FvH4_6g04660

Type I 3-dehydroquinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016868
Physical Location & Seq
Forward (+)
2567865 .. 2571188
3324 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g04660.t1

Sequence Viewer

Length: 1593 bp
ATGGGAAGCCTTCCGTTTACTACCTCTGATCTTCACACAAGCACTGGAGGATTTCTGAGCAGCCCAACATTGCTATGTACACCCCTAATGGGAACCACAGTGGACCAAATGCTTATTGAGATGCACAAGGCTAAGGAAATTGGTTCTGATGTTGTGGAAATCAGGCTGGACTGTTTGAGAAACTTTAACCCAAGTTCAGATCTTCAAATACTTATCAAGCAGAGTCCTCTGCCTACTCTTGTCACTTACAGGCCAGTTTGGGAAGGCGGTCAATATGAAGGTGATGAAACCAAGCGACAAGATGCTCTTCGGTCAGCCATGGAACTGGGAGCTAACTATATTGATATTGAGCTTGAGGTTGCCCATGAATTCAACAATTCCATCTATGAAAAGAAGCCTGACAACTTCAAAGTCATTGTTTCTTCTCACAACTTTCACAACACTCCATCTTCCGAGGCAATCGGAAACCTTGTGGCGAGAATCCAAGCCACTGGAGCTGACATTGTGAAGATTGCAACTACAGCGTTGGACATTACAGATTGTGCCAGAATTTTCCAGATTACTGTGCATTCACAGGTCCCAACAATAGGTATTGTTATGGGAGAGAGAGGTTTGATTTCACGACTACTTAGCCCCAAGTTTGGTGGATATCTTACCTATGGTGCACTAGAAGCCGGTGCGATATCAGCTCCTGGGCAACCAACTGCGAGAGACTTGTTGGATTTATACAACTTCAGACTTATTAGACCTGATACCAAAATCTATGGGATTATTGGGAAGCCTGTTGGTCACAGCAAGAGTCCTCTACTATTCAATGCAGCATTCAAGTCAGTTGGCCTTAATGCAGTCTATGTTCATTTTCTGGTGGATGATGTTGAGAAGTTTTTCAACACATATTCATCCGTTGACTTTTCAGGATGCAGTTGTACCATTCCACATAAGGAGGCAGCACTCAAATGCATGGATGAGATTGATTCCATTGCCAAGAAAATCGGAGCTATCAACAACATTGTCAGGAAGCCTGATGGGAGGTTAGTGGCTTTCAACACCGACTACATTGGCTCCATCAGTGGCATTGAGGACGAACTACGAGGTATGAACGGTGCCATTCCTGCTGGTAAATCACCCCTGGCTGGAAAGTTGTTTGTGGTCTTGGGAGCCGGTGGTGCTGGCAAGTCACTTGTATATGGTGCTGCACAGAAAGGAGCAAGAGTTGTATGTGCCAACCGAACATATGAAAGAGCCAAGGAGCTGGCTGACAAAGTAGGGGGACAAGCTATGACTCTTGAAGAAGTTGAAAATTTCCATCCGGAAGAGGGAATGATTCTTGCCAACACTACATCTGTGGGGATGAAGCCTAACGTTGATGACACTCCTATCTCCAAACAAGCTCTGAAACACTATTGCTTAGTTTTTGATGCCATCTATACGCCAAAAGAGACTAGACTCCTCCGAGAAGCAAAAGAGACTGGAGCTGCTGTTGTATATGGGACAGAGATGTTGATTAGGCAAGGGTTTGAACAATACAAGAACTTCACTGGTTTGCCAGCACCTGAAGCATTGTTTAGAGAGCTCATGGAGAAGCATGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230
Pfam Domains
Protein Families
DHquinase_I Shikimate_DH Shikimate_dh_N

Protein Analysis

531

Amino Acids

57.68

Weight (kDa)

6.0

Isoelectric Point (pI)

28.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHquinase_I PF01487 26 - 243 1.9e-68 Type I 3-dehydroquinase
Shikimate_dh_N PF08501 257 - 337 9.9e-25 Shikimate dehydrogenase substrate binding domain
Shikimate_DH PF01488 377 - 448 4.7e-08 Shikimate / quinate 5-dehydrogenase
SDH_C PF18317 497 - 526 1.1e-07 Shikimate 5'-dehydrogenase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016868)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g04660 FvH4_6g04660
rosa_chinensis RchiOBHm_Chr3g0453131
rosa_laevigata RLG00000025535
rosa_multiflora Rmu_co8513087.1_g000001 Rmu_sc0007132.1_g000002 Rmu_sc0013481.1_g000006
rosa_roxburghii Rroxscaffold_6G00430190
rosa_rugosa Rorug02G0646700
rosa_samantha Rh3AG049300 Rh3BG050500 Rh3CG050600 Rh3DG051300
rosa_wichuraiana Rw3G003780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1103
AccIII TCCGGA 1 cut(s) 1309
AciI CCGC 1 cut(s) 267
AclI AACGTT 1 cut(s) 1362
AcsI RAATTY 3 cut(s) 368, 549, 1300
AcuI CTGAAG 2 cut(s) 718, 1575
AfaI GTAC 2 cut(s) 79, 928
AfiI CCNNNNNNNGG 5 cut(s) 89, 587, 641, 1133, 1316
AjnI CCWGG 2 cut(s) 691, 1128
Alw21I GWGCWC 2 cut(s) 667, 1575
Alw26I GTCTC 3 cut(s) 705, 1433, 1460
Alw44I GTGCAC 1 cut(s) 663
AlwNI CAGNNNCTG 2 cut(s) 692, 1553
Aor13HI TCCGGA 1 cut(s) 1309
AoxI GGCC 2 cut(s) 251, 835
ApaLI GTGCAC 1 cut(s) 663
ApeKI GCWGC 5 cut(s) 60, 818, 947, 1193, 1475
ApoI RAATTY 3 cut(s) 368, 549, 1300
Asp700I GAANNNNTTC 1 cut(s) 884
AspS9I GGNCC 2 cut(s) 103, 577
AsuHPI GGTGA 2 cut(s) 293, 1116
AvaII GGWCC 2 cut(s) 103, 577
BaeGI GKGCMC 1 cut(s) 667
BanI GGYRCC 1 cut(s) 1103
BanII GRGCYC 1 cut(s) 1575
Bbv12I GWGCWC 2 cut(s) 667, 1575
BbvI GCAGC 5 cut(s) 72, 830, 959, 1180, 1462
BccI CCATC 6 cut(s) 389, 454, 1019, 1073, 1314, 1430
BciT130I CCWGG 2 cut(s) 693, 1130
BcoDI GTCTC 3 cut(s) 705, 1433, 1460
BfaI CTAG 2 cut(s) 668, 1443
BfmI CTRYAG 1 cut(s) 519
BglII AGATCT 1 cut(s) 199
BisI GCNGC 5 cut(s) 61, 819, 948, 1194, 1476
BlsI GCNGC 5 cut(s) 62, 820, 949, 1195, 1477
Bme1390I CCNGG 2 cut(s) 693, 1130
Bme18I GGWCC 2 cut(s) 103, 577
BmgT120I GGNCC 2 cut(s) 103, 577
BmiI GGNNCC 5 cut(s) 94, 579, 1063, 1105, 1159
BmrFI CCNGG 2 cut(s) 693, 1130
BmrI ACTGGG 1 cut(s) 335
BmsI GCATC 4 cut(s) 111, 292, 908, 1408
BmuI ACTGGG 1 cut(s) 335
BpmI CTGGAG 3 cut(s) 66, 513, 1491
Bpu10I CCTNAGC 1 cut(s) 132
BpuEI CTTGAG 1 cut(s) 374
BsaJI CCNNGG 5 cut(s) 318, 453, 692, 1128, 1245
BsaWI WCCGGW 1 cut(s) 1309
BsaXI ACNNNNNCTCC 6 cut(s) 1046, 1076, 1197, 1227, 1464, 1494
Bsc4I CCNNNNNNNGG 5 cut(s) 89, 587, 641, 1133, 1316
Bse118I RCCGGY 2 cut(s) 674, 1160
Bse1I ACTGG 6 cut(s) 49, 254, 330, 496, 1474, 1543
Bse3DI GCAATG 2 cut(s) 68, 978
BseAI TCCGGA 1 cut(s) 1309
BseBI CCWGG 2 cut(s) 693, 1130
BseDI CCNNGG 5 cut(s) 318, 453, 692, 1128, 1245
BseGI GGATG 6 cut(s) 874, 899, 923, 970, 1306, 1356
BseLI CCNNNNNNNGG 5 cut(s) 89, 587, 641, 1133, 1316
BseMI GCAATG 2 cut(s) 68, 978
BseMII CTCAG 1 cut(s) 47
BseNI ACTGG 6 cut(s) 49, 254, 330, 496, 1474, 1543
BseRI GAGGAG 1 cut(s) 1439
BseSI GKGCMC 1 cut(s) 667
BseXI GCAGC 5 cut(s) 72, 830, 959, 1180, 1462
BsgI GTGCAG 1 cut(s) 1179
BshFI GGCC 2 cut(s) 253, 837
BshNI GGYRCC 1 cut(s) 1103
BsiHKAI GWGCWC 2 cut(s) 667, 1575
BsiSI CCGG 3 cut(s) 675, 1161, 1310
BslFI GGGAC 3 cut(s) 563, 1284, 1504
BslI CCNNNNNNNGG 5 cut(s) 89, 587, 641, 1133, 1316
BsmAI GTCTC 3 cut(s) 705, 1433, 1460
BsmFI GGGAC 3 cut(s) 563, 1284, 1504
BsmI GAATGC 2 cut(s) 568, 821
BsnI GGCC 2 cut(s) 253, 837
Bsp1286I GDGCHC 2 cut(s) 667, 1575
Bsp13I TCCGGA 1 cut(s) 1309
Bsp1407I TGTACA 1 cut(s) 77
Bsp143I GATC 2 cut(s) 28, 199
Bsp19I CCATGG 1 cut(s) 318
BspACI CCGC 1 cut(s) 267
BspANI GGCC 2 cut(s) 253, 837
BspCNI CTCAG 1 cut(s) 48
BspEI TCCGGA 1 cut(s) 1309
BspLI GGNNCC 5 cut(s) 94, 579, 1063, 1105, 1159
BspQI GCTCTTC 1 cut(s) 312
BspT107I GGYRCC 1 cut(s) 1103
BsrDI GCAATG 2 cut(s) 68, 978
BsrFI RCCGGY 2 cut(s) 674, 1160
BsrGI TGTACA 1 cut(s) 77
BsrI ACTGG 6 cut(s) 49, 254, 330, 496, 1474, 1543
BssAI RCCGGY 2 cut(s) 674, 1160
BssECI CCNNGG 5 cut(s) 318, 453, 692, 1128, 1245
BssMI GATC 2 cut(s) 28, 199
BssT1I CCWWGG 2 cut(s) 318, 1245
Bst2UI CCWGG 2 cut(s) 693, 1130
Bst4CI ACNGT 4 cut(s) 100, 173, 565, 1103
Bst6I CTCTTC 2 cut(s) 312, 1308
BstAUI TGTACA 1 cut(s) 77
BstC8I GCNNGC 4 cut(s) 1171, 1254, 1548, 1587
BstDEI CTNAG 4 cut(s) 56, 132, 629, 1408
BstDSI CCRYGG 1 cut(s) 318
BstF5I GGATG 6 cut(s) 874, 899, 923, 970, 1306, 1356
BstKTI GATC 2 cut(s) 31, 202
BstMAI GTCTC 3 cut(s) 705, 1433, 1460
BstMBI GATC 2 cut(s) 28, 199
BstMWI GCNNNNNNNGC 7 cut(s) 494, 521, 671, 686, 1112, 1166, 1556
BstNI CCWGG 2 cut(s) 693, 1130
BstNSI RCATGY 1 cut(s) 1589
BstSCI CCNGG 2 cut(s) 691, 1128
BstSFI CTRYAG 1 cut(s) 519
BstSLI GKGCMC 1 cut(s) 667
BstV1I GCAGC 5 cut(s) 72, 830, 959, 1180, 1462
BstX2I RGATCY 1 cut(s) 199
BstXI CCANNNNNNTGG 3 cut(s) 325, 491, 1252
BstYI RGATCY 1 cut(s) 199
BsuRI GGCC 2 cut(s) 253, 837
BtgI CCRYGG 1 cut(s) 318
BtsCI GGATG 6 cut(s) 874, 899, 923, 970, 1306, 1356
BtsIMutI CAGTG 5 cut(s) 42, 105, 489, 1075, 1536
Cac8I GCNNGC 4 cut(s) 1171, 1254, 1548, 1587
CaiI CAGNNNCTG 2 cut(s) 692, 1553
Cfr10I RCCGGY 2 cut(s) 674, 1160
Cfr13I GGNCC 2 cut(s) 103, 577
Csp6I GTAC 2 cut(s) 78, 927
CspCI CAANNNNNGTGG 2 cut(s) 625, 660
CviAII CATG 5 cut(s) 319, 365, 961, 1576, 1586
CviQI GTAC 2 cut(s) 78, 927
DdeI CTNAG 4 cut(s) 56, 132, 629, 1408
DpnI GATC 2 cut(s) 30, 201
DpnII GATC 2 cut(s) 28, 199
Eam1104I CTCTTC 2 cut(s) 312, 1308
EarI CTCTTC 2 cut(s) 312, 1308
Ecl136II GAGCTC 1 cut(s) 1573
Eco130I CCWWGG 2 cut(s) 318, 1245
Eco24I GRGCYC 1 cut(s) 1575
Eco32I GATATC 2 cut(s) 650, 684
Eco47I GGWCC 2 cut(s) 103, 577
Eco53kI GAGCTC 1 cut(s) 1573
Eco57I CTGAAG 2 cut(s) 718, 1575
EcoICRI GAGCTC 1 cut(s) 1573
EcoO109I RGGNCCY 1 cut(s) 577
EcoRI GAATTC 1 cut(s) 368
EcoRII CCWGG 2 cut(s) 691, 1128
EcoRV GATATC 2 cut(s) 650, 684
EcoT14I CCWWGG 2 cut(s) 318, 1245
EcoT22I ATGCAT 2 cut(s) 962, 1591
EcoT38I GRGCYC 1 cut(s) 1575
ErhI CCWWGG 2 cut(s) 318, 1245
FaeI CATG 5 cut(s) 322, 368, 964, 1579, 1589
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FaqI GGGAC 3 cut(s) 563, 1284, 1504
FatI CATG 5 cut(s) 318, 364, 960, 1575, 1585
FauNDI CATATG 1 cut(s) 1234
Fnu4HI GCNGC 5 cut(s) 61, 819, 948, 1194, 1476
FokI GGATG 6 cut(s) 881, 886, 930, 977, 1293, 1363
FriOI GRGCYC 1 cut(s) 1575
Fsp4HI GCNGC 5 cut(s) 61, 819, 948, 1194, 1476
FspBI CTAG 2 cut(s) 668, 1443
GluI GCNGC 5 cut(s) 61, 819, 948, 1194, 1476
GsuI CTGGAG 3 cut(s) 66, 513, 1491
HaeIII GGCC 2 cut(s) 253, 837
HapII CCGG 3 cut(s) 675, 1161, 1310
Hin1II CATG 5 cut(s) 322, 368, 964, 1579, 1589
HincII GTYRAC 1 cut(s) 907
HindII GTYRAC 1 cut(s) 907
HinfI GANTC 7 cut(s) 223, 480, 799, 974, 1282, 1324, 1446
HpaII CCGG 3 cut(s) 675, 1161, 1310
HphI GGTGA 2 cut(s) 293, 1116
Hpy166II GTNNAC 5 cut(s) 18, 80, 103, 665, 907
Hpy188III TCNNGA 6 cut(s) 556, 621, 915, 1015, 1286, 1310
Hpy8I GTNNAC 5 cut(s) 18, 80, 103, 665, 907
HpyAV CCTTC 3 cut(s) 20, 257, 272
HpyCH4III ACNGT 4 cut(s) 100, 173, 565, 1103
HpyCH4IV ACGT 1 cut(s) 1362
HpyF10VI GCNNNNNNNGC 7 cut(s) 494, 521, 671, 686, 1112, 1166, 1556
HpyF3I CTNAG 4 cut(s) 56, 132, 629, 1408
HpySE526I ACGT 1 cut(s) 1362
Hsp92II CATG 5 cut(s) 322, 368, 964, 1579, 1589
Kpn2I TCCGGA 1 cut(s) 1309
Kzo9I GATC 2 cut(s) 28, 199
LguI GCTCTTC 1 cut(s) 312
LmnI GCTCC 9 cut(s) 329, 494, 694, 995, 1067, 1157, 1205, 1249, 1472
Lsp1109I GCAGC 5 cut(s) 72, 830, 959, 1180, 1462
LweI GCATC 4 cut(s) 111, 292, 908, 1408
MaeI CTAG 2 cut(s) 668, 1443
MaeII ACGT 1 cut(s) 1362
MaeIII GTNAC 3 cut(s) 241, 788, 1176
MalI GATC 2 cut(s) 30, 201
MboI GATC 2 cut(s) 28, 199
MboII GAAGA 8 cut(s) 23, 194, 299, 414, 441, 520, 1301, 1325
MflI RGATCY 1 cut(s) 199
MhlI GDGCHC 2 cut(s) 667, 1575
MluCI AATT 5 cut(s) 138, 368, 376, 549, 1300
MlyI GAGTC 4 cut(s) 232, 808, 1276, 1440
MmeI TCCRAC 2 cut(s) 507, 699
Mph1103I ATGCAT 2 cut(s) 962, 1591
MroI TCCGGA 1 cut(s) 1309
MroXI GAANNNNTTC 1 cut(s) 884
MseI TTAA 2 cut(s) 186, 840
MslI CAYNNNNRTG 2 cut(s) 73, 955
MspI CCGG 3 cut(s) 675, 1161, 1310
MspR9I CCNGG 2 cut(s) 693, 1130
Mva1269I GAATGC 2 cut(s) 568, 821
MvaI CCWGG 2 cut(s) 693, 1130
MwoI GCNNNNNNNGC 7 cut(s) 494, 521, 671, 686, 1112, 1166, 1556
NcoI CCATGG 1 cut(s) 318
NdeI CATATG 1 cut(s) 1234
NdeII GATC 2 cut(s) 28, 199
NlaIII CATG 5 cut(s) 322, 368, 964, 1579, 1589
NlaIV GGNNCC 5 cut(s) 94, 579, 1063, 1105, 1159
NmuCI GTSAC 3 cut(s) 241, 788, 1176
NsiI ATGCAT 2 cut(s) 962, 1591
NspI RCATGY 1 cut(s) 1589
PaeI GCATGC 1 cut(s) 1589
PciSI GCTCTTC 1 cut(s) 312
PctI GAATGC 2 cut(s) 568, 821
PdmI GAANNNNTTC 1 cut(s) 884
PfeI GAWTC 3 cut(s) 480, 974, 1324
PkrI GCNGC 5 cut(s) 62, 820, 949, 1195, 1477
PleI GAGTC 4 cut(s) 231, 807, 1276, 1440
PpsI GAGTC 4 cut(s) 231, 807, 1276, 1440
PpuMI RGGWCCY 1 cut(s) 577
Psp124BI GAGCTC 1 cut(s) 1575
Psp1406I AACGTT 1 cut(s) 1362
Psp5II RGGWCCY 1 cut(s) 577
Psp6I CCWGG 2 cut(s) 691, 1128
PspGI CCWGG 2 cut(s) 691, 1128
PspN4I GGNNCC 5 cut(s) 94, 579, 1063, 1105, 1159
PspPI GGNCC 2 cut(s) 103, 577
PspPPI RGGWCCY 1 cut(s) 577
PstNI CAGNNNCTG 2 cut(s) 692, 1553
PsuI RGATCY 1 cut(s) 199
RsaI GTAC 2 cut(s) 79, 928
RsaNI GTAC 2 cut(s) 78, 927
RseI CAYNNNNRTG 2 cut(s) 73, 955
SacI GAGCTC 1 cut(s) 1575
SapI GCTCTTC 1 cut(s) 312
SaqAI TTAA 2 cut(s) 186, 840
SatI GCNGC 5 cut(s) 61, 819, 948, 1194, 1476
Sau3AI GATC 2 cut(s) 28, 199
Sau96I GGNCC 2 cut(s) 103, 577
SchI GAGTC 4 cut(s) 232, 808, 1276, 1440
ScrFI CCNGG 2 cut(s) 693, 1130
SduI GDGCHC 2 cut(s) 667, 1575
SfaNI GCATC 4 cut(s) 111, 292, 908, 1408
SfcI CTRYAG 1 cut(s) 519
SinI GGWCC 2 cut(s) 103, 577
SmiMI CAYNNNNRTG 2 cut(s) 73, 955
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
SphI GCATGC 1 cut(s) 1589
Sse9I AATT 5 cut(s) 138, 368, 376, 549, 1300
SsiI CCGC 1 cut(s) 267
SspMI CTAG 2 cut(s) 668, 1443
SstI GAGCTC 1 cut(s) 1575
StyD4I CCNGG 2 cut(s) 691, 1128
StyI CCWWGG 2 cut(s) 318, 1245
TaaI ACNGT 4 cut(s) 100, 173, 565, 1103
TaiI ACGT 1 cut(s) 1365
TaqII GACCGA 1 cut(s) 300
TasI AATT 5 cut(s) 138, 368, 376, 549, 1300
TatI WGTACW 1 cut(s) 77
TfiI GAWTC 3 cut(s) 480, 974, 1324
Tru1I TTAA 2 cut(s) 186, 840
Tru9I TTAA 2 cut(s) 186, 840
TscAI CASTG 5 cut(s) 49, 105, 496, 1075, 1543
TseFI GTSAC 3 cut(s) 241, 788, 1176
TseI GCWGC 5 cut(s) 60, 818, 947, 1193, 1475
Tsp45I GTSAC 3 cut(s) 241, 788, 1176
TspDTI ATGAA 9 cut(s) 291, 300, 381, 402, 845, 888, 1112, 1251, 1367
TspGWI ACGGA 1 cut(s) 892
TspRI CASTG 5 cut(s) 49, 105, 496, 1075, 1543
VneI GTGCAC 1 cut(s) 663
VpaK11BI GGWCC 2 cut(s) 103, 577
XapI RAATTY 3 cut(s) 368, 549, 1300
XceI RCATGY 1 cut(s) 1589
XmnI GAANNNNTTC 1 cut(s) 884
XspI CTAG 2 cut(s) 668, 1443
Zsp2I ATGCAT 2 cut(s) 962, 1591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.