FvH4_6g18520

YLS9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016885
Physical Location & Seq
Forward (+)
12267080 .. 12267818
739 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g18520.t1

Sequence Viewer

Length: 576 bp
ATGTTTTGTAAGTTATGCGTCTGTTGTTGCATCGTCCCTATTGTGATATTCGGTATTACCGGGGTTACATTTGGTTTAGTGATGTCGAAATGGATGAACAAAGACGACTATGCCGGACCGGTATACACAGTGGATGATGCCGTGCTGAACAAGTTTTCCGTCACGTCCAACAAGACCCTCGAATACGAACTAGCCTTGACTCTGAATGCTGAGAATAAGTTTTTTGCTAATACTGAAATGAAGTGGGAAGTGTTTGAAACTGTTCCTGTATATGAGAATAATGAATTGGGTAATAAGGTTGATTTGGCCCCGTTTGAGATAAAGAAGACCGCCAAGAAGGAACTCAAACCAACGTACAAGGGGGAGACAAAGACGTCTGTTGATGCTTCAAAGGTGAAGAACGCTAAGCTCGTCGACATTGTTTTGAAGCTTAGGGCCAAGAGATCGGGCAAAACCGTTTATTTGTTCAAGGTTCAAAACGACTTCGCTTACGAGTGCAACTTGAAAGTTCCTACCAAATCGGGTGGTGGAAATTTCGAATGTACCAAGTGTGAAAGAAAGAAAGAAATAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

192

Amino Acids

21.5

Weight (kDa)

8.9

Isoelectric Point (pI)

24.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016885)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18520
malus_domestica MD12G1035000.v1.1
prunus_persica Prupe.7G112100_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0473081
rosa_laevigata RLG00000024030
rosa_multiflora Rmu_sc0006336.1_g000002 Rmu_sc0006336.1_g000003
rosa_roxburghii Rroxscaffold_6G00408330
rosa_rugosa Rorug03G0131400
rosa_samantha Rh3AG182800 Rh3BG209300 Rh3CG206300 Rh3DG206300
rosa_wichuraiana Rw3G016020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 373
AatII GACGTC 1 cut(s) 377
AccI GTMKAC 2 cut(s) 123, 414
AciI CCGC 1 cut(s) 330
AcsI RAATTY 1 cut(s) 532
AcyI GRCGYC 1 cut(s) 374
AfaI GTAC 2 cut(s) 356, 544
AgeI ACCGGT 1 cut(s) 118
AgsI TTSAA 6 cut(s) 257, 390, 427, 469, 476, 505
AjiI CACGTC 1 cut(s) 165
AjuI GAANNNNNNNTTGG 2 cut(s) 269, 301
AloI GAACNNNNNNTCC 2 cut(s) 140, 172
AluBI AGCT 3 cut(s) 409, 430, 572
AluI AGCT 3 cut(s) 409, 430, 572
Alw26I GTCTC 1 cut(s) 359
AoxI GGCC 2 cut(s) 306, 435
ApoI RAATTY 1 cut(s) 532
AsiGI ACCGGT 1 cut(s) 118
Asp700I GAANNNNTTC 1 cut(s) 261
AspS9I GGNCC 3 cut(s) 116, 307, 435
AsuC2I CCSGG 1 cut(s) 61
AsuHPI GGTGA 1 cut(s) 406
AsuII TTCGAA 1 cut(s) 537
AvaII GGWCC 1 cut(s) 116
BbsI GAAGAC 1 cut(s) 332
BceAI ACGGC 1 cut(s) 125
BcnI CCSGG 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 359
BfaI CTAG 1 cut(s) 191
BlpI GCTNAGC 1 cut(s) 405
Bme1390I CCNGG 1 cut(s) 61
Bme18I GGWCC 1 cut(s) 116
BmgBI CACGTC 1 cut(s) 165
BmgT120I GGNCC 3 cut(s) 116, 307, 435
BmiI GGNNCC 1 cut(s) 309
BmrFI CCNGG 1 cut(s) 61
BmsI GCATC 3 cut(s) 39, 127, 373
BpiI GAAGAC 1 cut(s) 332
Bpu10I CCTNAGC 1 cut(s) 431
Bpu1102I GCTNAGC 1 cut(s) 405
Bpu14I TTCGAA 1 cut(s) 537
BpuMI CCSGG 1 cut(s) 61
BsaHI GRCGYC 1 cut(s) 374
BsaJI CCNNGG 1 cut(s) 60
BsaWI WCCGGW 1 cut(s) 118
Bse118I RCCGGY 1 cut(s) 118
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 2 cut(s) 99, 139
BseMII CTCAG 1 cut(s) 201
BshFI GGCC 2 cut(s) 308, 437
BshTI ACCGGT 1 cut(s) 118
BsiSI CCGG 3 cut(s) 60, 114, 119
BslFI GGGAC 1 cut(s) 20
BsmAI GTCTC 1 cut(s) 359
BsmFI GGGAC 1 cut(s) 20
BsmI GAATGC 1 cut(s) 211
BsnI GGCC 2 cut(s) 308, 437
Bsp119I TTCGAA 1 cut(s) 537
Bsp143I GATC 1 cut(s) 443
Bsp1720I GCTNAGC 1 cut(s) 405
BspACI CCGC 1 cut(s) 330
BspANI GGCC 2 cut(s) 308, 437
BspCNI CTCAG 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 309
BspT104I TTCGAA 1 cut(s) 537
BsrFI RCCGGY 1 cut(s) 118
BssAI RCCGGY 1 cut(s) 118
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 1 cut(s) 443
BssNAI GTATAC 1 cut(s) 124
BssNI GRCGYC 1 cut(s) 374
Bst1107I GTATAC 1 cut(s) 124
Bst4CI ACNGT 3 cut(s) 130, 262, 457
BstACI GRCGYC 1 cut(s) 374
BstBI TTCGAA 1 cut(s) 537
BstDEI CTNAG 4 cut(s) 210, 405, 431, 573
BstF5I GGATG 2 cut(s) 99, 139
BstKTI GATC 1 cut(s) 446
BstMAI GTCTC 1 cut(s) 359
BstMBI GATC 1 cut(s) 443
BstSCI CCNGG 1 cut(s) 59
BstV2I GAAGAC 1 cut(s) 332
BstZ17I GTATAC 1 cut(s) 124
BsuRI GGCC 2 cut(s) 308, 437
BtrI CACGTC 1 cut(s) 165
BtsCI GGATG 2 cut(s) 99, 139
BtsIMutI CAGTG 1 cut(s) 135
Cfr10I RCCGGY 1 cut(s) 118
Cfr13I GGNCC 3 cut(s) 116, 307, 435
CpoI CGGWCCG 1 cut(s) 116
CseI GACGC 1 cut(s) 7
Csp6I GTAC 2 cut(s) 355, 543
CspAI ACCGGT 1 cut(s) 118
CspCI CAANNNNNGTGG 2 cut(s) 505, 540
CspI CGGWCCG 1 cut(s) 116
CviJI RGCY 6 cut(s) 194, 308, 409, 430, 437, 572
CviKI_1 RGCY 6 cut(s) 194, 308, 409, 430, 437, 572
CviQI GTAC 2 cut(s) 355, 543
DdeI CTNAG 4 cut(s) 210, 405, 431, 573
DpnI GATC 1 cut(s) 445
DpnII GATC 1 cut(s) 443
DrdI GACNNNNNNGTC 1 cut(s) 373
DseDI GACNNNNNNGTC 1 cut(s) 373
Eco47I GGWCC 1 cut(s) 116
FaiI YATR 5 cut(s) 16, 111, 124, 271, 273
FaqI GGGAC 1 cut(s) 20
FblI GTMKAC 2 cut(s) 123, 414
FokI GGATG 2 cut(s) 106, 146
FspBI CTAG 1 cut(s) 191
HaeIII GGCC 2 cut(s) 308, 437
HapII CCGG 3 cut(s) 60, 114, 119
HgaI GACGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 374
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HindIII AAGCTT 1 cut(s) 428
HinfI GANTC 1 cut(s) 199
HpaII CCGG 3 cut(s) 60, 114, 119
HphI GGTGA 1 cut(s) 406
Hpy166II GTNNAC 2 cut(s) 124, 415
Hpy188I TCNGA 1 cut(s) 204
Hpy8I GTNNAC 2 cut(s) 124, 415
Hpy99I CGWCG 1 cut(s) 416
HpyAV CCTTC 1 cut(s) 331
HpyCH4III ACNGT 3 cut(s) 130, 262, 457
HpyCH4IV ACGT 3 cut(s) 164, 353, 374
HpyCH4V TGCA 2 cut(s) 30, 498
HpyF3I CTNAG 4 cut(s) 210, 405, 431, 573
HpySE526I ACGT 3 cut(s) 164, 353, 374
Hsp92I GRCGYC 1 cut(s) 374
Kzo9I GATC 1 cut(s) 443
LpnPI CCDG 4 cut(s) 73, 127, 132, 279
LweI GCATC 3 cut(s) 39, 127, 373
MaeI CTAG 1 cut(s) 191
MaeII ACGT 3 cut(s) 164, 353, 374
MaeIII GTNAC 2 cut(s) 64, 160
MalI GATC 1 cut(s) 445
MboI GATC 1 cut(s) 443
MboII GAAGA 2 cut(s) 337, 409
MluCI AATT 2 cut(s) 284, 532
MlyI GAGTC 1 cut(s) 193
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 1 cut(s) 188
MroXI GAANNNNTTC 1 cut(s) 261
MspI CCGG 3 cut(s) 60, 114, 119
MspR9I CCNGG 1 cut(s) 61
Mva1269I GAATGC 1 cut(s) 211
NciI CCSGG 1 cut(s) 61
NdeII GATC 1 cut(s) 443
NlaIV GGNNCC 1 cut(s) 309
NmuCI GTSAC 1 cut(s) 160
NspV TTCGAA 1 cut(s) 537
PcsI WCGNNNNNNNCGW 1 cut(s) 408
PctI GAATGC 1 cut(s) 211
PdmI GAANNNNTTC 1 cut(s) 261
PinAI ACCGGT 1 cut(s) 118
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
PspN4I GGNNCC 1 cut(s) 309
PspPI GGNCC 3 cut(s) 116, 307, 435
RsaI GTAC 2 cut(s) 356, 544
RsaNI GTAC 2 cut(s) 355, 543
Rsr2I CGGWCCG 1 cut(s) 116
RsrII CGGWCCG 1 cut(s) 116
SalI GTCGAC 1 cut(s) 413
Sau3AI GATC 1 cut(s) 443
Sau96I GGNCC 3 cut(s) 116, 307, 435
SchI GAGTC 1 cut(s) 193
ScrFI CCNGG 1 cut(s) 61
SetI ASST 9 cut(s) 167, 300, 356, 377, 396, 411, 432, 474, 574
SfaNI GCATC 3 cut(s) 39, 127, 373
SfuI TTCGAA 1 cut(s) 537
SinI GGWCC 1 cut(s) 116
Sse9I AATT 2 cut(s) 284, 532
SsiI CCGC 1 cut(s) 330
SspMI CTAG 1 cut(s) 191
StyD4I CCNGG 1 cut(s) 59
TaaI ACNGT 3 cut(s) 130, 262, 457
TaiI ACGT 3 cut(s) 167, 356, 377
TaqI TCGA 4 cut(s) 86, 180, 414, 537
TasI AATT 2 cut(s) 284, 532
TscAI CASTG 1 cut(s) 135
TseFI GTSAC 1 cut(s) 160
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 3 cut(s) 110, 254, 297
TspGWI ACGGA 1 cut(s) 148
TspRI CASTG 1 cut(s) 135
VpaK11BI GGWCC 1 cut(s) 116
XapI RAATTY 1 cut(s) 532
XmiI GTMKAC 2 cut(s) 123, 414
XmnI GAANNNNTTC 1 cut(s) 261
XspI CTAG 1 cut(s) 191
ZraI GACGTC 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.