Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018051

Physical Location & Seq

Genomic Coordinates Reverse (-)

950965 .. 951489

Gene Structure 525 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41635

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGTCATTTCTGGTTTTACGTACTCCTGAAGTTGAGCAGCAAAAGATGATGGTCGGAGAAAAGAAAATATATGCACTCATCGTGGAGGATGACCGAGTCACTCAGATGCGCCACCGTATGCTCCTAAAACGATTCAAATGTGAAAGTCATGTTGCGGGGAATGGAAAGGAAGCAATCGATCTCTTTCGCTCGGGAGCTAGTTTTGATGTTGTTCTCATGGATATGGAGATGCCTGTTATGAATGGACTCGAGGCAACGAAGGAACTACGAGCAATGGGTTTTGAAGGCCATATTGTTGGTGTCACTTCTCGTGATCTTGATTTTGCAAAACAAGTTTTCAATGAAGCGGGCGCAGATTCTTGCTATGAAAAGCCTCTAACTCCTGAATATGTTACCTCCATTCTTCAAGAAATAAACGATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0080090 GO:0101006 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Response_reg

Protein Analysis

141

Amino Acids

16.01

Weight (kDa)

5.09

Isoelectric Point (pI)

39.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	26 - 134	3.8e-19	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0018051)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01360
rosa_chinensis	RchiOBHm_Chr3g0448931
rosa_laevigata	RLG00000025865
rosa_multiflora	Rmu_sc0003116.1_g000016
rosa_roxburghii	Rroxscaffold_6G00427110
rosa_rugosa	Rorug02G0617200
rosa_samantha	Rh3AG015600 Rh3BG015700 Rh3CG014700 Rh3DG016000
rosa_wichuraiana	Rw3G001160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	155, 347
AcuI	CTGAAG	1 cut(s)	48
AfaI	GTAC	1 cut(s)	22
AgsI	TTSAA	4 cut(s)	136, 284, 340, 407
AluBI	AGCT	1 cut(s)	197
AluI	AGCT	1 cut(s)	197
Ama87I	CYCGRG	2 cut(s)	190, 248
AoxI	GGCC	1 cut(s)	286
ApeKI	GCWGC	1 cut(s)	37
AspLEI	GCGC	2 cut(s)	111, 353
AvaI	CYCGRG	2 cut(s)	190, 248
BauI	CACGAG	1 cut(s)	309
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	1 cut(s)	43
BfaI	CTAG	2 cut(s)	198, 424
BisI	GCNGC	1 cut(s)	38
BlsI	GCNGC	1 cut(s)	39
BmeT110I	CYCGRG	2 cut(s)	190, 248
BmsI	GCATC	2 cut(s)	96, 219
Bsa29I	ATCGAT	1 cut(s)	177
BsaAI	YACGTR	1 cut(s)	20
Bse3DI	GCAATG	1 cut(s)	279
BseCI	ATCGAT	1 cut(s)	177
BseGI	GGATG	1 cut(s)	94
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	49
BshFI	GGCC	1 cut(s)	288
BshVI	ATCGAT	1 cut(s)	177
BsiHKCI	CYCGRG	2 cut(s)	190, 248
BsnI	GGCC	1 cut(s)	288
BsoBI	CYCGRG	2 cut(s)	190, 248
Bsp143I	GATC	2 cut(s)	178, 313
BspACI	CCGC	2 cut(s)	155, 347
BspANI	GGCC	1 cut(s)	288
BspCNI	CTCAG	1 cut(s)	115
BspDI	ATCGAT	1 cut(s)	177
BsrDI	GCAATG	1 cut(s)	279
BssMI	GATC	2 cut(s)	178, 313
BssSI	CACGAG	1 cut(s)	309
Bst2BI	CACGAG	1 cut(s)	309
Bst4CI	ACNGT	1 cut(s)	116
BstBAI	YACGTR	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	349
BstDEI	CTNAG	1 cut(s)	102
BstF5I	GGATG	1 cut(s)	94
BstHHI	GCGC	2 cut(s)	111, 353
BstKTI	GATC	2 cut(s)	181, 316
BstMBI	GATC	2 cut(s)	178, 313
BstSNI	TACGTA	1 cut(s)	20
BstV1I	GCAGC	1 cut(s)	49
BstXI	CCANNNNNNTGG	1 cut(s)	296
Bsu15I	ATCGAT	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	288
BsuTUI	ATCGAT	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	94
Cac8I	GCNNGC	1 cut(s)	349
CfoI	GCGC	2 cut(s)	111, 353
ClaI	ATCGAT	1 cut(s)	177
Csp6I	GTAC	1 cut(s)	21
CviAII	CATG	2 cut(s)	149, 217
CviJI	RGCY	3 cut(s)	197, 288, 373
CviKI_1	RGCY	3 cut(s)	197, 288, 373
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	2 cut(s)	180, 315
DpnII	GATC	2 cut(s)	178, 313
Eco105I	TACGTA	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	48
Eco88I	CYCGRG	2 cut(s)	190, 248
FaeI	CATG	2 cut(s)	152, 220
FatI	CATG	2 cut(s)	148, 216
FauI	CCCGC	2 cut(s)	148, 340
Fnu4HI	GCNGC	1 cut(s)	38
FokI	GGATG	1 cut(s)	101
Fsp4HI	GCNGC	1 cut(s)	38
FspBI	CTAG	2 cut(s)	198, 424
GlaI	GCGC	2 cut(s)	110, 352
GluI	GCNGC	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	288
HhaI	GCGC	2 cut(s)	111, 353
Hin1II	CATG	2 cut(s)	152, 220
Hin6I	GCGC	2 cut(s)	109, 351
HinP1I	GCGC	2 cut(s)	109, 351
HinfI	GANTC	4 cut(s)	96, 132, 246, 356
Hpy188I	TCNGA	2 cut(s)	56, 105
Hpy188III	TCNNGA	6 cut(s)	26, 192, 311, 317, 383, 407
HpyAV	CCTTC	2 cut(s)	253, 278
HpyCH4III	ACNGT	1 cut(s)	116
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	2 cut(s)	74, 326
HpyF3I	CTNAG	1 cut(s)	102
HpySE526I	ACGT	1 cut(s)	19
Hsp92II	CATG	2 cut(s)	152, 220
HspAI	GCGC	2 cut(s)	109, 351
Kzo9I	GATC	2 cut(s)	178, 313
LmnI	GCTCC	2 cut(s)	126, 194
LpnPI	CCDG	3 cut(s)	39, 246, 396
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	2 cut(s)	96, 219
MaeI	CTAG	2 cut(s)	198, 424
MaeII	ACGT	1 cut(s)	19
MaeIII	GTNAC	3 cut(s)	97, 301, 391
MalI	GATC	2 cut(s)	180, 315
MboI	GATC	2 cut(s)	178, 313
MboII	GAAGA	1 cut(s)	395
MlyI	GAGTC	2 cut(s)	105, 240
MmeI	TCCRAC	1 cut(s)	34
MnlI	CCTC	4 cut(s)	79, 244, 384, 406
MslI	CAYNNNNRTG	2 cut(s)	104, 221
NdeII	GATC	2 cut(s)	178, 313
NlaIII	CATG	2 cut(s)	152, 220
NmuCI	GTSAC	2 cut(s)	97, 301
PaeR7I	CTCGAG	1 cut(s)	248
PfeI	GAWTC	2 cut(s)	132, 356
PflFI	GACNNNGTC	1 cut(s)	95
PkrI	GCNGC	1 cut(s)	39
PleI	GAGTC	2 cut(s)	104, 240
PpsI	GAGTC	2 cut(s)	104, 240
Ppu21I	YACGTR	1 cut(s)	20
PspXI	VCTCGAGB	1 cut(s)	248
PsyI	GACNNNGTC	1 cut(s)	95
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
RseI	CAYNNNNRTG	2 cut(s)	104, 221
SatI	GCNGC	1 cut(s)	38
Sau3AI	GATC	2 cut(s)	178, 313
SchI	GAGTC	2 cut(s)	105, 240
SetI	ASST	3 cut(s)	22, 199, 398
SfaNI	GCATC	2 cut(s)	96, 219
Sfr274I	CTCGAG	1 cut(s)	248
SlaI	CTCGAG	1 cut(s)	248
SmiMI	CAYNNNNRTG	2 cut(s)	104, 221
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
SnaBI	TACGTA	1 cut(s)	20
SsiI	CCGC	2 cut(s)	155, 347
SspMI	CTAG	2 cut(s)	198, 424
TaaI	ACNGT	1 cut(s)	116
TaiI	ACGT	1 cut(s)	22
TaqI	TCGA	2 cut(s)	177, 249
TaqII	GACCGA	1 cut(s)	108
TfiI	GAWTC	2 cut(s)	132, 356
TseFI	GTSAC	2 cut(s)	97, 301
TseI	GCWGC	1 cut(s)	37
Tsp45I	GTSAC	2 cut(s)	97, 301
TspDTI	ATGAA	3 cut(s)	254, 357, 381
Tth111I	GACNNNGTC	1 cut(s)	95
XhoI	CTCGAG	1 cut(s)	248
XspI	CTAG	2 cut(s)	198, 424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.