Type I 3-dehydroquinase
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g04660 FvH4_6g04660 |
| rosa_chinensis | RchiOBHm_Chr3g0453131 |
| rosa_laevigata | RLG00000025535 |
| rosa_multiflora | Rmu_co8513087.1_g000001 Rmu_sc0007132.1_g000002 Rmu_sc0013481.1_g000006 |
| rosa_roxburghii | Rroxscaffold_6G00430190 |
| rosa_rugosa | Rorug02G0646700 |
| rosa_samantha | Rh3AG049300 Rh3BG050500 Rh3CG050600 Rh3DG051300 |
| rosa_wichuraiana | Rw3G003780 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1016 |
| AccI | GTMKAC | 1 cut(s) | 675 |
| AciI | CCGC | 1 cut(s) | 180 |
| AcsI | RAATTY | 3 cut(s) | 120, 462, 1213 |
| AcuI | CTGAAG | 1 cut(s) | 631 |
| AfaI | GTAC | 1 cut(s) | 841 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 500, 554, 1046, 1228, 1229 |
| AjnI | CCWGG | 3 cut(s) | 604, 1041, 1459 |
| Alw21I | GWGCWC | 1 cut(s) | 580 |
| Alw26I | GTCTC | 3 cut(s) | 618, 1346, 1373 |
| Alw44I | GTGCAC | 1 cut(s) | 576 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 605 |
| AoxI | GGCC | 2 cut(s) | 164, 748 |
| ApaLI | GTGCAC | 1 cut(s) | 576 |
| ApeKI | GCWGC | 3 cut(s) | 731, 860, 1106 |
| ApoI | RAATTY | 3 cut(s) | 120, 462, 1213 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 797 |
| AspS9I | GGNCC | 2 cut(s) | 16, 490 |
| AsuC2I | CCSGG | 2 cut(s) | 1223, 1367 |
| AsuHPI | GGTGA | 1 cut(s) | 1029 |
| AvaII | GGWCC | 2 cut(s) | 16, 490 |
| BaeGI | GKGCMC | 1 cut(s) | 580 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 657, 690 |
| BanI | GGYRCC | 1 cut(s) | 1016 |
| Bbv12I | GWGCWC | 1 cut(s) | 580 |
| BbvI | GCAGC | 3 cut(s) | 743, 872, 1093 |
| BccI | CCATC | 4 cut(s) | 302, 367, 932, 986 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 610, 644 |
| BciT130I | CCWGG | 3 cut(s) | 606, 1043, 1461 |
| BclI | TGATCA | 1 cut(s) | 1416 |
| BcnI | CCSGG | 2 cut(s) | 1223, 1367 |
| BcoDI | GTCTC | 3 cut(s) | 618, 1346, 1373 |
| BfaI | CTAG | 3 cut(s) | 390, 581, 1356 |
| BglII | AGATCT | 1 cut(s) | 112 |
| BisI | GCNGC | 3 cut(s) | 732, 861, 1107 |
| BlsI | GCNGC | 3 cut(s) | 733, 862, 1108 |
| Bme1390I | CCNGG | 5 cut(s) | 606, 1043, 1223, 1367, 1461 |
| Bme18I | GGWCC | 2 cut(s) | 16, 490 |
| BmgT120I | GGNCC | 2 cut(s) | 16, 490 |
| BmiI | GGNNCC | 5 cut(s) | 7, 492, 976, 1018, 1072 |
| BmrFI | CCNGG | 5 cut(s) | 606, 1043, 1223, 1367, 1461 |
| BmsI | GCATC | 4 cut(s) | 24, 205, 821, 1321 |
| BpmI | CTGGAG | 3 cut(s) | 287, 426, 1404 |
| Bpu10I | CCTNAGC | 2 cut(s) | 45, 1158 |
| BpuMI | CCSGG | 2 cut(s) | 1223, 1367 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1415 |
| BsaJI | CCNNGG | 3 cut(s) | 366, 605, 1041 |
| BsaWI | WCCGGW | 1 cut(s) | 1140 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 959, 989, 1110, 1140, 1377, 1407 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 500, 554, 1046, 1228, 1229 |
| Bse118I | RCCGGY | 2 cut(s) | 587, 1073 |
| Bse1I | ACTGG | 4 cut(s) | 167, 409, 1387, 1456 |
| Bse3DI | GCAATG | 2 cut(s) | 237, 891 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1415 |
| BseBI | CCWGG | 3 cut(s) | 606, 1043, 1461 |
| BseDI | CCNNGG | 3 cut(s) | 366, 605, 1041 |
| BseGI | GGATG | 5 cut(s) | 359, 787, 812, 836, 883 |
| BseJI | GATNNNNATC | 1 cut(s) | 1415 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 500, 554, 1046, 1228, 1229 |
| BseMI | GCAATG | 2 cut(s) | 237, 891 |
| BseMII | CTCAG | 1 cut(s) | 840 |
| BseNI | ACTGG | 4 cut(s) | 167, 409, 1387, 1456 |
| BseRI | GAGGAG | 1 cut(s) | 1352 |
| BseSI | GKGCMC | 1 cut(s) | 580 |
| BseXI | GCAGC | 3 cut(s) | 743, 872, 1093 |
| BsgI | GTGCAG | 1 cut(s) | 1092 |
| BshFI | GGCC | 2 cut(s) | 166, 750 |
| BshNI | GGYRCC | 1 cut(s) | 1016 |
| BsiHKAI | GWGCWC | 1 cut(s) | 580 |
| BsiSI | CCGG | 5 cut(s) | 588, 1074, 1141, 1223, 1366 |
| BslFI | GGGAC | 2 cut(s) | 476, 1417 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 500, 554, 1046, 1228, 1229 |
| BsmAI | GTCTC | 3 cut(s) | 618, 1346, 1373 |
| BsmFI | GGGAC | 2 cut(s) | 476, 1417 |
| BsmI | GAATGC | 2 cut(s) | 481, 734 |
| BsnI | GGCC | 2 cut(s) | 166, 750 |
| Bsp1286I | GDGCHC | 1 cut(s) | 580 |
| Bsp143I | GATC | 3 cut(s) | 72, 112, 1416 |
| BspACI | CCGC | 1 cut(s) | 180 |
| BspANI | GGCC | 2 cut(s) | 166, 750 |
| BspCNI | CTCAG | 1 cut(s) | 839 |
| BspLI | GGNNCC | 5 cut(s) | 7, 492, 976, 1018, 1072 |
| BspQI | GCTCTTC | 1 cut(s) | 225 |
| BspT107I | GGYRCC | 1 cut(s) | 1016 |
| BsrDI | GCAATG | 2 cut(s) | 237, 891 |
| BsrFI | RCCGGY | 2 cut(s) | 587, 1073 |
| BsrI | ACTGG | 4 cut(s) | 167, 409, 1387, 1456 |
| BssAI | RCCGGY | 2 cut(s) | 587, 1073 |
| BssECI | CCNNGG | 3 cut(s) | 366, 605, 1041 |
| BssMI | GATC | 3 cut(s) | 72, 112, 1416 |
| BssNAI | GTATAC | 1 cut(s) | 676 |
| Bst1107I | GTATAC | 1 cut(s) | 676 |
| Bst2UI | CCWGG | 3 cut(s) | 606, 1043, 1461 |
| Bst4CI | ACNGT | 4 cut(s) | 13, 86, 478, 1016 |
| Bst6I | CTCTTC | 2 cut(s) | 225, 1221 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 434 |
| BstC8I | GCNNGC | 3 cut(s) | 1084, 1167, 1302 |
| BstDEI | CTNAG | 5 cut(s) | 45, 542, 826, 1158, 1321 |
| BstF5I | GGATG | 5 cut(s) | 359, 787, 812, 836, 883 |
| BstKTI | GATC | 3 cut(s) | 75, 115, 1419 |
| BstMAI | GTCTC | 3 cut(s) | 618, 1346, 1373 |
| BstMBI | GATC | 3 cut(s) | 72, 112, 1416 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 407, 434, 584, 599, 1025, 1079 |
| BstNI | CCWGG | 3 cut(s) | 606, 1043, 1461 |
| BstSCI | CCNGG | 5 cut(s) | 604, 1041, 1221, 1365, 1459 |
| BstSLI | GKGCMC | 1 cut(s) | 580 |
| BstV1I | GCAGC | 3 cut(s) | 743, 872, 1093 |
| BstX2I | RGATCY | 1 cut(s) | 112 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 404 |
| BstYI | RGATCY | 1 cut(s) | 112 |
| BstZ17I | GTATAC | 1 cut(s) | 676 |
| BsuRI | GGCC | 2 cut(s) | 166, 750 |
| BtgZI | GCGATG | 1 cut(s) | 210 |
| BtsCI | GGATG | 5 cut(s) | 359, 787, 812, 836, 883 |
| BtsIMutI | CAGTG | 3 cut(s) | 18, 988, 1449 |
| Cac8I | GCNNGC | 3 cut(s) | 1084, 1167, 1302 |
| CaiI | CAGNNNCTG | 1 cut(s) | 605 |
| Cfr10I | RCCGGY | 2 cut(s) | 587, 1073 |
| Cfr13I | GGNCC | 2 cut(s) | 16, 490 |
| Csp6I | GTAC | 1 cut(s) | 840 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 538, 573 |
| CviAII | CATG | 2 cut(s) | 278, 874 |
| CviQI | GTAC | 1 cut(s) | 840 |
| DdeI | CTNAG | 5 cut(s) | 45, 542, 826, 1158, 1321 |
| DpnI | GATC | 3 cut(s) | 74, 114, 1418 |
| DpnII | GATC | 3 cut(s) | 72, 112, 1416 |
| Eam1104I | CTCTTC | 2 cut(s) | 225, 1221 |
| EarI | CTCTTC | 2 cut(s) | 225, 1221 |
| Eco32I | GATATC | 1 cut(s) | 563 |
| Eco47I | GGWCC | 2 cut(s) | 16, 490 |
| Eco57I | CTGAAG | 1 cut(s) | 631 |
| EcoO109I | RGGNCCY | 1 cut(s) | 490 |
| EcoRII | CCWGG | 3 cut(s) | 604, 1041, 1459 |
| EcoRV | GATATC | 1 cut(s) | 563 |
| EcoT22I | ATGCAT | 1 cut(s) | 875 |
| FaeI | CATG | 2 cut(s) | 281, 877 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 204, 236 |
| FaqI | GGGAC | 2 cut(s) | 476, 1417 |
| FatI | CATG | 2 cut(s) | 277, 873 |
| FauNDI | CATATG | 1 cut(s) | 1147 |
| FbaI | TGATCA | 1 cut(s) | 1416 |
| FblI | GTMKAC | 1 cut(s) | 675 |
| Fnu4HI | GCNGC | 3 cut(s) | 732, 861, 1107 |
| FokI | GGATG | 5 cut(s) | 346, 794, 799, 843, 890 |
| Fsp4HI | GCNGC | 3 cut(s) | 732, 861, 1107 |
| FspBI | CTAG | 3 cut(s) | 390, 581, 1356 |
| GluI | GCNGC | 3 cut(s) | 732, 861, 1107 |
| GsuI | CTGGAG | 3 cut(s) | 287, 426, 1404 |
| HaeIII | GGCC | 2 cut(s) | 166, 750 |
| HapII | CCGG | 5 cut(s) | 588, 1074, 1141, 1223, 1366 |
| Hin1II | CATG | 2 cut(s) | 281, 877 |
| HinfI | GANTC | 8 cut(s) | 136, 393, 651, 712, 887, 1195, 1237, 1359 |
| HpaII | CCGG | 5 cut(s) | 588, 1074, 1141, 1223, 1366 |
| HphI | GGTGA | 1 cut(s) | 1029 |
| Hpy166II | GTNNAC | 4 cut(s) | 16, 578, 676, 1466 |
| Hpy188I | TCNGA | 6 cut(s) | 61, 112, 367, 377, 650, 1308 |
| Hpy188III | TCNNGA | 6 cut(s) | 469, 534, 790, 828, 928, 1199 |
| Hpy8I | GTNNAC | 4 cut(s) | 16, 578, 676, 1466 |
| HpyAV | CCTTC | 2 cut(s) | 170, 185 |
| HpyCH4III | ACNGT | 4 cut(s) | 13, 86, 478, 1016 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 407, 434, 584, 599, 1025, 1079 |
| HpyF3I | CTNAG | 5 cut(s) | 45, 542, 826, 1158, 1321 |
| Hsp92II | CATG | 2 cut(s) | 281, 877 |
| Ksp22I | TGATCA | 1 cut(s) | 1416 |
| Kzo9I | GATC | 3 cut(s) | 72, 112, 1416 |
| LguI | GCTCTTC | 1 cut(s) | 225 |
| LmnI | GCTCC | 9 cut(s) | 242, 407, 607, 908, 980, 1070, 1118, 1162, 1385 |
| Lsp1109I | GCAGC | 3 cut(s) | 743, 872, 1093 |
| LweI | GCATC | 4 cut(s) | 24, 205, 821, 1321 |
| MaeI | CTAG | 3 cut(s) | 390, 581, 1356 |
| MaeIII | GTNAC | 3 cut(s) | 154, 701, 1089 |
| MalI | GATC | 3 cut(s) | 74, 114, 1418 |
| MboI | GATC | 3 cut(s) | 72, 112, 1416 |
| MboII | GAAGA | 5 cut(s) | 107, 212, 327, 1214, 1238 |
| MflI | RGATCY | 1 cut(s) | 112 |
| MhlI | GDGCHC | 1 cut(s) | 580 |
| MlyI | GAGTC | 5 cut(s) | 145, 645, 721, 1189, 1353 |
| Mph1103I | ATGCAT | 1 cut(s) | 875 |
| MroXI | GAANNNNTTC | 1 cut(s) | 797 |
| MseI | TTAA | 4 cut(s) | 99, 753, 1479, 1492 |
| MslI | CAYNNNNRTG | 1 cut(s) | 868 |
| MspI | CCGG | 5 cut(s) | 588, 1074, 1141, 1223, 1366 |
| MspR9I | CCNGG | 5 cut(s) | 606, 1043, 1223, 1367, 1461 |
| Mva1269I | GAATGC | 2 cut(s) | 481, 734 |
| MvaI | CCWGG | 3 cut(s) | 606, 1043, 1461 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 407, 434, 584, 599, 1025, 1079 |
| NciI | CCSGG | 2 cut(s) | 1223, 1367 |
| NdeI | CATATG | 1 cut(s) | 1147 |
| NdeII | GATC | 3 cut(s) | 72, 112, 1416 |
| NlaIII | CATG | 2 cut(s) | 281, 877 |
| NlaIV | GGNNCC | 5 cut(s) | 7, 492, 976, 1018, 1072 |
| NmuCI | GTSAC | 3 cut(s) | 154, 701, 1089 |
| NsiI | ATGCAT | 1 cut(s) | 875 |
| PciSI | GCTCTTC | 1 cut(s) | 225 |
| PctI | GAATGC | 2 cut(s) | 481, 734 |
| PdmI | GAANNNNTTC | 1 cut(s) | 797 |
| PfeI | GAWTC | 3 cut(s) | 393, 887, 1237 |
| PfoI | TCCNGGA | 1 cut(s) | 1365 |
| PkrI | GCNGC | 3 cut(s) | 733, 862, 1108 |
| PleI | GAGTC | 5 cut(s) | 144, 645, 720, 1189, 1353 |
| PpsI | GAGTC | 5 cut(s) | 144, 645, 720, 1189, 1353 |
| PpuMI | RGGWCCY | 1 cut(s) | 490 |
| Psp5II | RGGWCCY | 1 cut(s) | 490 |
| Psp6I | CCWGG | 3 cut(s) | 604, 1041, 1459 |
| PspGI | CCWGG | 3 cut(s) | 604, 1041, 1459 |
| PspN4I | GGNNCC | 5 cut(s) | 7, 492, 976, 1018, 1072 |
| PspPI | GGNCC | 2 cut(s) | 16, 490 |
| PspPPI | RGGWCCY | 1 cut(s) | 490 |
| PstNI | CAGNNNCTG | 1 cut(s) | 605 |
| PsuI | RGATCY | 1 cut(s) | 112 |
| RsaI | GTAC | 1 cut(s) | 841 |
| RsaNI | GTAC | 1 cut(s) | 840 |
| RseI | CAYNNNNRTG | 1 cut(s) | 868 |
| SapI | GCTCTTC | 1 cut(s) | 225 |
| SaqAI | TTAA | 4 cut(s) | 99, 753, 1479, 1492 |
| SatI | GCNGC | 3 cut(s) | 732, 861, 1107 |
| Sau3AI | GATC | 3 cut(s) | 72, 112, 1416 |
| Sau96I | GGNCC | 2 cut(s) | 16, 490 |
| SchI | GAGTC | 5 cut(s) | 145, 645, 721, 1189, 1353 |
| ScrFI | CCNGG | 5 cut(s) | 606, 1043, 1223, 1367, 1461 |
| SduI | GDGCHC | 1 cut(s) | 580 |
| SfaNI | GCATC | 4 cut(s) | 24, 205, 821, 1321 |
| SinI | GGWCC | 2 cut(s) | 16, 490 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 868 |
| SsiI | CCGC | 1 cut(s) | 180 |
| SspMI | CTAG | 3 cut(s) | 390, 581, 1356 |
| StyD4I | CCNGG | 5 cut(s) | 604, 1041, 1221, 1365, 1459 |
| TaaI | ACNGT | 4 cut(s) | 13, 86, 478, 1016 |
| TaqI | TCGA | 2 cut(s) | 789, 1329 |
| TaqII | GACCGA | 1 cut(s) | 213 |
| TatI | WGTACW | 1 cut(s) | 839 |
| TfiI | GAWTC | 3 cut(s) | 393, 887, 1237 |
| Tru1I | TTAA | 4 cut(s) | 99, 753, 1479, 1492 |
| Tru9I | TTAA | 4 cut(s) | 99, 753, 1479, 1492 |
| TscAI | CASTG | 3 cut(s) | 18, 988, 1456 |
| TseFI | GTSAC | 3 cut(s) | 154, 701, 1089 |
| TseI | GCWGC | 3 cut(s) | 731, 860, 1106 |
| Tsp45I | GTSAC | 3 cut(s) | 154, 701, 1089 |
| TspDTI | ATGAA | 7 cut(s) | 204, 213, 315, 758, 801, 1164, 1280 |
| TspGWI | ACGGA | 2 cut(s) | 805, 1011 |
| TspRI | CASTG | 3 cut(s) | 18, 988, 1456 |
| VneI | GTGCAC | 1 cut(s) | 576 |
| VpaK11BI | GGWCC | 2 cut(s) | 16, 490 |
| XapI | RAATTY | 3 cut(s) | 120, 462, 1213 |
| XmiI | GTMKAC | 1 cut(s) | 675 |
| XmnI | GAANNNNTTC | 1 cut(s) | 797 |
| XspI | CTAG | 3 cut(s) | 390, 581, 1356 |
| Zsp2I | ATGCAT | 1 cut(s) | 875 |