Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005460

Physical Location & Seq

Genomic Coordinates Forward (+)

72945241 .. 72949072

Gene Structure 3832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0612500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGTCAGCTCTTAGAGATCTCAATACCATACCGGGATCTGAGAGGAAGAATGAAAGCTCTAGCAAAGGGGTTCTAACTAAACCCTTTGCTGGGATTGCTACTGAAAATCATGAAGAGTGCCAGAAGAAAAACTCTGTCTCTTTGGGTGCCCCTTCTACTAATGGTGCCCCTTCTACTAATGGTGAGGAAGTTGTGAATGCCGTTGAGGTTGCAAATACAGAAGTAGAATACATTGAGTCTGAGAATTTGAATGATGTAGAAGATGTTGATTTGAGTCTCAAGACACTCTTAACTGGACTAGACTCTAAAGATTGGGTGCTGCTTTGTGAAGCACTCAATACTGTCCGTCGGTTATCCATTTTTCACAAGGAAGCTATGCTCGATACACTGGGAGATGTGATTCCACTTGTAGTAAGGTCCCTGAAGAATCCAAGAAGTGCTGTTTGCAAAACTGCAATTATGACATCTGCAGATATCTTCAACGCTTACAATGACAGTATAGTTGATTCATTGGACCCTCTGCTACTACAACTTCTTCTCAAGTCTTCACAAGACAAACGATTTGTATGCGAGGCAGCTGAAAGAGCTTTAGTAGCAATGACTACATGGGTTTCCCCCACATTGTTGTTACCAATGCTGCAACCATATCTCAAGCACAAAAATCCTAGAATTCGAGCGAAGGCATCAATGTGCTTTTGTCGAAGTGTTCCACGACTGGGTGTTGAAGGTACTAAAGCATATGGGATTGACAAATTAATTCAAGTTGCCGCCTCCCAGCTTAGTGACCAGCTTCCTGAATCAAGGGAGGCTGCTCGAAGCCTCCTCCTTGAGTTGCAGACTGTTTATGAGAAATTTCAGAATCTCTCTCCAACAGCAGTATCTGAGGAGATGCAACCAGAGGTGGACTCTTGGGAGAACTTCTGCCAATCGAAACTCTCTCCGCTTAGCGCACAAGCTGTTCTTCGGGTGACCAATATCTCTCGGGAAGGTCTTGTTGTTGGCTCCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0000938 GO:0001894 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0006892 GO:0006896 GO:0006996 GO:0007010 GO:0007034 GO:0007041 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0019905 GO:0031090 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032501 GO:0032588 GO:0032991 GO:0040008 GO:0042147 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045103 GO:0045104 GO:0046907 GO:0048193 GO:0048471 GO:0048871 GO:0048872 GO:0048873 GO:0050789 GO:0050879 GO:0050881 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060052 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps54

Protein Analysis

336

Amino Acids

36.81

Weight (kDa)

5.17

Isoelectric Point (pI)

41.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLASP_N	PF12348	126 - 282	5.7e-06	CLASP N terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19490 AT4G19490
fragaria_vesca	FvH4_6g01010 FvH4_6g01010 FvH4_6g01010
malus_domestica	MD04G1237800.v1.1 MD12G1256000.v1.1
prunus_persica	Prupe.6G356900_v2.0.a1 Prupe.6G356900_v2.0.a1 Prupe.6G356900_v2.0.a1 Prupe.6G356900_v2.0.a1
pyrus_communis	pycom04g21100 pycom12g23480
rosa_chinensis	RchiOBHm_Chr3g0448451
rosa_laevigata	RLG00000000687 RLG00000025905
rosa_multiflora	Rmu_sc0003308.1_g000012 Rmu_sc0011979.1_g000005
rosa_roxburghii	Rroxscaffold_6G00426680
rosa_rugosa	Rorug02G0612500 Rorug02G0612600 Rorug02G0612600 Rorug07G0334800
rosa_samantha	Rh3AG012000 Rh3BG011800 Rh3CG011500 Rh3DG012200 Rh7BG461900
rosa_wichuraiana	Rw3G000930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	146, 164
AciI	CCGC	2 cut(s)	768, 941
AclWI	GGATC	1 cut(s)	43
AcsI	RAATTY	3 cut(s)	244, 669, 851
AcuI	CTGAAG	1 cut(s)	443
AfaI	GTAC	1 cut(s)	730
AfiI	CCNNNNNNNGG	3 cut(s)	89, 90, 716
AgsI	TTSAA	4 cut(s)	250, 481, 725, 761
AluBI	AGCT	8 cut(s)	8, 57, 374, 578, 587, 778, 790, 956
AluI	AGCT	8 cut(s)	8, 57, 374, 578, 587, 778, 790, 956
Alw26I	GTCTC	2 cut(s)	142, 281
AlwI	GGATC	1 cut(s)	43
AlwNI	CAGNNNCTG	1 cut(s)	881
Ama87I	CYCGRG	1 cut(s)	981
ApeKI	GCWGC	4 cut(s)	319, 575, 637, 809
ApoI	RAATTY	3 cut(s)	244, 669, 851
ArsI	GACNNNNNNTTYG	2 cut(s)	545, 577
AseI	ATTAAT	1 cut(s)	755
AspLEI	GCGC	1 cut(s)	950
AspS9I	GGNCC	2 cut(s)	417, 514
AsuC2I	CCSGG	1 cut(s)	33
AsuHPI	GGTGA	2 cut(s)	194, 979
AvaI	CYCGRG	1 cut(s)	981
AvaII	GGWCC	2 cut(s)	417, 514
BaeGI	GKGCMC	2 cut(s)	151, 169
BaeI	ACNNNNGTAYC	2 cut(s)	861, 894
BanI	GGYRCC	2 cut(s)	146, 164
BbsI	GAAGAC	1 cut(s)	537
BbvI	GCAGC	4 cut(s)	306, 587, 624, 796
BceAI	ACGGC	1 cut(s)	185
BcgI	CGANNNNNNTGC	2 cut(s)	549, 583
BcnI	CCSGG	1 cut(s)	33
BcoDI	GTCTC	2 cut(s)	142, 281
BfaI	CTAG	3 cut(s)	60, 299, 666
BfmI	CTRYAG	1 cut(s)	468
BglII	AGATCT	1 cut(s)	16
BisI	GCNGC	5 cut(s)	320, 576, 638, 768, 810
BlpI	GCTNAGC	1 cut(s)	944
BlsI	GCNGC	5 cut(s)	321, 577, 639, 769, 811
Bme1390I	CCNGG	1 cut(s)	33
Bme18I	GGWCC	2 cut(s)	417, 514
BmeT110I	CYCGRG	1 cut(s)	981
BmgT120I	GGNCC	2 cut(s)	417, 514
BmiI	GGNNCC	5 cut(s)	148, 166, 419, 516, 1003
BmrFI	CCNGG	1 cut(s)	33
BmrI	ACTGGG	2 cut(s)	398, 725
BmsI	GCATC	2 cut(s)	692, 879
BmuI	ACTGGG	2 cut(s)	398, 725
BpiI	GAAGAC	1 cut(s)	537
BplI	GAGNNNNNCTC	2 cut(s)	890, 922
Bpu1102I	GCTNAGC	1 cut(s)	944
BpuEI	CTTGAG	4 cut(s)	263, 524, 635, 848
BpuMI	CCSGG	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 90, 716
Bse1I	ACTGG	3 cut(s)	298, 393, 720
Bse3DI	GCAATG	1 cut(s)	603
BseLI	CCNNNNNNNGG	3 cut(s)	89, 90, 716
BseMI	GCAATG	1 cut(s)	603
BseMII	CTCAG	3 cut(s)	30, 231, 873
BseNI	ACTGG	3 cut(s)	298, 393, 720
BseRI	GAGGAG	3 cut(s)	812, 899, 994
BseSI	GKGCMC	2 cut(s)	151, 169
BseXI	GCAGC	4 cut(s)	306, 587, 624, 796
BseYI	CCCAGC	2 cut(s)	89, 774
BshNI	GGYRCC	2 cut(s)	146, 164
BsiHKCI	CYCGRG	1 cut(s)	981
BsiSI	CCGG	1 cut(s)	32
BslFI	GGGAC	1 cut(s)	403
BslI	CCNNNNNNNGG	3 cut(s)	89, 90, 716
BsmAI	GTCTC	2 cut(s)	142, 281
BsmFI	GGGAC	1 cut(s)	403
BsmI	GAATGC	1 cut(s)	202
BsoBI	CYCGRG	1 cut(s)	981
Bsp1286I	GDGCHC	2 cut(s)	151, 169
Bsp143I	GATC	2 cut(s)	16, 35
Bsp1720I	GCTNAGC	1 cut(s)	944
BspACI	CCGC	2 cut(s)	768, 941
BspCNI	CTCAG	3 cut(s)	31, 232, 874
BspHI	TCATGA	1 cut(s)	109
BspLI	GGNNCC	5 cut(s)	148, 166, 419, 516, 1003
BspMAI	CTGCAG	1 cut(s)	472
BspPI	GGATC	1 cut(s)	43
BspT107I	GGYRCC	2 cut(s)	146, 164
BsrDI	GCAATG	1 cut(s)	603
BsrI	ACTGG	3 cut(s)	298, 393, 720
BssMI	GATC	2 cut(s)	16, 35
Bst4CI	ACNGT	3 cut(s)	343, 497, 841
Bst6I	CTCTTC	1 cut(s)	108
BstDEI	CTNAG	6 cut(s)	11, 39, 240, 779, 882, 944
BstEII	GGTNACC	1 cut(s)	967
BstHHI	GCGC	1 cut(s)	950
BstKTI	GATC	2 cut(s)	19, 38
BstMAI	GTCTC	2 cut(s)	142, 281
BstMBI	GATC	2 cut(s)	16, 35
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 584, 593
BstPI	GGTNACC	1 cut(s)	967
BstSCI	CCNGG	1 cut(s)	31
BstSFI	CTRYAG	1 cut(s)	468
BstSLI	GKGCMC	2 cut(s)	151, 169
BstV1I	GCAGC	4 cut(s)	306, 587, 624, 796
BstV2I	GAAGAC	1 cut(s)	537
BstX2I	RGATCY	2 cut(s)	16, 35
BstYI	RGATCY	2 cut(s)	16, 35
BtsIMutI	CAGTG	1 cut(s)	386
CaiI	CAGNNNCTG	1 cut(s)	881
CciI	TCATGA	1 cut(s)	109
CfoI	GCGC	1 cut(s)	950
Cfr13I	GGNCC	2 cut(s)	417, 514
Csp6I	GTAC	1 cut(s)	729
CviAII	CATG	2 cut(s)	110, 606
CviQI	GTAC	1 cut(s)	729
DdeI	CTNAG	6 cut(s)	11, 39, 240, 779, 882, 944
DpnI	GATC	2 cut(s)	18, 37
DpnII	GATC	2 cut(s)	16, 35
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco32I	GATATC	1 cut(s)	475
Eco47I	GGWCC	2 cut(s)	417, 514
Eco57I	CTGAAG	1 cut(s)	443
Eco88I	CYCGRG	1 cut(s)	981
Eco91I	GGTNACC	1 cut(s)	967
EcoO109I	RGGNCCY	1 cut(s)	417
EcoO65I	GGTNACC	1 cut(s)	967
EcoRI	GAATTC	1 cut(s)	669
EcoRV	GATATC	1 cut(s)	475
FaeI	CATG	2 cut(s)	113, 609
FalI	AAGNNNNNCTT	4 cut(s)	272, 304, 945, 977
FaqI	GGGAC	1 cut(s)	403
FatI	CATG	2 cut(s)	109, 605
FauNDI	CATATG	1 cut(s)	739
Fnu4HI	GCNGC	5 cut(s)	320, 576, 638, 768, 810
Fsp4HI	GCNGC	5 cut(s)	320, 576, 638, 768, 810
FspBI	CTAG	3 cut(s)	60, 299, 666
GlaI	GCGC	1 cut(s)	949
GluI	GCNGC	5 cut(s)	320, 576, 638, 768, 810
GsaI	CCCAGC	2 cut(s)	93, 778
HapII	CCGG	1 cut(s)	32
HhaI	GCGC	1 cut(s)	950
Hin1II	CATG	2 cut(s)	113, 609
Hin6I	GCGC	1 cut(s)	948
HinP1I	GCGC	1 cut(s)	948
HinfI	GANTC	9 cut(s)	236, 274, 302, 400, 427, 506, 797, 859, 905
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	2 cut(s)	194, 979
Hpy166II	GTNNAC	1 cut(s)	904
Hpy188I	TCNGA	4 cut(s)	40, 241, 858, 883
Hpy188III	TCNNGA	5 cut(s)	110, 280, 794, 983, 1008
Hpy8I	GTNNAC	1 cut(s)	904
Hpy99I	CGWCG	1 cut(s)	351
HpyAV	CCTTC	5 cut(s)	162, 180, 673, 719, 980
HpyCH4III	ACNGT	3 cut(s)	343, 497, 841
HpyCH4V	TGCA	7 cut(s)	212, 447, 455, 470, 640, 835, 892
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 584, 593
HpyF3I	CTNAG	6 cut(s)	11, 39, 240, 779, 882, 944
Hsp92II	CATG	2 cut(s)	113, 609
HspAI	GCGC	1 cut(s)	948
Kzo9I	GATC	2 cut(s)	16, 35
LmnI	GCTCC	1 cut(s)	1007
Lsp1109I	GCAGC	4 cut(s)	306, 587, 624, 796
LweI	GCATC	2 cut(s)	692, 879
MaeI	CTAG	3 cut(s)	60, 299, 666
MaeIII	GTNAC	3 cut(s)	627, 782, 967
MalI	GATC	2 cut(s)	18, 37
MboI	GATC	2 cut(s)	16, 35
MboII	GAAGA	9 cut(s)	58, 125, 136, 272, 436, 469, 527, 537, 953
MflI	RGATCY	2 cut(s)	16, 35
MhlI	GDGCHC	2 cut(s)	151, 169
MluCI	AATT	6 cut(s)	244, 456, 669, 752, 756, 851
MlyI	GAGTC	4 cut(s)	245, 283, 296, 899
MmeI	TCCRAC	1 cut(s)	893
MseI	TTAA	2 cut(s)	290, 755
MslI	CAYNNNNRTG	1 cut(s)	688
MspA1I	CMGCKG	1 cut(s)	578
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	33
Mva1269I	GAATGC	1 cut(s)	202
MwoI	GCNNNNNNNGC	3 cut(s)	95, 584, 593
NciI	CCSGG	1 cut(s)	33
NdeI	CATATG	1 cut(s)	739
NdeII	GATC	2 cut(s)	16, 35
NlaIII	CATG	2 cut(s)	113, 609
NlaIV	GGNNCC	5 cut(s)	148, 166, 419, 516, 1003
NmuCI	GTSAC	2 cut(s)	782, 967
PagI	TCATGA	1 cut(s)	109
PctI	GAATGC	1 cut(s)	202
PfeI	GAWTC	5 cut(s)	400, 427, 506, 797, 859
PkrI	GCNGC	5 cut(s)	321, 577, 639, 769, 811
PleI	GAGTC	4 cut(s)	244, 282, 296, 899
PpsI	GAGTC	4 cut(s)	244, 282, 296, 899
PpuMI	RGGWCCY	1 cut(s)	417
PshBI	ATTAAT	1 cut(s)	755
Psp5II	RGGWCCY	1 cut(s)	417
PspEI	GGTNACC	1 cut(s)	967
PspFI	CCCAGC	2 cut(s)	89, 774
PspN4I	GGNNCC	5 cut(s)	148, 166, 419, 516, 1003
PspPI	GGNCC	2 cut(s)	417, 514
PspPPI	RGGWCCY	1 cut(s)	417
PstI	CTGCAG	1 cut(s)	472
PstNI	CAGNNNCTG	1 cut(s)	881
PsuI	RGATCY	2 cut(s)	16, 35
PvuII	CAGCTG	1 cut(s)	578
RsaI	GTAC	1 cut(s)	730
RsaNI	GTAC	1 cut(s)	729
RseI	CAYNNNNRTG	1 cut(s)	688
SaqAI	TTAA	2 cut(s)	290, 755
SatI	GCNGC	5 cut(s)	320, 576, 638, 768, 810
Sau3AI	GATC	2 cut(s)	16, 35
Sau96I	GGNCC	2 cut(s)	417, 514
SchI	GAGTC	4 cut(s)	245, 283, 296, 899
ScrFI	CCNGG	1 cut(s)	33
SduI	GDGCHC	2 cut(s)	151, 169
SfaNI	GCATC	2 cut(s)	692, 879
SfcI	CTRYAG	1 cut(s)	468
SinI	GGWCC	2 cut(s)	417, 514
SmiMI	CAYNNNNRTG	1 cut(s)	688
SmlI	CTYRAG	4 cut(s)	278, 539, 650, 827
SmoI	CTYRAG	4 cut(s)	278, 539, 650, 827
Sse9I	AATT	6 cut(s)	244, 456, 669, 752, 756, 851
SsiI	CCGC	2 cut(s)	768, 941
SspMI	CTAG	3 cut(s)	60, 299, 666
StyD4I	CCNGG	1 cut(s)	31
TaaI	ACNGT	3 cut(s)	343, 497, 841
TaqI	TCGA	5 cut(s)	381, 673, 700, 814, 929
TasI	AATT	6 cut(s)	244, 456, 669, 752, 756, 851
TauI	GCSGC	1 cut(s)	770
TfiI	GAWTC	5 cut(s)	400, 427, 506, 797, 859
Tru1I	TTAA	2 cut(s)	290, 755
Tru9I	TTAA	2 cut(s)	290, 755
TscAI	CASTG	1 cut(s)	393
TseFI	GTSAC	2 cut(s)	782, 967
TseI	GCWGC	4 cut(s)	319, 575, 637, 809
Tsp45I	GTSAC	2 cut(s)	782, 967
TspDTI	ATGAA	3 cut(s)	66, 126, 498
TspGWI	ACGGA	1 cut(s)	335
TspRI	CASTG	1 cut(s)	393
VpaK11BI	GGWCC	2 cut(s)	417, 514
VspI	ATTAAT	1 cut(s)	755
XapI	RAATTY	3 cut(s)	244, 669, 851
XspI	CTAG	3 cut(s)	60, 299, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.