Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0018051

Physical Location & Seq

Genomic Coordinates Forward (+)

48775969 .. 48776441

Gene Structure 473 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025865

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGTCGGAGAAAAGAAAATATATGCACTCATCGTGGAGGATGACCGAGTCACTCAGATGCGCCACCGTATGCTCCTAAAACGATTCAAATGTGAAAGTCATGTTGCGGGGAATGGAAAGGAAGCAATCGATCTCTTTCGCTCGGGAGCTAGTTTTGATGTTGTTCTCATGGATATGGAGATGCCTGTTATGAATGGACTCGAGGCAACGAAGGAACTACGAGCAATGGGTTTTGAAGGCCTTATTGTTGGCGTCACTTCTCGTGATCTTGATTTTGCAAAACAAGTTTTCAATGAAGCGGGCGCAGATTCTTGTTATGAAAAGCCTCTAACTCCTGAATATGTTACCTCCATCCTTCAAGAAATAAACGATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0080090 GO:0101006 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Response_reg

Protein Analysis

126

Amino Acids

14.07

Weight (kDa)

4.92

Isoelectric Point (pI)

28.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	10 - 118	7.9e-19	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018051)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01360
rosa_chinensis	RchiOBHm_Chr3g0448931
rosa_laevigata	RLG00000025865
rosa_multiflora	Rmu_sc0003116.1_g000016
rosa_roxburghii	Rroxscaffold_6G00427110
rosa_rugosa	Rorug02G0617200
rosa_samantha	Rh3AG015600 Rh3BG015700 Rh3CG014700 Rh3DG016000
rosa_wichuraiana	Rw3G001160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	107, 299
AcyI	GRCGYC	1 cut(s)	252
AgsI	TTSAA	4 cut(s)	88, 236, 292, 359
AluBI	AGCT	1 cut(s)	149
AluI	AGCT	1 cut(s)	149
Ama87I	CYCGRG	2 cut(s)	142, 200
AoxI	GGCC	1 cut(s)	238
AspLEI	GCGC	2 cut(s)	63, 305
AvaI	CYCGRG	2 cut(s)	142, 200
BauI	CACGAG	1 cut(s)	261
BccI	CCATC	1 cut(s)	359
BfaI	CTAG	2 cut(s)	150, 376
BmeT110I	CYCGRG	2 cut(s)	142, 200
BmsI	GCATC	2 cut(s)	48, 171
Bsa29I	ATCGAT	1 cut(s)	129
BsaHI	GRCGYC	1 cut(s)	252
Bse3DI	GCAATG	1 cut(s)	231
BseCI	ATCGAT	1 cut(s)	129
BseGI	GGATG	2 cut(s)	46, 351
BseMI	GCAATG	1 cut(s)	231
BseMII	CTCAG	1 cut(s)	68
BshFI	GGCC	1 cut(s)	240
BshVI	ATCGAT	1 cut(s)	129
BsiHKCI	CYCGRG	2 cut(s)	142, 200
BsnI	GGCC	1 cut(s)	240
BsoBI	CYCGRG	2 cut(s)	142, 200
Bsp143I	GATC	2 cut(s)	130, 265
BspACI	CCGC	2 cut(s)	107, 299
BspANI	GGCC	1 cut(s)	240
BspCNI	CTCAG	1 cut(s)	67
BspDI	ATCGAT	1 cut(s)	129
BsrDI	GCAATG	1 cut(s)	231
BssMI	GATC	2 cut(s)	130, 265
BssNI	GRCGYC	1 cut(s)	252
BssSI	CACGAG	1 cut(s)	261
Bst2BI	CACGAG	1 cut(s)	261
Bst4CI	ACNGT	1 cut(s)	68
BstACI	GRCGYC	1 cut(s)	252
BstC8I	GCNNGC	1 cut(s)	301
BstDEI	CTNAG	1 cut(s)	54
BstF5I	GGATG	2 cut(s)	46, 351
BstHHI	GCGC	2 cut(s)	63, 305
BstKTI	GATC	2 cut(s)	133, 268
BstMBI	GATC	2 cut(s)	130, 265
Bsu15I	ATCGAT	1 cut(s)	129
BsuRI	GGCC	1 cut(s)	240
BsuTUI	ATCGAT	1 cut(s)	129
BtsCI	GGATG	2 cut(s)	46, 351
Cac8I	GCNNGC	1 cut(s)	301
CfoI	GCGC	2 cut(s)	63, 305
ClaI	ATCGAT	1 cut(s)	129
CseI	GACGC	1 cut(s)	241
CviAII	CATG	2 cut(s)	101, 169
CviJI	RGCY	3 cut(s)	149, 240, 325
CviKI_1	RGCY	3 cut(s)	149, 240, 325
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	2 cut(s)	132, 267
DpnII	GATC	2 cut(s)	130, 265
Eco147I	AGGCCT	1 cut(s)	240
Eco88I	CYCGRG	2 cut(s)	142, 200
FaeI	CATG	2 cut(s)	104, 172
FaiI	YATR	9 cut(s)	22, 24, 71, 102, 170, 176, 191, 318, 342
FatI	CATG	2 cut(s)	100, 168
FauI	CCCGC	2 cut(s)	100, 292
FokI	GGATG	2 cut(s)	53, 338
FspBI	CTAG	2 cut(s)	150, 376
GlaI	GCGC	2 cut(s)	62, 304
HaeIII	GGCC	1 cut(s)	240
HgaI	GACGC	1 cut(s)	241
HhaI	GCGC	2 cut(s)	63, 305
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	2 cut(s)	104, 172
Hin6I	GCGC	2 cut(s)	61, 303
HinP1I	GCGC	2 cut(s)	61, 303
HinfI	GANTC	4 cut(s)	48, 84, 198, 308
Hpy188I	TCNGA	2 cut(s)	8, 57
Hpy188III	TCNNGA	5 cut(s)	144, 263, 269, 335, 359
HpyAV	CCTTC	3 cut(s)	205, 230, 365
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4V	TGCA	2 cut(s)	26, 278
HpyF3I	CTNAG	1 cut(s)	54
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	2 cut(s)	104, 172
HspAI	GCGC	2 cut(s)	61, 303
Kzo9I	GATC	2 cut(s)	130, 265
LmnI	GCTCC	2 cut(s)	78, 146
LpnPI	CCDG	2 cut(s)	198, 348
LweI	GCATC	2 cut(s)	48, 171
MaeI	CTAG	2 cut(s)	150, 376
MaeIII	GTNAC	3 cut(s)	49, 253, 343
MalI	GATC	2 cut(s)	132, 267
MboI	GATC	2 cut(s)	130, 265
MlyI	GAGTC	2 cut(s)	57, 192
MnlI	CCTC	4 cut(s)	31, 196, 336, 358
MslI	CAYNNNNRTG	2 cut(s)	56, 173
NdeII	GATC	2 cut(s)	130, 265
NlaIII	CATG	2 cut(s)	104, 172
NmuCI	GTSAC	2 cut(s)	49, 253
PaeR7I	CTCGAG	1 cut(s)	200
PceI	AGGCCT	1 cut(s)	240
PfeI	GAWTC	2 cut(s)	84, 308
PflFI	GACNNNGTC	1 cut(s)	47
PleI	GAGTC	2 cut(s)	56, 192
PpsI	GAGTC	2 cut(s)	56, 192
PspXI	VCTCGAGB	1 cut(s)	200
PsyI	GACNNNGTC	1 cut(s)	47
RseI	CAYNNNNRTG	2 cut(s)	56, 173
Sau3AI	GATC	2 cut(s)	130, 265
SchI	GAGTC	2 cut(s)	57, 192
SetI	ASST	2 cut(s)	151, 350
SfaNI	GCATC	2 cut(s)	48, 171
Sfr274I	CTCGAG	1 cut(s)	200
SlaI	CTCGAG	1 cut(s)	200
SmiMI	CAYNNNNRTG	2 cut(s)	56, 173
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
SseBI	AGGCCT	1 cut(s)	240
SsiI	CCGC	2 cut(s)	107, 299
SspMI	CTAG	2 cut(s)	150, 376
StuI	AGGCCT	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	68
TaqI	TCGA	2 cut(s)	129, 201
TaqII	GACCGA	1 cut(s)	60
TfiI	GAWTC	2 cut(s)	84, 308
TseFI	GTSAC	2 cut(s)	49, 253
Tsp45I	GTSAC	2 cut(s)	49, 253
TspDTI	ATGAA	3 cut(s)	206, 309, 333
Tth111I	GACNNNGTC	1 cut(s)	47
XhoI	CTCGAG	1 cut(s)	200
XspI	CTAG	2 cut(s)	150, 376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.