Rmu_co8513087.1_g000001

Type I 3-dehydroquinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8513087.1
OG0016868
Physical Location & Seq
Reverse (-)
457 .. 3197
2741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8513087.1_g000001.1.cds

Sequence Viewer

Length: 1593 bp
atgggaagccttccgtttactacctctgatcttcacacaagcaccggcggacttgtgagcagcccgacattgctatgtacacccctaatgggaaccacagtggaccaaatgctgattgagatgcacaaggctaaggaaattggttctgatattgtggagatcaggcttgactgtttgagaaactttaacccaagttcagatcttcaaattcttatcaagcagagtcctctgcctactcttgtcacttacaggccagtttgggaaggcggtcaatatgaaggcgatgaaaccaagcgacaagatgctcttcggtcagcaatggaattgggagctaactatattgatattgagcttgaggttgcccatgacttcaacaattctatctatgaaaagaagcctgacaacttcaaagtcattgtttcttctcacaactttcacaacactccatcctccgaggcaatcggaaatcttgtggctagaatccaagccactggagctgacattgtgaaaattgcaactactgcattagacattacagattgtgccagaattttccagattaccgtgcattcacaggtcccaacaataggtattgttatgggagagagaggtttgatttcacgactacttagccccaagtttggtggatttcttacctatggtgcactagaagccggtgctatatcagctcctgggcaaccaactgcgagagacttgctggatttatacaacttcagactcattagacctgataccaaagtatatgggattattgggaagcctgttggtcacagcaagagtcctctactattcaatgcagcattcaagtcagttggccttaatgcagtttatgttcattttctggtggatgatgtcgagaagtttttcaacacatattcatccgttgatttttcgggatgcagttgtactattccacataaggaggcagcactcaaatgcatggatgagattgattccattgccaagaaaattggagctatcaacaacattgtcaggaagcctgatgggaggttagttgctttcaacaccgactacattggctccatcagtggcattgaggacggactacgaggtttgaacggcgccattcctgctggtaaatcacccctggctggaaagttgtttgtggtcttgggagccggcggtgctggcaagtcacttgtgtatggtgctgcacagaaaggagcaagagttgtatgtgccaaccggacatatgaaagagctaaggagctggctgacaaagttgggggaaaagctatgactcttgaagaagttgaaaatttccacccagaagagggaatgattcttgccaacactacatctgtgggaatgaagcctaatgttgatgatacccctatctccaagcaagctctgaaacactattgcttagtttttgatgctatctatacacccaaagagactagactcctccgggaagcaaaagagactggagcagaggttgtatatggtacagagatgttgatcaggcaagggtttgaacaatacaagaacttcactggtttgccagcacctgaagaattgtttagggagctcatggagaagcatgcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230
Pfam Domains
Protein Families
DHquinase_I Shikimate_DH Shikimate_dh_N

Protein Analysis

530

Amino Acids

57.62

Weight (kDa)

6.0

Isoelectric Point (pI)

28.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016868)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g04660 FvH4_6g04660
rosa_chinensis RchiOBHm_Chr3g0453131
rosa_laevigata RLG00000025535
rosa_multiflora Rmu_co8513087.1_g000001 Rmu_sc0007132.1_g000002 Rmu_sc0013481.1_g000006
rosa_roxburghii Rroxscaffold_6G00430190
rosa_rugosa Rorug02G0646700
rosa_samantha Rh3AG049300 Rh3BG050500 Rh3CG050600 Rh3DG051300
rosa_wichuraiana Rw3G003780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1103
AciI CCGC 3 cut(s) 48, 267, 1164
AcsI RAATTY 3 cut(s) 207, 549, 1300
AcuI CTGAAG 2 cut(s) 718, 1575
AcyI GRCGYC 1 cut(s) 1104
AfaI GTAC 3 cut(s) 79, 928, 1492
AfiI CCNNNNNNNGG 6 cut(s) 89, 587, 641, 1133, 1315, 1316
AjnI CCWGG 2 cut(s) 691, 1128
Alw21I GWGCWC 2 cut(s) 667, 1575
Alw26I GTCTC 3 cut(s) 705, 1433, 1460
Alw44I GTGCAC 1 cut(s) 663
AlwNI CAGNNNCTG 2 cut(s) 692, 1553
AoxI GGCC 2 cut(s) 251, 835
ApaLI GTGCAC 1 cut(s) 663
ApeKI GCWGC 4 cut(s) 60, 818, 947, 1193
ApoI RAATTY 3 cut(s) 207, 549, 1300
Asp700I GAANNNNTTC 1 cut(s) 884
AspLEI GCGC 1 cut(s) 1106
AspS9I GGNCC 2 cut(s) 103, 577
AsuC2I CCSGG 1 cut(s) 1454
AsuHPI GGTGA 1 cut(s) 1116
AvaII GGWCC 2 cut(s) 103, 577
BaeGI GKGCMC 1 cut(s) 667
BaeI ACNNNNGTAYC 2 cut(s) 744, 777
BanI GGYRCC 1 cut(s) 1103
BanII GRGCYC 1 cut(s) 1575
Bbv12I GWGCWC 2 cut(s) 667, 1575
BbvI GCAGC 4 cut(s) 72, 830, 959, 1180
BccI CCATC 3 cut(s) 454, 1019, 1073
BceAI ACGGC 1 cut(s) 1117
BcgI CGANNNNNNTGC 2 cut(s) 697, 731
BciT130I CCWGG 2 cut(s) 693, 1130
BclI TGATCA 1 cut(s) 1503
BcnI CCSGG 1 cut(s) 1454
BcoDI GTCTC 3 cut(s) 705, 1433, 1460
BfaI CTAG 3 cut(s) 477, 668, 1443
BfoI RGCGCY 1 cut(s) 1107
BglII AGATCT 1 cut(s) 199
BisI GCNGC 4 cut(s) 61, 819, 948, 1194
BlsI GCNGC 4 cut(s) 62, 820, 949, 1195
Bme1390I CCNGG 3 cut(s) 693, 1130, 1454
Bme18I GGWCC 2 cut(s) 103, 577
BmgT120I GGNCC 2 cut(s) 103, 577
BmiI GGNNCC 5 cut(s) 94, 579, 1063, 1105, 1159
BmrFI CCNGG 3 cut(s) 693, 1130, 1454
BmsI GCATC 4 cut(s) 111, 292, 908, 1408
BpmI CTGGAG 2 cut(s) 513, 1491
Bpu10I CCTNAGC 2 cut(s) 132, 1245
BpuEI CTTGAG 1 cut(s) 374
BpuMI CCSGG 1 cut(s) 1454
BsaBI GATNNNNATC 1 cut(s) 1502
BsaHI GRCGYC 1 cut(s) 1104
BsaJI CCNNGG 3 cut(s) 453, 692, 1128
BsaWI WCCGGW 1 cut(s) 1227
BsaXI ACNNNNNCTCC 6 cut(s) 1046, 1076, 1197, 1227, 1464, 1494
Bsc4I CCNNNNNNNGG 6 cut(s) 89, 587, 641, 1133, 1315, 1316
Bse118I RCCGGY 3 cut(s) 44, 674, 1160
Bse1I ACTGG 4 cut(s) 254, 496, 1474, 1543
Bse3DI GCAATG 3 cut(s) 68, 324, 978
Bse8I GATNNNNATC 1 cut(s) 1502
BseBI CCWGG 2 cut(s) 693, 1130
BseDI CCNNGG 3 cut(s) 453, 692, 1128
BseGI GGATG 5 cut(s) 446, 874, 899, 923, 970
BseJI GATNNNNATC 1 cut(s) 1502
BseLI CCNNNNNNNGG 6 cut(s) 89, 587, 641, 1133, 1315, 1316
BseMI GCAATG 3 cut(s) 68, 324, 978
BseNI ACTGG 4 cut(s) 254, 496, 1474, 1543
BseRI GAGGAG 1 cut(s) 1439
BseSI GKGCMC 1 cut(s) 667
BseXI GCAGC 4 cut(s) 72, 830, 959, 1180
BsgI GTGCAG 1 cut(s) 1179
BshFI GGCC 2 cut(s) 253, 837
BshNI GGYRCC 1 cut(s) 1103
BsiHKAI GWGCWC 2 cut(s) 667, 1575
BsiSI CCGG 5 cut(s) 45, 675, 1161, 1228, 1453
BslFI GGGAC 1 cut(s) 563
BslI CCNNNNNNNGG 6 cut(s) 89, 587, 641, 1133, 1315, 1316
BsmAI GTCTC 3 cut(s) 705, 1433, 1460
BsmFI GGGAC 1 cut(s) 563
BsmI GAATGC 2 cut(s) 568, 821
BsnI GGCC 2 cut(s) 253, 837
Bsp1286I GDGCHC 2 cut(s) 667, 1575
Bsp1407I TGTACA 1 cut(s) 77
Bsp143I GATC 4 cut(s) 28, 159, 199, 1503
BspACI CCGC 3 cut(s) 48, 267, 1164
BspANI GGCC 2 cut(s) 253, 837
BspLI GGNNCC 5 cut(s) 94, 579, 1063, 1105, 1159
BspQI GCTCTTC 1 cut(s) 312
BspT107I GGYRCC 1 cut(s) 1103
BsrDI GCAATG 3 cut(s) 68, 324, 978
BsrFI RCCGGY 3 cut(s) 44, 674, 1160
BsrGI TGTACA 1 cut(s) 77
BsrI ACTGG 4 cut(s) 254, 496, 1474, 1543
BssAI RCCGGY 3 cut(s) 44, 674, 1160
BssECI CCNNGG 3 cut(s) 453, 692, 1128
BssMI GATC 4 cut(s) 28, 159, 199, 1503
BssNI GRCGYC 1 cut(s) 1104
Bst2UI CCWGG 2 cut(s) 693, 1130
Bst4CI ACNGT 3 cut(s) 100, 173, 565
Bst6I CTCTTC 2 cut(s) 312, 1308
BstACI GRCGYC 1 cut(s) 1104
BstAPI GCANNNNNTGC 1 cut(s) 521
BstAUI TGTACA 1 cut(s) 77
BstC8I GCNNGC 6 cut(s) 1162, 1171, 1254, 1389, 1548, 1587
BstDEI CTNAG 4 cut(s) 132, 629, 1245, 1408
BstF5I GGATG 5 cut(s) 446, 874, 899, 923, 970
BstH2I RGCGCY 1 cut(s) 1107
BstHHI GCGC 1 cut(s) 1106
BstKTI GATC 4 cut(s) 31, 162, 202, 1506
BstMAI GTCTC 3 cut(s) 705, 1433, 1460
BstMBI GATC 4 cut(s) 28, 159, 199, 1503
BstMWI GCNNNNNNNGC 7 cut(s) 494, 521, 671, 686, 1112, 1166, 1170
BstNI CCWGG 2 cut(s) 693, 1130
BstNSI RCATGY 1 cut(s) 1589
BstSCI CCNGG 3 cut(s) 691, 1128, 1452
BstSLI GKGCMC 1 cut(s) 667
BstV1I GCAGC 4 cut(s) 72, 830, 959, 1180
BstX2I RGATCY 1 cut(s) 199
BstXI CCANNNNNNTGG 1 cut(s) 491
BstYI RGATCY 1 cut(s) 199
BsuRI GGCC 2 cut(s) 253, 837
BtgZI GCGATG 1 cut(s) 297
BtsCI GGATG 5 cut(s) 446, 874, 899, 923, 970
BtsIMutI CAGTG 4 cut(s) 105, 489, 1075, 1536
Cac8I GCNNGC 6 cut(s) 1162, 1171, 1254, 1389, 1548, 1587
CaiI CAGNNNCTG 2 cut(s) 692, 1553
CfoI GCGC 1 cut(s) 1106
Cfr10I RCCGGY 3 cut(s) 44, 674, 1160
Cfr13I GGNCC 2 cut(s) 103, 577
Csp6I GTAC 3 cut(s) 78, 927, 1491
CspCI CAANNNNNGTGG 2 cut(s) 625, 660
CviAII CATG 4 cut(s) 365, 961, 1576, 1586
CviQI GTAC 3 cut(s) 78, 927, 1491
DdeI CTNAG 4 cut(s) 132, 629, 1245, 1408
DinI GGCGCC 1 cut(s) 1105
DpnI GATC 4 cut(s) 30, 161, 201, 1505
DpnII GATC 4 cut(s) 28, 159, 199, 1503
Eam1104I CTCTTC 2 cut(s) 312, 1308
EarI CTCTTC 2 cut(s) 312, 1308
EciI GGCGGA 1 cut(s) 63
Ecl136II GAGCTC 1 cut(s) 1573
Eco24I GRGCYC 1 cut(s) 1575
Eco47I GGWCC 2 cut(s) 103, 577
Eco53kI GAGCTC 1 cut(s) 1573
Eco57I CTGAAG 2 cut(s) 718, 1575
EcoICRI GAGCTC 1 cut(s) 1573
EcoO109I RGGNCCY 1 cut(s) 577
EcoRII CCWGG 2 cut(s) 691, 1128
EcoT22I ATGCAT 2 cut(s) 962, 1591
EcoT38I GRGCYC 1 cut(s) 1575
EgeI GGCGCC 1 cut(s) 1105
EheI GGCGCC 1 cut(s) 1105
FaeI CATG 4 cut(s) 368, 964, 1579, 1589
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FaqI GGGAC 1 cut(s) 563
FatI CATG 4 cut(s) 364, 960, 1575, 1585
FauNDI CATATG 1 cut(s) 1234
FbaI TGATCA 1 cut(s) 1503
Fnu4HI GCNGC 4 cut(s) 61, 819, 948, 1194
FokI GGATG 5 cut(s) 433, 881, 886, 930, 977
FriOI GRGCYC 1 cut(s) 1575
Fsp4HI GCNGC 4 cut(s) 61, 819, 948, 1194
FspBI CTAG 3 cut(s) 477, 668, 1443
GlaI GCGC 1 cut(s) 1105
GluI GCNGC 4 cut(s) 61, 819, 948, 1194
GsuI CTGGAG 2 cut(s) 513, 1491
HaeII RGCGCY 1 cut(s) 1107
HaeIII GGCC 2 cut(s) 253, 837
HapII CCGG 5 cut(s) 45, 675, 1161, 1228, 1453
HhaI GCGC 1 cut(s) 1106
Hin1I GRCGYC 1 cut(s) 1104
Hin1II CATG 4 cut(s) 368, 964, 1579, 1589
Hin6I GCGC 1 cut(s) 1104
HinP1I GCGC 1 cut(s) 1104
HinfI GANTC 8 cut(s) 223, 480, 738, 799, 974, 1282, 1324, 1446
HpaII CCGG 5 cut(s) 45, 675, 1161, 1228, 1453
HphI GGTGA 1 cut(s) 1116
Hpy166II GTNNAC 4 cut(s) 18, 80, 103, 665
Hpy188I TCNGA 7 cut(s) 28, 148, 199, 454, 464, 737, 1395
Hpy188III TCNNGA 6 cut(s) 556, 621, 877, 915, 1015, 1286
Hpy8I GTNNAC 4 cut(s) 18, 80, 103, 665
HpyAV CCTTC 3 cut(s) 20, 257, 272
HpyCH4III ACNGT 3 cut(s) 100, 173, 565
HpyF10VI GCNNNNNNNGC 7 cut(s) 494, 521, 671, 686, 1112, 1166, 1170
HpyF3I CTNAG 4 cut(s) 132, 629, 1245, 1408
Hsp92I GRCGYC 1 cut(s) 1104
Hsp92II CATG 4 cut(s) 368, 964, 1579, 1589
HspAI GCGC 1 cut(s) 1104
KasI GGCGCC 1 cut(s) 1103
KroI GCCGGC 1 cut(s) 1160
KroNI GCCGGC 1 cut(s) 1162
Ksp22I TGATCA 1 cut(s) 1503
Kzo9I GATC 4 cut(s) 28, 159, 199, 1503
LguI GCTCTTC 1 cut(s) 312
Lsp1109I GCAGC 4 cut(s) 72, 830, 959, 1180
LweI GCATC 4 cut(s) 111, 292, 908, 1408
MaeI CTAG 3 cut(s) 477, 668, 1443
MaeIII GTNAC 3 cut(s) 241, 788, 1176
MalI GATC 4 cut(s) 30, 161, 201, 1505
MboI GATC 4 cut(s) 28, 159, 199, 1503
MboII GAAGA 7 cut(s) 23, 194, 299, 414, 1301, 1325, 1568
MflI RGATCY 1 cut(s) 199
MhlI GDGCHC 2 cut(s) 667, 1575
MluCI AATT 9 cut(s) 138, 207, 323, 376, 510, 549, 990, 1300, 1559
Mly113I GGCGCC 1 cut(s) 1104
MlyI GAGTC 5 cut(s) 232, 732, 808, 1276, 1440
Mph1103I ATGCAT 2 cut(s) 962, 1591
MroNI GCCGGC 1 cut(s) 1160
MroXI GAANNNNTTC 1 cut(s) 884
MseI TTAA 2 cut(s) 186, 840
MslI CAYNNNNRTG 2 cut(s) 73, 955
MspI CCGG 5 cut(s) 45, 675, 1161, 1228, 1453
MspR9I CCNGG 3 cut(s) 693, 1130, 1454
Mva1269I GAATGC 2 cut(s) 568, 821
MvaI CCWGG 2 cut(s) 693, 1130
MwoI GCNNNNNNNGC 7 cut(s) 494, 521, 671, 686, 1112, 1166, 1170
NaeI GCCGGC 1 cut(s) 1162
NarI GGCGCC 1 cut(s) 1104
NciI CCSGG 1 cut(s) 1454
NdeI CATATG 1 cut(s) 1234
NdeII GATC 4 cut(s) 28, 159, 199, 1503
NgoMIV GCCGGC 1 cut(s) 1160
NlaIII CATG 4 cut(s) 368, 964, 1579, 1589
NlaIV GGNNCC 5 cut(s) 94, 579, 1063, 1105, 1159
NmuCI GTSAC 3 cut(s) 241, 788, 1176
NsiI ATGCAT 2 cut(s) 962, 1591
NspI RCATGY 1 cut(s) 1589
PaeI GCATGC 1 cut(s) 1589
PciSI GCTCTTC 1 cut(s) 312
PctI GAATGC 2 cut(s) 568, 821
PdiI GCCGGC 1 cut(s) 1162
PdmI GAANNNNTTC 1 cut(s) 884
PfeI GAWTC 3 cut(s) 480, 974, 1324
PfoI TCCNGGA 1 cut(s) 1452
PkrI GCNGC 4 cut(s) 62, 820, 949, 1195
PleI GAGTC 5 cut(s) 231, 732, 807, 1276, 1440
PluTI GGCGCC 1 cut(s) 1107
PpsI GAGTC 5 cut(s) 231, 732, 807, 1276, 1440
PpuMI RGGWCCY 1 cut(s) 577
Psp124BI GAGCTC 1 cut(s) 1575
Psp5II RGGWCCY 1 cut(s) 577
Psp6I CCWGG 2 cut(s) 691, 1128
PspGI CCWGG 2 cut(s) 691, 1128
PspN4I GGNNCC 5 cut(s) 94, 579, 1063, 1105, 1159
PspPI GGNCC 2 cut(s) 103, 577
PspPPI RGGWCCY 1 cut(s) 577
PstNI CAGNNNCTG 2 cut(s) 692, 1553
PsuI RGATCY 1 cut(s) 199
RsaI GTAC 3 cut(s) 79, 928, 1492
RsaNI GTAC 3 cut(s) 78, 927, 1491
RseI CAYNNNNRTG 2 cut(s) 73, 955
SacI GAGCTC 1 cut(s) 1575
SapI GCTCTTC 1 cut(s) 312
SaqAI TTAA 2 cut(s) 186, 840
SatI GCNGC 4 cut(s) 61, 819, 948, 1194
Sau3AI GATC 4 cut(s) 28, 159, 199, 1503
Sau96I GGNCC 2 cut(s) 103, 577
SchI GAGTC 5 cut(s) 232, 732, 808, 1276, 1440
ScrFI CCNGG 3 cut(s) 693, 1130, 1454
SduI GDGCHC 2 cut(s) 667, 1575
SfaNI GCATC 4 cut(s) 111, 292, 908, 1408
SfoI GGCGCC 1 cut(s) 1105
SgrAI CRCCGGYG 1 cut(s) 44
SinI GGWCC 2 cut(s) 103, 577
SmiMI CAYNNNNRTG 2 cut(s) 73, 955
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
SphI GCATGC 1 cut(s) 1589
Sse9I AATT 9 cut(s) 138, 207, 323, 376, 510, 549, 990, 1300, 1559
SsiI CCGC 3 cut(s) 48, 267, 1164
SspDI GGCGCC 1 cut(s) 1103
SspMI CTAG 3 cut(s) 477, 668, 1443
SstI GAGCTC 1 cut(s) 1575
StyD4I CCNGG 3 cut(s) 691, 1128, 1452
TaaI ACNGT 3 cut(s) 100, 173, 565
TaqI TCGA 1 cut(s) 876
TaqII GACCGA 1 cut(s) 300
TasI AATT 9 cut(s) 138, 207, 323, 376, 510, 549, 990, 1300, 1559
TatI WGTACW 2 cut(s) 77, 926
TfiI GAWTC 3 cut(s) 480, 974, 1324
Tru1I TTAA 2 cut(s) 186, 840
Tru9I TTAA 2 cut(s) 186, 840
TscAI CASTG 4 cut(s) 105, 496, 1075, 1543
TseFI GTSAC 3 cut(s) 241, 788, 1176
TseI GCWGC 4 cut(s) 60, 818, 947, 1193
Tsp45I GTSAC 3 cut(s) 241, 788, 1176
TspDTI ATGAA 7 cut(s) 291, 300, 402, 845, 888, 1251, 1367
TspGWI ACGGA 2 cut(s) 892, 1098
TspRI CASTG 4 cut(s) 105, 496, 1075, 1543
VneI GTGCAC 1 cut(s) 663
VpaK11BI GGWCC 2 cut(s) 103, 577
XapI RAATTY 3 cut(s) 207, 549, 1300
XceI RCATGY 1 cut(s) 1589
XmnI GAANNNNTTC 1 cut(s) 884
XspI CTAG 3 cut(s) 477, 668, 1443
Zsp2I ATGCAT 2 cut(s) 962, 1591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.