Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0018051

Physical Location & Seq

Genomic Coordinates Reverse (-)

761386 .. 762168

Gene Structure 783 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g01360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGTCGACGGAGAAAAGAAAATATATGCTCTCATAGCGGAGGATGACCGTGTCACTCAGATGCGCCACCGTATGCTCCTAAAACGGTTCAAATGCGAAAGTCTAGTTGCAGGGAATGGAAAGGAAGCAATCGATCTATATCGCTCGGGAGCTAGATTTGATGTTGTTCTTATGGATATGGAGATGCCTATTATGAATGGACTCGAGGCAACAAAGGAACTACGAGCAATGGGTTTTGAAGGCCTTATTGTTGGTGTTACTTCTCGTGATCTTGAATTTGCAAAACAAGTATTCAATGAAGCCGGTGCAGATTCTTGTTATGAAAAGCCTCTAACAACCGAATATGTTACATCCATTCTTCAGAAACTAGACAATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0080090 GO:0101006 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Response_reg

Protein Analysis

127

Amino Acids

14.25

Weight (kDa)

5.07

Isoelectric Point (pI)

22.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	11 - 118	2.4e-17	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0018051)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01360
rosa_chinensis	RchiOBHm_Chr3g0448931
rosa_laevigata	RLG00000025865
rosa_multiflora	Rmu_sc0003116.1_g000016
rosa_roxburghii	Rroxscaffold_6G00427110
rosa_rugosa	Rorug02G0617200
rosa_samantha	Rh3AG015600 Rh3BG015700 Rh3CG014700 Rh3DG016000
rosa_wichuraiana	Rw3G001160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	6
AciI	CCGC	1 cut(s)	38
AcsI	RAATTY	1 cut(s)	275
AcuI	CTGAAG	1 cut(s)	344
AgsI	TTSAA	4 cut(s)	91, 239, 275, 295
AluBI	AGCT	1 cut(s)	152
AluI	AGCT	1 cut(s)	152
Ama87I	CYCGRG	2 cut(s)	145, 203
AoxI	GGCC	1 cut(s)	241
ApoI	RAATTY	1 cut(s)	275
AspLEI	GCGC	1 cut(s)	66
AvaI	CYCGRG	2 cut(s)	145, 203
BauI	CACGAG	1 cut(s)	264
BfaI	CTAG	4 cut(s)	104, 153, 368, 379
BmeT110I	CYCGRG	2 cut(s)	145, 203
BmsI	GCATC	2 cut(s)	51, 174
Bsa29I	ATCGAT	1 cut(s)	132
BsaBI	GATNNNNATC	1 cut(s)	138
Bse118I	RCCGGY	1 cut(s)	302
Bse3DI	GCAATG	1 cut(s)	234
Bse8I	GATNNNNATC	1 cut(s)	138
BseCI	ATCGAT	1 cut(s)	132
BseGI	GGATG	2 cut(s)	49, 350
BseJI	GATNNNNATC	1 cut(s)	138
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	1 cut(s)	71
BsgI	GTGCAG	1 cut(s)	327
BshFI	GGCC	1 cut(s)	243
BshVI	ATCGAT	1 cut(s)	132
BsiHKCI	CYCGRG	2 cut(s)	145, 203
BsiSI	CCGG	1 cut(s)	303
BsnI	GGCC	1 cut(s)	243
BsoBI	CYCGRG	2 cut(s)	145, 203
Bsp143I	GATC	2 cut(s)	133, 268
BspACI	CCGC	1 cut(s)	38
BspANI	GGCC	1 cut(s)	243
BspCNI	CTCAG	1 cut(s)	70
BspDI	ATCGAT	1 cut(s)	132
BsrDI	GCAATG	1 cut(s)	234
BsrFI	RCCGGY	1 cut(s)	302
BssAI	RCCGGY	1 cut(s)	302
BssMI	GATC	2 cut(s)	133, 268
BssSI	CACGAG	1 cut(s)	264
Bst2BI	CACGAG	1 cut(s)	264
Bst4CI	ACNGT	3 cut(s)	50, 71, 87
BstDEI	CTNAG	1 cut(s)	57
BstF5I	GGATG	2 cut(s)	49, 350
BstHHI	GCGC	1 cut(s)	66
BstKTI	GATC	2 cut(s)	136, 271
BstMBI	GATC	2 cut(s)	133, 268
BstMWI	GCNNNNNNNGC	1 cut(s)	35
Bsu15I	ATCGAT	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	243
BsuTUI	ATCGAT	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	49, 350
CfoI	GCGC	1 cut(s)	66
Cfr10I	RCCGGY	1 cut(s)	302
ClaI	ATCGAT	1 cut(s)	132
CviJI	RGCY	4 cut(s)	152, 243, 302, 328
CviKI_1	RGCY	4 cut(s)	152, 243, 302, 328
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	2 cut(s)	135, 270
DpnII	GATC	2 cut(s)	133, 268
Eco147I	AGGCCT	1 cut(s)	243
Eco57I	CTGAAG	1 cut(s)	344
Eco88I	CYCGRG	2 cut(s)	145, 203
FblI	GTMKAC	1 cut(s)	6
FokI	GGATG	2 cut(s)	56, 337
FspBI	CTAG	4 cut(s)	104, 153, 368, 379
GlaI	GCGC	1 cut(s)	65
HaeIII	GGCC	1 cut(s)	243
HapII	CCGG	1 cut(s)	303
HhaI	GCGC	1 cut(s)	66
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HinfI	GANTC	2 cut(s)	201, 311
HpaII	CCGG	1 cut(s)	303
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	2 cut(s)	60, 363
Hpy188III	TCNNGA	3 cut(s)	147, 266, 272
Hpy8I	GTNNAC	1 cut(s)	7
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	1 cut(s)	233
HpyCH4III	ACNGT	3 cut(s)	50, 71, 87
HpyCH4V	TGCA	3 cut(s)	110, 281, 308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	1 cut(s)	57
HspAI	GCGC	1 cut(s)	64
Kzo9I	GATC	2 cut(s)	133, 268
LmnI	GCTCC	2 cut(s)	81, 149
LpnPI	CCDG	2 cut(s)	96, 316
LweI	GCATC	2 cut(s)	51, 174
MaeI	CTAG	4 cut(s)	104, 153, 368, 379
MaeIII	GTNAC	3 cut(s)	52, 256, 346
MalI	GATC	2 cut(s)	135, 270
MboI	GATC	2 cut(s)	133, 268
MboII	GAAGA	1 cut(s)	350
MluCI	AATT	1 cut(s)	275
MlyI	GAGTC	1 cut(s)	195
MnlI	CCTC	3 cut(s)	34, 199, 339
MslI	CAYNNNNRTG	1 cut(s)	59
MspI	CCGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	1 cut(s)	35
NdeII	GATC	2 cut(s)	133, 268
NmuCI	GTSAC	1 cut(s)	52
PaeR7I	CTCGAG	1 cut(s)	203
PceI	AGGCCT	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	311
PflFI	GACNNNGTC	1 cut(s)	50
PleI	GAGTC	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	195
PspXI	VCTCGAGB	1 cut(s)	203
PsyI	GACNNNGTC	1 cut(s)	50
RseI	CAYNNNNRTG	1 cut(s)	59
SalI	GTCGAC	1 cut(s)	5
Sau3AI	GATC	2 cut(s)	133, 268
SchI	GAGTC	1 cut(s)	195
SetI	ASST	1 cut(s)	154
SfaNI	GCATC	2 cut(s)	51, 174
Sfr274I	CTCGAG	1 cut(s)	203
SlaI	CTCGAG	1 cut(s)	203
SmiMI	CAYNNNNRTG	1 cut(s)	59
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	1 cut(s)	275
SseBI	AGGCCT	1 cut(s)	243
SsiI	CCGC	1 cut(s)	38
SspMI	CTAG	4 cut(s)	104, 153, 368, 379
StuI	AGGCCT	1 cut(s)	243
TaaI	ACNGT	3 cut(s)	50, 71, 87
TaqI	TCGA	3 cut(s)	6, 132, 204
TasI	AATT	1 cut(s)	275
TfiI	GAWTC	1 cut(s)	311
TseFI	GTSAC	1 cut(s)	52
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	3 cut(s)	209, 312, 336
TspGWI	ACGGA	1 cut(s)	24
Tth111I	GACNNNGTC	1 cut(s)	50
XapI	RAATTY	1 cut(s)	275
XhoI	CTCGAG	1 cut(s)	203
XmiI	GTMKAC	1 cut(s)	6
XspI	CTAG	4 cut(s)	104, 153, 368, 379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.