Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0007380

Physical Location & Seq

Genomic Coordinates Forward (+)

2437348 .. 2443988

Gene Structure 6641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00220250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGAAAGACCTGCATGGAATCCCCTTAGCTTTATTAAAACAGGCCAAGACGTTGATGGAAGGAATAAAGCTGAGGATGCAAGTGATGAAACAGCACAAGCTATAGCCATGAAAGGGAGAATAATATTGTACACAAGGTTAGGATGCCAGGATTGCAAAGATGCCAGGTTATTTTTGTATTGGAAGAAGCTCAGATATACTGAGATCAATATTGATGTGTACCCTAGTAGAAAGCAGGAGTTAGAGAAATTTTCTGGGTCTTCTACTGTTCCAAAGGTTTTCTTCAATGAAGTCCTTATTGGAGGCTTGAATGAACTAAAGGGCTTGGATGAGTCTGGCAAGCTTGATGACAAGATTGATTATCTGGTTAGTGAAGCACCATCATTTGAAGCTCCTTTGCCACCACTTTCAGGTGAAGATGATGTGTCCAATAGTGGAGCTATTGATGAACTGGCTTTAATTGTCCGGAAAATGAAAGAATTTGTTGTTGTGAAGGATCGGTTTTACAAAATGCGCAGGTACACAAAGAGTTTTTCAGGTTCAGAAGCAGTGGATTTCTTATCAGAGGATCAGTATCTAGAAAGGGAAGAGGCTATCGAATTTGGAAGGAAGCTTGCAAGCAAACTCTTCTTTCAACATGTTCTTGAGGAAAATTTGTTTGAGGATGGGAACCACCTGTATCGGTTCTTGGATGATGATCCAATTGTATCTCAATGTCACAACATCCCAAAGGGTATAATTGATGTGAAGCCAAAGCCCATCATGGAAATCGAATTAAGGTTGAGATTTATAATGTGTGCCATCTTGGAAGCCTATGTTTCAGAAGATGGAAAACATATTGATTACAGAAGTATCCACGGAAGTGAGGAATTTGCAAGGTCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEP DUF547 Glutaredoxin

Protein Analysis

295

Amino Acids

33.86

Weight (kDa)

5.08

Isoelectric Point (pI)

44.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	41 - 100	1e-13	Glutaredoxin
DEP	PF00610	163 - 229	4.6e-17	Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08550 AT4G08550
fragaria_vesca	FvH4_5g38290 FvH4_5g38290 FvH4_5g38290 FvH4_5g38290 FvH4_5g38290 FvH4_5g38290
malus_domestica	MD08G1174700.v1.1 MD15G1361400.v1.1
prunus_persica	Prupe.1G508800_v2.0.a1 Prupe.1G508800_v2.0.a1
pyrus_communis	pycom08g14970 pycom15g32290
rosa_chinensis	RchiOBHm_Chr7g0240291
rosa_laevigata	RLG00000000688
rosa_multiflora	Rmu_sc0002676.1_g000015
rosa_roxburghii	Rroxscaffold_3G00220250
rosa_rugosa	Rorug07G0334700 Rorug07G0334800
rosa_samantha	Rh7AG488900 Rh7BG461800 Rh7CG505000 Rh7DG473000
rosa_wichuraiana	Rw7G040910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	791
Acc16I	TGCGCA	1 cut(s)	515
Acc36I	ACCTGC	2 cut(s)	19, 507
AccIII	TCCGGA	1 cut(s)	465
AclWI	GGATC	3 cut(s)	504, 576, 692
AcsI	RAATTY	5 cut(s)	248, 479, 599, 652, 869
AfaI	GTAC	3 cut(s)	131, 221, 521
AfiI	CCNNNNNNNGG	2 cut(s)	114, 410
AflIII	ACRYGT	1 cut(s)	637
AgsI	TTSAA	4 cut(s)	286, 310, 389, 635
AjnI	CCWGG	2 cut(s)	147, 164
AjuI	GAANNNNNNNTTGG	2 cut(s)	282, 314
AleI	CACNNNNGTG	1 cut(s)	861
AluBI	AGCT	8 cut(s)	30, 71, 101, 190, 343, 392, 440, 613
AluI	AGCT	8 cut(s)	30, 71, 101, 190, 343, 392, 440, 613
AlwI	GGATC	3 cut(s)	504, 576, 692
Aor13HI	TCCGGA	1 cut(s)	465
AoxI	GGCC	1 cut(s)	43
ApoI	RAATTY	5 cut(s)	248, 479, 599, 652, 869
AspLEI	GCGC	1 cut(s)	516
AsuHPI	GGTGA	1 cut(s)	425
BaeI	ACNNNNGTAYC	2 cut(s)	835, 868
BbsI	GAAGAC	1 cut(s)	252
BbvCI	CCTCAGC	1 cut(s)	72
BccI	CCATC	6 cut(s)	50, 388, 659, 767, 809, 821
BciT130I	CCWGG	2 cut(s)	149, 166
BciVI	GTATCC	1 cut(s)	863
BfaI	CTAG	2 cut(s)	225, 578
BfmI	CTRYAG	1 cut(s)	102
BfuAI	ACCTGC	2 cut(s)	19, 507
BfuI	GTATCC	1 cut(s)	863
Bme1390I	CCNGG	2 cut(s)	149, 166
BmiI	GGNNCC	1 cut(s)	671
BmrFI	CCNGG	2 cut(s)	149, 166
BmsI	GCATC	3 cut(s)	67, 134, 151
BpiI	GAAGAC	1 cut(s)	252
Bpu10I	CCTNAGC	2 cut(s)	26, 72
BpuEI	CTTGAG	1 cut(s)	665
BsaBI	GATNNNNATC	2 cut(s)	573, 696
BsaJI	CCNNGG	1 cut(s)	856
BsaWI	WCCGGW	1 cut(s)	465
Bsc4I	CCNNNNNNNGG	2 cut(s)	114, 410
Bse1I	ACTGG	1 cut(s)	456
Bse8I	GATNNNNATC	2 cut(s)	573, 696
BseAI	TCCGGA	1 cut(s)	465
BseBI	CCWGG	2 cut(s)	149, 166
BseDI	CCNNGG	1 cut(s)	856
BseGI	GGATG	6 cut(s)	82, 149, 334, 670, 697, 723
BseJI	GATNNNNATC	2 cut(s)	573, 696
BseLI	CCNNNNNNNGG	2 cut(s)	114, 410
BseMII	CTCAG	3 cut(s)	63, 192, 205
BseNI	ACTGG	1 cut(s)	456
BshFI	GGCC	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	466
BslI	CCNNNNNNNGG	2 cut(s)	114, 410
BsnI	GGCC	1 cut(s)	45
Bsp13I	TCCGGA	1 cut(s)	465
Bsp1407I	TGTACA	1 cut(s)	129
Bsp143I	GATC	4 cut(s)	204, 496, 568, 697
BspANI	GGCC	1 cut(s)	45
BspCNI	CTCAG	3 cut(s)	64, 193, 204
BspEI	TCCGGA	1 cut(s)	465
BspLI	GGNNCC	1 cut(s)	671
BspMI	ACCTGC	2 cut(s)	19, 507
BspPI	GGATC	3 cut(s)	504, 576, 692
BsrGI	TGTACA	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	456
BssECI	CCNNGG	1 cut(s)	856
BssMI	GATC	4 cut(s)	204, 496, 568, 697
Bst2UI	CCWGG	2 cut(s)	149, 166
Bst4CI	ACNGT	1 cut(s)	268
Bst6I	CTCTTC	2 cut(s)	582, 632
BstAUI	TGTACA	1 cut(s)	129
BstC8I	GCNNGC	3 cut(s)	341, 615, 619
BstDEI	CTNAG	4 cut(s)	26, 72, 191, 201
BstDSI	CCRYGG	1 cut(s)	856
BstF5I	GGATG	6 cut(s)	82, 149, 334, 670, 697, 723
BstHHI	GCGC	1 cut(s)	516
BstKTI	GATC	4 cut(s)	207, 499, 571, 700
BstMBI	GATC	4 cut(s)	204, 496, 568, 697
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 153
BstNI	CCWGG	2 cut(s)	149, 166
BstNSI	RCATGY	1 cut(s)	641
BstSCI	CCNGG	2 cut(s)	147, 164
BstSFI	CTRYAG	1 cut(s)	102
BstV2I	GAAGAC	1 cut(s)	252
BsuI	GTATCC	1 cut(s)	863
BsuRI	GGCC	1 cut(s)	45
BtgI	CCRYGG	1 cut(s)	856
BtsCI	GGATG	6 cut(s)	82, 149, 334, 670, 697, 723
BtsI	GCAGTG	1 cut(s)	555
BtsIMutI	CAGTG	1 cut(s)	555
BveI	ACCTGC	2 cut(s)	19, 507
Cac8I	GCNNGC	3 cut(s)	341, 615, 619
CfoI	GCGC	1 cut(s)	516
Csp6I	GTAC	3 cut(s)	130, 220, 520
CviAII	CATG	4 cut(s)	15, 109, 638, 763
CviQI	GTAC	3 cut(s)	130, 220, 520
DdeI	CTNAG	4 cut(s)	26, 72, 191, 201
DpnI	GATC	4 cut(s)	206, 498, 570, 699
DpnII	GATC	4 cut(s)	204, 496, 568, 697
Eam1104I	CTCTTC	2 cut(s)	582, 632
EarI	CTCTTC	2 cut(s)	582, 632
EcoRII	CCWGG	2 cut(s)	147, 164
FaeI	CATG	4 cut(s)	18, 112, 641, 766
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FatI	CATG	4 cut(s)	14, 108, 637, 762
FokI	GGATG	6 cut(s)	89, 156, 341, 677, 704, 710
FspBI	CTAG	2 cut(s)	225, 578
FspI	TGCGCA	1 cut(s)	515
GlaI	GCGC	1 cut(s)	515
HaeIII	GGCC	1 cut(s)	45
HapII	CCGG	1 cut(s)	466
HhaI	GCGC	1 cut(s)	516
Hin1II	CATG	4 cut(s)	18, 112, 641, 766
Hin6I	GCGC	1 cut(s)	514
HinP1I	GCGC	1 cut(s)	514
HindIII	AAGCTT	2 cut(s)	341, 611
HinfI	GANTC	2 cut(s)	19, 332
HpaII	CCGG	1 cut(s)	466
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	3 cut(s)	132, 220, 522
Hpy188I	TCNGA	4 cut(s)	194, 544, 565, 823
Hpy188III	TCNNGA	3 cut(s)	466, 578, 644
Hpy8I	GTNNAC	3 cut(s)	132, 220, 522
HpyAV	CCTTC	3 cut(s)	54, 487, 600
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	5 cut(s)	14, 80, 156, 617, 875
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 153
HpyF3I	CTNAG	4 cut(s)	26, 72, 191, 201
HpySE526I	ACGT	1 cut(s)	51
Hsp92II	CATG	4 cut(s)	18, 112, 641, 766
HspAI	GCGC	1 cut(s)	514
Kpn2I	TCCGGA	1 cut(s)	465
Kzo9I	GATC	4 cut(s)	204, 496, 568, 697
LmnI	GCTCC	2 cut(s)	397, 437
LweI	GCATC	3 cut(s)	67, 134, 151
MaeI	CTAG	2 cut(s)	225, 578
MaeII	ACGT	1 cut(s)	51
MaeIII	GTNAC	1 cut(s)	716
MalI	GATC	4 cut(s)	206, 498, 570, 699
MboI	GATC	4 cut(s)	204, 496, 568, 697
MboII	GAAGA	7 cut(s)	196, 252, 274, 428, 599, 619, 836
MfeI	CAATTG	1 cut(s)	702
MluCI	AATT	9 cut(s)	248, 459, 479, 599, 652, 702, 738, 773, 869
MlyI	GAGTC	1 cut(s)	341
MnlI	CCTC	7 cut(s)	67, 296, 559, 583, 640, 655, 859
MroI	TCCGGA	1 cut(s)	465
MseI	TTAA	4 cut(s)	36, 458, 776, 886
MslI	CAYNNNNRTG	1 cut(s)	861
MspI	CCGG	1 cut(s)	466
MspR9I	CCNGG	2 cut(s)	149, 166
MunI	CAATTG	1 cut(s)	702
MvaI	CCWGG	2 cut(s)	149, 166
MwoI	GCNNNNNNNGC	2 cut(s)	77, 153
NdeII	GATC	4 cut(s)	204, 496, 568, 697
NlaIII	CATG	4 cut(s)	18, 112, 641, 766
NlaIV	GGNNCC	1 cut(s)	671
NmuCI	GTSAC	1 cut(s)	716
NsbI	TGCGCA	1 cut(s)	515
NspI	RCATGY	1 cut(s)	641
OliI	CACNNNNGTG	1 cut(s)	861
PciI	ACATGT	1 cut(s)	637
PfeI	GAWTC	1 cut(s)	19
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
PscI	ACATGT	1 cut(s)	637
PsiI	TTATAA	1 cut(s)	791
Psp6I	CCWGG	2 cut(s)	147, 164
PspGI	CCWGG	2 cut(s)	147, 164
PspN4I	GGNNCC	1 cut(s)	671
RsaI	GTAC	3 cut(s)	131, 221, 521
RsaNI	GTAC	3 cut(s)	130, 220, 520
RseI	CAYNNNNRTG	1 cut(s)	861
SaqAI	TTAA	4 cut(s)	36, 458, 776, 886
Sau3AI	GATC	4 cut(s)	204, 496, 568, 697
SchI	GAGTC	1 cut(s)	341
ScrFI	CCNGG	2 cut(s)	149, 166
SfaNI	GCATC	3 cut(s)	67, 134, 151
SfcI	CTRYAG	1 cut(s)	102
SmiMI	CAYNNNNRTG	1 cut(s)	861
SmlI	CTYRAG	1 cut(s)	644
SmoI	CTYRAG	1 cut(s)	644
Sse9I	AATT	9 cut(s)	248, 459, 479, 599, 652, 702, 738, 773, 869
SspI	AATATT	2 cut(s)	126, 211
SspMI	CTAG	2 cut(s)	225, 578
StyD4I	CCNGG	2 cut(s)	147, 164
TaaI	ACNGT	1 cut(s)	268
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	2 cut(s)	597, 771
TasI	AATT	9 cut(s)	248, 459, 479, 599, 652, 702, 738, 773, 869
TatI	WGTACW	1 cut(s)	129
TfiI	GAWTC	1 cut(s)	19
Tru1I	TTAA	4 cut(s)	36, 458, 776, 886
Tru9I	TTAA	4 cut(s)	36, 458, 776, 886
TscAI	CASTG	1 cut(s)	555
TseFI	GTSAC	1 cut(s)	716
Tsp45I	GTSAC	1 cut(s)	716
TspDTI	ATGAA	6 cut(s)	102, 125, 303, 327, 462, 488
TspGWI	ACGGA	1 cut(s)	873
TspRI	CASTG	1 cut(s)	555
XapI	RAATTY	5 cut(s)	248, 479, 599, 652, 869
XbaI	TCTAGA	1 cut(s)	577
XceI	RCATGY	1 cut(s)	641
XcmI	CCANNNNNNNNNTGG	1 cut(s)	53
XspI	CTAG	2 cut(s)	225, 578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.