FvH4_6g04150

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
2258982 .. 2259975
994 bp
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UTR
Exon/CDS
Intron
FvH4_6g04150.t1

Sequence Viewer

Length: 363 bp
ATGCCTCCACACGGACCTCATGGTGGTGGCGGTGGCGGTGGCGGTGGCGGACCTCACGGAGGTGGAGGTGGAGGATTTGGTGGACCTGGCGGTGGTGGCGGATTTGGTGGACCTGGCGGCCATGGCGGTGGTGGCGGTGGGGGTTTTGGACCTTTCGGCTGCATAGGCAACCTCTGTGGCGGTATAGGCCGCGTTGTATCATCTTGTGCTTATGTCCTGTGCTGCTGCTGTCTACTGGAGAACTGCTTTGGTAGGGGTCCGGGTGGTCCTCACGGTGGGGGTGGTGGCGGTGGCGGTCACGGCGGTGGTGGTCGCGGTGGTGGTGGTGGTCGCGGTGGTGGTGGTGGTGGTGGGCGCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

10.01

Weight (kDa)

8.77

Isoelectric Point (pI)

64.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g04150
malus_domestica MD00G1051100.v1.1
prunus_persica Prupe.6G336000_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0452741

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 232
AccII CGCG 3 cut(s) 192, 315, 333
AcoI YGGCCR 1 cut(s) 118
AfiI CCNNNNNNNGG 5 cut(s) 11, 23, 59, 92, 275
AjnI CCWGG 2 cut(s) 85, 112
AleI CACNNNNGTG 2 cut(s) 60, 303
AoxI GGCC 2 cut(s) 118, 187
ApeKI GCWGC 3 cut(s) 159, 222, 225
AspLEI GCGC 1 cut(s) 357
AspS9I GGNCC 7 cut(s) 14, 50, 83, 110, 149, 257, 266
AsuC2I CCSGG 1 cut(s) 261
AvaII GGWCC 7 cut(s) 14, 50, 83, 110, 149, 257, 266
BbvI GCAGC 3 cut(s) 146, 209, 212
BceAI ACGGC 1 cut(s) 316
BciT130I CCWGG 2 cut(s) 87, 114
BcnI CCSGG 1 cut(s) 261
BfoI RGCGCY 1 cut(s) 358
BisI GCNGC 5 cut(s) 118, 160, 190, 223, 226
BlsI GCNGC 5 cut(s) 119, 161, 191, 224, 227
Bme1390I CCNGG 3 cut(s) 87, 114, 261
Bme18I GGWCC 7 cut(s) 14, 50, 83, 110, 149, 257, 266
BmgT120I GGNCC 7 cut(s) 14, 50, 83, 110, 149, 257, 266
BmiI GGNNCC 1 cut(s) 258
BmrFI CCNGG 3 cut(s) 87, 114, 261
BpmI CTGGAG 1 cut(s) 257
BpuMI CCSGG 1 cut(s) 261
BsaJI CCNNGG 1 cut(s) 121
Bsc4I CCNNNNNNNGG 5 cut(s) 11, 23, 59, 92, 275
Bse1I ACTGG 1 cut(s) 240
BseBI CCWGG 2 cut(s) 87, 114
BseDI CCNNGG 1 cut(s) 121
BseLI CCNNNNNNNGG 5 cut(s) 11, 23, 59, 92, 275
BseNI ACTGG 1 cut(s) 240
BseXI GCAGC 3 cut(s) 146, 209, 212
Bsh1236I CGCG 3 cut(s) 192, 315, 333
BshFI GGCC 2 cut(s) 120, 189
BsiSI CCGG 1 cut(s) 260
BslI CCNNNNNNNGG 5 cut(s) 11, 23, 59, 92, 275
BsnI GGCC 2 cut(s) 120, 189
Bsp19I CCATGG 1 cut(s) 121
BspANI GGCC 2 cut(s) 120, 189
BspFNI CGCG 3 cut(s) 192, 315, 333
BspLI GGNNCC 1 cut(s) 258
BsrI ACTGG 1 cut(s) 240
BssECI CCNNGG 1 cut(s) 121
BssT1I CCWWGG 1 cut(s) 121
Bst2UI CCWGG 2 cut(s) 87, 114
Bst4CI ACNGT 1 cut(s) 275
BstDSI CCRYGG 1 cut(s) 121
BstENI CCTNNNNNAGG 1 cut(s) 57
BstFNI CGCG 3 cut(s) 192, 315, 333
BstH2I RGCGCY 1 cut(s) 358
BstHHI GCGC 1 cut(s) 357
BstMWI GCNNNNNNNGC 6 cut(s) 96, 123, 132, 165, 186, 300
BstNI CCWGG 2 cut(s) 87, 114
BstSCI CCNGG 3 cut(s) 85, 112, 259
BstUI CGCG 3 cut(s) 192, 315, 333
BstV1I GCAGC 3 cut(s) 146, 209, 212
BstXI CCANNNNNNTGG 1 cut(s) 128
BsuRI GGCC 2 cut(s) 120, 189
BtgI CCRYGG 1 cut(s) 121
CfoI GCGC 1 cut(s) 357
Cfr13I GGNCC 7 cut(s) 14, 50, 83, 110, 149, 257, 266
CspCI CAANNNNNGTGG 2 cut(s) 157, 192
CviAII CATG 2 cut(s) 20, 122
CviJI RGCY 3 cut(s) 120, 159, 189
CviKI_1 RGCY 3 cut(s) 120, 159, 189
EaeI YGGCCR 1 cut(s) 118
EciI GGCGGA 2 cut(s) 63, 114
Eco130I CCWWGG 1 cut(s) 121
Eco47I GGWCC 7 cut(s) 14, 50, 83, 110, 149, 257, 266
EcoNI CCTNNNNNAGG 1 cut(s) 57
EcoRII CCWGG 2 cut(s) 85, 112
EcoT14I CCWWGG 1 cut(s) 121
ErhI CCWWGG 1 cut(s) 121
FaeI CATG 2 cut(s) 23, 125
FaiI YATR 5 cut(s) 21, 123, 164, 185, 213
FatI CATG 2 cut(s) 19, 121
FblI GTMKAC 1 cut(s) 232
Fnu4HI GCNGC 5 cut(s) 118, 160, 190, 223, 226
Fsp4HI GCNGC 5 cut(s) 118, 160, 190, 223, 226
GlaI GCGC 1 cut(s) 356
GluI GCNGC 5 cut(s) 118, 160, 190, 223, 226
GsuI CTGGAG 1 cut(s) 257
HaeII RGCGCY 1 cut(s) 358
HaeIII GGCC 2 cut(s) 120, 189
HapII CCGG 1 cut(s) 260
HhaI GCGC 1 cut(s) 357
Hin1II CATG 2 cut(s) 23, 125
Hin6I GCGC 1 cut(s) 355
HinP1I GCGC 1 cut(s) 355
HpaII CCGG 1 cut(s) 260
Hpy166II GTNNAC 3 cut(s) 83, 110, 233
Hpy188I TCNGA 1 cut(s) 362
Hpy8I GTNNAC 3 cut(s) 83, 110, 233
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4V TGCA 1 cut(s) 162
HpyF10VI GCNNNNNNNGC 6 cut(s) 96, 123, 132, 165, 186, 300
Hsp92II CATG 2 cut(s) 23, 125
HspAI GCGC 1 cut(s) 355
LpnPI CCDG 7 cut(s) 72, 99, 99, 126, 221, 230, 273
Lsp1109I GCAGC 3 cut(s) 146, 209, 212
MaeIII GTNAC 1 cut(s) 296
MnlI CCTC 8 cut(s) 15, 27, 53, 59, 63, 65, 182, 279
MslI CAYNNNNRTG 4 cut(s) 24, 60, 126, 303
MspI CCGG 1 cut(s) 260
MspR9I CCNGG 3 cut(s) 87, 114, 261
MvaI CCWGG 2 cut(s) 87, 114
MvnI CGCG 3 cut(s) 192, 315, 333
MwoI GCNNNNNNNGC 6 cut(s) 96, 123, 132, 165, 186, 300
NciI CCSGG 1 cut(s) 261
NcoI CCATGG 1 cut(s) 121
NlaIII CATG 2 cut(s) 23, 125
NlaIV GGNNCC 1 cut(s) 258
NmuCI GTSAC 1 cut(s) 296
OliI CACNNNNGTG 2 cut(s) 60, 303
PkrI GCNGC 5 cut(s) 119, 161, 191, 224, 227
Psp6I CCWGG 2 cut(s) 85, 112
PspGI CCWGG 2 cut(s) 85, 112
PspN4I GGNNCC 1 cut(s) 258
PspPI GGNCC 7 cut(s) 14, 50, 83, 110, 149, 257, 266
RseI CAYNNNNRTG 4 cut(s) 24, 60, 126, 303
SatI GCNGC 5 cut(s) 118, 160, 190, 223, 226
Sau96I GGNCC 7 cut(s) 14, 50, 83, 110, 149, 257, 266
ScrFI CCNGG 3 cut(s) 87, 114, 261
SetI ASST 8 cut(s) 19, 55, 64, 70, 88, 115, 154, 174
SinI GGWCC 7 cut(s) 14, 50, 83, 110, 149, 257, 266
SmiMI CAYNNNNRTG 4 cut(s) 24, 60, 126, 303
StyD4I CCNGG 3 cut(s) 85, 112, 259
StyI CCWWGG 1 cut(s) 121
TaaI ACNGT 1 cut(s) 275
TauI GCSGC 2 cut(s) 120, 192
TseFI GTSAC 1 cut(s) 296
TseI GCWGC 3 cut(s) 159, 222, 225
Tsp45I GTSAC 1 cut(s) 296
TspGWI ACGGA 2 cut(s) 27, 72
VpaK11BI GGWCC 7 cut(s) 14, 50, 83, 110, 149, 257, 266
XagI CCTNNNNNAGG 1 cut(s) 57
XcmI CCANNNNNNNNNTGG 1 cut(s) 128
XmiI GTMKAC 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.