 1078, 1475, 4709 |
| BalI | TGGCCA | 3 cut(s) | 313, 1849, 5265 |
| BamHI | GGATCC | 4 cut(s) | 1299, 2242, 2615, 2991 |
| BanI | GGYRCC | 2 cut(s) | 1073, 1472 |
| BanII | GRGCYC | 1 cut(s) | 5661 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 5352, 5384 |
| BbsI | GAAGAC | 1 cut(s) | 17 |
| Bbv12I | GWGCWC | 4 cut(s) | 428, 1295, 1698, 4709 |
| BbvCI | CCTCAGC | 1 cut(s) | 1242 |
| BceAI | ACGGC | 1 cut(s) | 3069 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 625, 659, 5461, 5495 |
| BciT130I | CCWGG | 3 cut(s) | 1071, 1469, 4056 |
| BciVI | GTATCC | 3 cut(s) | 3772, 3842, 5125 |
| BclI | TGATCA | 3 cut(s) | 499, 1261, 2692 |
| BcnI | CCSGG | 2 cut(s) | 709, 3444 |
| BcoDI | GTCTC | 5 cut(s) | 2714, 3415, 3799, 4122, 5224 |
| BcuI | ACTAGT | 1 cut(s) | 1919 |
| BfmI | CTRYAG | 9 cut(s) | 3312, 3579, 3966, 4245, 4719, 4758, 5034, 5136, 5547 |
| BfoI | RGCGCY | 2 cut(s) | 1354, 3522 |
| BfuAI | ACCTGC | 3 cut(s) | 943, 3459, 3886 |
| BfuI | GTATCC | 3 cut(s) | 3772, 3842, 5125 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1238 |
| BglII | AGATCT | 2 cut(s) | 1438, 4914 |
| BlpI | GCTNAGC | 2 cut(s) | 3864, 5097 |
| Bme1390I | CCNGG | 5 cut(s) | 709, 1071, 1469, 3444, 4056 |
| Bme18I | GGWCC | 8 cut(s) | 119, 282, 395, 2315, 2553, 3471, 4517, 5278 |
| BmeT110I | CYCGRG | 4 cut(s) | 1010, 1294, 3522, 5236 |
| BmgT120I | GGNCC | 8 cut(s) | 119, 282, 395, 2315, 2553, 3471, 4517, 5278 |
| BmrFI | CCNGG | 5 cut(s) | 709, 1071, 1469, 3444, 4056 |
| BmrI | ACTGGG | 4 cut(s) | 438, 1072, 4048, 5278 |
| BmtI | GCTAGC | 1 cut(s) | 2348 |
| BmuI | ACTGGG | 4 cut(s) | 438, 1072, 4048, 5278 |
| BpiI | GAAGAC | 1 cut(s) | 17 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 1288, 1320, 3905, 3937, 4904, 4936 |
| BpmI | CTGGAG | 5 cut(s) | 1773, 2010, 3609, 4523, 5504 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1242 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 3864, 5097 |
| BpuEI | CTTGAG | 7 cut(s) | 1421, 1922, 2620, 3314, 3932, 4703, 5321 |
| BpuMI | CCSGG | 2 cut(s) | 709, 3444 |
| BsaAI | YACGTR | 2 cut(s) | 1493, 2678 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2241, 2408 |
| BsaHI | GRCGYC | 1 cut(s) | 3082 |
| BsaI | GGTCTC | 3 cut(s) | 3415, 4122, 5224 |
| BsaWI | WCCGGW | 2 cut(s) | 1592, 5212 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 805, 835, 3884, 3914 |
| Bse21I | CCTNAGG | 5 cut(s) | 2311, 3066, 4711, 5055, 5510 |
| Bse3DI | GCAATG | 5 cut(s) | 1127, 1605, 1656, 2311, 4639 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2241, 2408 |
| BseAI | TCCGGA | 1 cut(s) | 5212 |
| BseBI | CCWGG | 3 cut(s) | 1071, 1469, 4056 |
| BseJI | GATNNNNATC | 2 cut(s) | 2241, 2408 |
| BseMI | GCAATG | 5 cut(s) | 1127, 1605, 1656, 2311, 4639 |
| BseRI | GAGGAG | 3 cut(s) | 1263, 2768, 2970 |
| BseSI | GKGCMC | 3 cut(s) | 1078, 1475, 4709 |
| BseYI | CCCAGC | 4 cut(s) | 1172, 2500, 2557, 5660 |
| BsgI | GTGCAG | 5 cut(s) | 254, 1293, 1710, 4118, 4430 |
| Bsh1236I | CGCG | 2 cut(s) | 3117, 4859 |
| BshNI | GGYRCC | 2 cut(s) | 1073, 1472 |
| BsiHKAI | GWGCWC | 4 cut(s) | 428, 1295, 1698, 4709 |
| BsiHKCI | CYCGRG | 4 cut(s) | 1010, 1294, 3522, 5236 |
| BsiSI | CCGG | 5 cut(s) | 708, 1593, 1653, 3444, 5213 |
| BslFI | GGGAC | 5 cut(s) | 2539, 2556, 3426, 4203, 5264 |
| BsmAI | GTCTC | 5 cut(s) | 2714, 3415, 3799, 4122, 5224 |
| BsmBI | CGTCTC | 1 cut(s) | 2714 |
| BsmFI | GGGAC | 5 cut(s) | 2539, 2556, 3426, 4203, 5264 |
| BsmI | GAATGC | 2 cut(s) | 1574, 3661 |
| Bso31I | GGTCTC | 3 cut(s) | 3415, 4122, 5224 |
| BsoBI | CYCGRG | 4 cut(s) | 1010, 1294, 3522, 5236 |
| Bsp1286I | GDGCHC | 7 cut(s) | 428, 1078, 1295, 1475, 1698, 4709, 5661 |
| Bsp13I | TCCGGA | 1 cut(s) | 5212 |
| Bsp1407I | TGTACA | 1 cut(s) | 4596 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 3864, 5097 |
| Bsp19I | CCATGG | 4 cut(s) | 115, 1357, 1887, 2562 |
| BspEI | TCCGGA | 1 cut(s) | 5212 |
| BspFNI | CGCG | 2 cut(s) | 3117, 4859 |
| BspHI | TCATGA | 3 cut(s) | 292, 511, 4321 |
| BspMAI | CTGCAG | 4 cut(s) | 4723, 5038, 5140, 5551 |
| BspMI | ACCTGC | 3 cut(s) | 943, 3459, 3886 |
| BspOI | GCTAGC | 1 cut(s) | 2348 |
| BspT107I | GGYRCC | 2 cut(s) | 1073, 1472 |
| BspTNI | GGTCTC | 3 cut(s) | 3415, 4122, 5224 |
| BsrDI | GCAATG | 5 cut(s) | 1127, 1605, 1656, 2311, 4639 |
| BsrGI | TGTACA | 1 cut(s) | 4596 |
| BssNAI | GTATAC | 2 cut(s) | 539, 950 |
| BssNI | GRCGYC | 1 cut(s) | 3082 |
| Bst1107I | GTATAC | 2 cut(s) | 539, 950 |
| Bst2UI | CCWGG | 3 cut(s) | 1071, 1469, 4056 |
| Bst6I | CTCTTC | 7 cut(s) | 115, 1180, 1185, 3153, 3336, 4791, 4905 |
| BstACI | GRCGYC | 1 cut(s) | 3082 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3298 |
| BstAUI | TGTACA | 1 cut(s) | 4596 |
| BstBAI | YACGTR | 2 cut(s) | 1493, 2678 |
| BstC8I | GCNNGC | 9 cut(s) | 471, 1432, 1857, 1970, 2025, 2346, 4213, 4569, 5140 |
| BstDSI | CCRYGG | 5 cut(s) | 115, 1357, 1887, 2562, 3085 |
| BstEII | GGTNACC | 1 cut(s) | 1895 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3983 |
| BstFNI | CGCG | 2 cut(s) | 3117, 4859 |
| BstH2I | RGCGCY | 2 cut(s) | 1354, 3522 |
| BstHHI | GCGC | 3 cut(s) | 1353, 2161, 3521 |
| BstMAI | GTCTC | 5 cut(s) | 2714, 3415, 3799, 4122, 5224 |
| BstNI | CCWGG | 3 cut(s) | 1071, 1469, 4056 |
| BstNSI | RCATGY | 3 cut(s) | 845, 3458, 3940 |
| BstPI | GGTNACC | 1 cut(s) | 1895 |
| BstSCI | CCNGG | 5 cut(s) | 707, 1069, 1467, 3442, 4054 |
| BstSFI | CTRYAG | 9 cut(s) | 3312, 3579, 3966, 4245, 4719, 4758, 5034, 5136, 5547 |
| BstSLI | GKGCMC | 3 cut(s) | 1078, 1475, 4709 |
| BstSNI | TACGTA | 1 cut(s) | 2678 |
| BstUI | CGCG | 2 cut(s) | 3117, 4859 |
| BstV2I | GAAGAC | 1 cut(s) | 17 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2253, 4501 |
| BstZ17I | GTATAC | 2 cut(s) | 539, 950 |
| Bsu36I | CCTNAGG | 5 cut(s) | 2311, 3066, 4711, 5055, 5510 |
| BsuI | GTATCC | 3 cut(s) | 3772, 3842, 5125 |
| BtgI | CCRYGG | 5 cut(s) | 115, 1357, 1887, 2562, 3085 |
| BtsI | GCAGTG | 1 cut(s) | 1682 |
| BveI | ACCTGC | 3 cut(s) | 943, 3459, 3886 |
| Cac8I | GCNNGC | 9 cut(s) | 471, 1432, 1857, 1970, 2025, 2346, 4213, 4569, 5140 |
| CaiI | CAGNNNCTG | 3 cut(s) | 176, 2167, 4718 |
| CciI | TCATGA | 3 cut(s) | 292, 511, 4321 |
| CfoI | GCGC | 3 cut(s) | 1353, 2161, 3521 |
| Cfr13I | GGNCC | 8 cut(s) | 119, 282, 395, 2315, 2553, 3471, 4517, 5278 |
| CseI | GACGC | 3 cut(s) | 3042, 3090, 5285 |
| Csp6I | GTAC | 7 cut(s) | 984, 2927, 3693, 4036, 4597, 5506, 5539 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2881, 2916 |
| CviQI | GTAC | 7 cut(s) | 984, 2927, 3693, 4036, 4597, 5506, 5539 |
| DraI | TTTAAA | 2 cut(s) | 1485, 2370 |
| DraIII | CACNNNGTG | 1 cut(s) | 479 |
| EaeI | YGGCCR | 3 cut(s) | 311, 1847, 5263 |
| Eam1104I | CTCTTC | 7 cut(s) | 115, 1180, 1185, 3153, 3336, 4791, 4905 |
| EarI | CTCTTC | 7 cut(s) | 115, 1180, 1185, 3153, 3336, 4791, 4905 |
| EciI | GGCGGA | 1 cut(s) | 2640 |
| Eco105I | TACGTA | 1 cut(s) | 2678 |
| Eco24I | GRGCYC | 1 cut(s) | 5661 |
| Eco31I | GGTCTC | 3 cut(s) | 3415, 4122, 5224 |
| Eco32I | GATATC | 3 cut(s) | 2860, 4546, 5210 |
| Eco47I | GGWCC | 8 cut(s) | 119, 282, 395, 2315, 2553, 3471, 4517, 5278 |
| Eco57I | CTGAAG | 6 cut(s) | 1635, 2569, 3227, 3795, 4029, 5394 |
| Eco81I | CCTNAGG | 5 cut(s) | 2311, 3066, 4711, 5055, 5510 |
| Eco88I | CYCGRG | 4 cut(s) | 1010, 1294, 3522, 5236 |
| Eco91I | GGTNACC | 1 cut(s) | 1895 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3983 |
| EcoO109I | RGGNCCY | 3 cut(s) | 282, 2315, 2553 |
| EcoO65I | GGTNACC | 1 cut(s) | 1895 |
| EcoRI | GAATTC | 3 cut(s) | 2518, 3176, 4144 |
| EcoRII | CCWGG | 3 cut(s) | 1069, 1467, 4054 |
| EcoRV | GATATC | 3 cut(s) | 2860, 4546, 5210 |
| EcoT22I | ATGCAT | 3 cut(s) | 200, 1576, 3663 |
| EcoT38I | GRGCYC | 1 cut(s) | 5661 |
| Esp3I | CGTCTC | 1 cut(s) | 2714 |
| FaqI | GGGAC | 5 cut(s) | 2539, 2556, 3426, 4203, 5264 |
| FauI | CCCGC | 2 cut(s) | 1764, 1990 |
| FauNDI | CATATG | 3 cut(s) | 1584, 3657, 4900 |
| FbaI | TGATCA | 3 cut(s) | 499, 1261, 2692 |
| FblI | GTMKAC | 3 cut(s) | 538, 949, 4633 |
| FriOI | GRGCYC | 1 cut(s) | 5661 |
| GlaI | GCGC | 3 cut(s) | 1352, 2160, 3520 |
| GsaI | CCCAGC | 4 cut(s) | 1176, 2504, 2561, 5664 |
| GsuI | CTGGAG | 5 cut(s) | 1773, 2010, 3609, 4523, 5504 |
| HaeII | RGCGCY | 2 cut(s) | 1354, 3522 |
| HapII | CCGG | 5 cut(s) | 708, 1593, 1653, 3444, 5213 |
| HgaI | GACGC | 3 cut(s) | 3042, 3090, 5285 |
| HhaI | GCGC | 3 cut(s) | 1353, 2161, 3521 |
| Hin1I | GRCGYC | 1 cut(s) | 3082 |
| Hin6I | GCGC | 3 cut(s) | 1351, 2159, 3519 |
| HinP1I | GCGC | 3 cut(s) | 1351, 2159, 3519 |
| HindIII | AAGCTT | 4 cut(s) | 1479, 2229, 2637, 5379 |
| HpaII | CCGG | 5 cut(s) | 708, 1593, 1653, 3444, 5213 |
| Hpy99I | CGWCG | 2 cut(s) | 2460, 3084 |
| HpyCH4IV | ACGT | 3 cut(s) | 1492, 2677, 2723 |
| HpySE526I | ACGT | 3 cut(s) | 1492, 2677, 2723 |
| Hsp92I | GRCGYC | 1 cut(s) | 3082 |
| HspAI | GCGC | 3 cut(s) | 1351, 2159, 3519 |
| KflI | GGGWCCC | 1 cut(s) | 2553 |
| Kpn2I | TCCGGA | 1 cut(s) | 5212 |
| Ksp22I | TGATCA | 3 cut(s) | 499, 1261, 2692 |
| LmnI | GCTCC | 7 cut(s) | 1060, 1071, 1538, 1595, 3849, 4925, 5656 |
| MaeII | ACGT | 3 cut(s) | 1492, 2677, 2723 |
| MaeIII | GTNAC | 9 cut(s) | 1319, 1633, 1895, 3109, 3129, 3873, 3939, 4480, 4930 |
| MfeI | CAATTG | 3 cut(s) | 641, 5250, 5475 |
| MhlI | GDGCHC | 7 cut(s) | 428, 1078, 1295, 1475, 1698, 4709, 5661 |
| MlsI | TGGCCA | 3 cut(s) | 313, 1849, 5265 |
| MluI | ACGCGT | 1 cut(s) | 3115 |
| MluNI | TGGCCA | 3 cut(s) | 313, 1849, 5265 |
| MlyI | GAGTC | 9 cut(s) | 986, 1913, 2538, 2895, 3137, 3498, 3887, 4358, 5328 |
| MmeI | TCCRAC | 6 cut(s) | 894, 1120, 2778, 3498, 4512, 5287 |
| Mox20I | TGGCCA | 3 cut(s) | 313, 1849, 5265 |
| Mph1103I | ATGCAT | 3 cut(s) | 200, 1576, 3663 |
| MroI | TCCGGA | 1 cut(s) | 5212 |
| MroXI | GAANNNNTTC | 3 cut(s) | 418, 4018, 5314 |
| MscI | TGGCCA | 3 cut(s) | 313, 1849, 5265 |
| MslI | CAYNNNNRTG | 8 cut(s) | 216, 1583, 2251, 3186, 3453, 4094, 4695, 5126 |
| Msp20I | TGGCCA | 3 cut(s) | 313, 1849, 5265 |
| MspA1I | CMGCKG | 5 cut(s) | 1613, 2612, 3239, 5165, 5546 |
| MspI | CCGG | 5 cut(s) | 708, 1593, 1653, 3444, 5213 |
| MspR9I | CCNGG | 5 cut(s) | 709, 1071, 1469, 3444, 4056 |
| MunI | CAATTG | 3 cut(s) | 641, 5250, 5475 |
| Mva1269I | GAATGC | 2 cut(s) | 1574, 3661 |
| MvaI | CCWGG | 3 cut(s) | 1071, 1469, 4056 |
| MvnI | CGCG | 2 cut(s) | 3117, 4859 |
| NciI | CCSGG | 2 cut(s) | 709, 3444 |
| NcoI | CCATGG | 4 cut(s) | 115, 1357, 1887, 2562 |
| NdeI | CATATG | 3 cut(s) | 1584, 3657, 4900 |
| NheI | GCTAGC | 1 cut(s) | 2344 |
| NmeAIII | GCCGAG | 2 cut(s) | 2551, 4430 |
| NmuCI | GTSAC | 5 cut(s) | 1319, 3129, 3873, 3939, 4930 |
| NsiI | ATGCAT | 3 cut(s) | 200, 1576, 3663 |
| NspI | RCATGY | 3 cut(s) | 845, 3458, 3940 |
| OliI | CACNNNNGTG | 2 cut(s) | 216, 5126 |
| PacI | TTAATTAA | 1 cut(s) | 5049 |
| PaeR7I | CTCGAG | 2 cut(s) | 1010, 1294 |
| PagI | TCATGA | 3 cut(s) | 292, 511, 4321 |
| PaqCI | CACCTGC | 1 cut(s) | 3886 |
| PciI | ACATGT | 1 cut(s) | 3936 |
| PctI | GAATGC | 2 cut(s) | 1574, 3661 |
| PdmI | GAANNNNTTC | 3 cut(s) | 418, 4018, 5314 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 476 |
| PleI | GAGTC | 9 cut(s) | 985, 1912, 2538, 2894, 3136, 3497, 3887, 4357, 5328 |
| PpsI | GAGTC | 9 cut(s) | 985, 1912, 2538, 2894, 3136, 3497, 3887, 4357, 5328 |
| Ppu21I | YACGTR | 2 cut(s) | 1493, 2678 |
| PpuMI | RGGWCCY | 3 cut(s) | 282, 2315, 2553 |
| PscI | ACATGT | 1 cut(s) | 3936 |
| PshBI | ATTAAT | 5 cut(s) | 1833, 2406, 4293, 5045, 5049 |
| PsiI | TTATAA | 2 cut(s) | 878, 2429 |
| Psp5II | RGGWCCY | 3 cut(s) | 282, 2315, 2553 |
| Psp6I | CCWGG | 3 cut(s) | 1069, 1467, 4054 |
| PspEI | GGTNACC | 1 cut(s) | 1895 |
| PspFI | CCCAGC | 4 cut(s) | 1172, 2500, 2557, 5660 |
| PspGI | CCWGG | 3 cut(s) | 1069, 1467, 4054 |
| PspPI | GGNCC | 8 cut(s) | 119, 282, 395, 2315, 2553, 3471, 4517, 5278 |
| PspPPI | RGGWCCY | 3 cut(s) | 282, 2315, 2553 |
| PspXI | VCTCGAGB | 2 cut(s) | 1010, 1294 |
| PstI | CTGCAG | 4 cut(s) | 4723, 5038, 5140, 5551 |
| PstNI | CAGNNNCTG | 3 cut(s) | 176, 2167, 4718 |
| PvuII | CAGCTG | 5 cut(s) | 1613, 2612, 3239, 5165, 5546 |
| RsaI | GTAC | 7 cut(s) | 985, 2928, 3694, 4037, 4598, 5507, 5540 |
| RsaNI | GTAC | 7 cut(s) | 984, 2927, 3693, 4036, 4597, 5506, 5539 |
| RseI | CAYNNNNRTG | 8 cut(s) | 216, 1583, 2251, 3186, 3453, 4094, 4695, 5126 |
| Sau96I | GGNCC | 8 cut(s) | 119, 282, 395, 2315, 2553, 3471, 4517, 5278 |
| SchI | GAGTC | 9 cut(s) | 986, 1913, 2538, 2895, 3137, 3498, 3887, 4358, 5328 |
| ScrFI | CCNGG | 5 cut(s) | 709, 1071, 1469, 3444, 4056 |
| SduI | GDGCHC | 7 cut(s) | 428, 1078, 1295, 1475, 1698, 4709, 5661 |
| SfcI | CTRYAG | 9 cut(s) | 3312, 3579, 3966, 4245, 4719, 4758, 5034, 5136, 5547 |
| Sfr274I | CTCGAG | 2 cut(s) | 1010, 1294 |
| SinI | GGWCC | 8 cut(s) | 119, 282, 395, 2315, 2553, 3471, 4517, 5278 |
| SlaI | CTCGAG | 2 cut(s) | 1010, 1294 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 216, 1583, 2251, 3186, 3453, 4094, 4695, 5126 |
| SmlI | CTYRAG | 9 cut(s) | 1010, 1294, 1400, 1901, 2599, 3329, 3911, 4682, 5336 |
| SmoI | CTYRAG | 9 cut(s) | 1010, 1294, 1400, 1901, 2599, 3329, 3911, 4682, 5336 |
| SnaBI | TACGTA | 1 cut(s) | 2678 |
| SpeI | ACTAGT | 1 cut(s) | 1919 |
| SspI | AATATT | 1 cut(s) | 4356 |
| StyD4I | CCNGG | 5 cut(s) | 707, 1069, 1467, 3442, 4054 |
| TaiI | ACGT | 3 cut(s) | 1495, 2680, 2726 |
| TaqI | TCGA | 9 cut(s) | 83, 452, 1011, 1038, 1295, 1817, 2709, 3282, 5598 |
| TaqII | GACCGA | 2 cut(s) | 3535, 5516 |
| TatI | WGTACW | 3 cut(s) | 3692, 4035, 4596 |
| TauI | GCSGC | 2 cut(s) | 2465, 2471 |
| TseFI | GTSAC | 5 cut(s) | 1319, 3129, 3873, 3939, 4930 |
| Tsp45I | GTSAC | 5 cut(s) | 1319, 3129, 3873, 3939, 4930 |
| TspGWI | ACGGA | 9 cut(s) | 537, 652, 826, 1876, 2413, 2444, 2633, 3797, 4138 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 476 |
| VneI | GTGCAC | 1 cut(s) | 4705 |
| VpaK11BI | GGWCC | 8 cut(s) | 119, 282, 395, 2315, 2553, 3471, 4517, 5278 |
| VspI | ATTAAT | 5 cut(s) | 1833, 2406, 4293, 5045, 5049 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3983 |
| XbaI | TCTAGA | 2 cut(s) | 3335, 5327 |
| XceI | RCATGY | 3 cut(s) | 845, 3458, 3940 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3003 |
| XhoI | CTCGAG | 2 cut(s) | 1010, 1294 |
| XmiI | GTMKAC | 3 cut(s) | 538, 949, 4633 |
| XmnI | GAANNNNTTC | 3 cut(s) | 418, 4018, 5314 |
| Zsp2I | ATGCAT | 3 cut(s) | 200, 1576, 3663 |