Prupe.7G112100_v2.0.a1

YLS9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0016885
Physical Location & Seq
Reverse (-)
13857971 .. 13859597
1627 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G112100.1

Sequence Viewer

Length: 600 bp
ATGAGTTCGAAAAAATGTTGCTGTTGCTGCTGCCTCCTCCTCTTATTATTTTTCATCGTGGGCCTGATTGTTCTTTTCGTGCTTAAAGAAAAATTAGGGCCGTCGTTAGAAGCGCGCTACAAGGTGACGGATGCCTCATTGAGCCAGTTTAGCATGGGGTCTGGCAACAACCTAGAATACAATCTAGCCGCCAACATGAGTGTTGAAAATCCTAACAAATATTCTGACTACAGATATGAAAAATTTATAGCTGTTCCCTCTTACGGTGACGAGGATTTAAATGAAGTTTCTTTGAGCTCATTTGAAGTAGCGAAGAAGAACACATCTGCATTGACACCTCTAGTGTTCAAAGGGCAGAAATCGGTGTCTCTTAAGGGCGATGCAGCGTCCAACCTTAAGAGTGGTTCGGTTTTCGAAATCGTTTTGAAGCTCAAGATTAAGGTTATGAGCAGAGCTGGTAAGGTTGAAATTTACAACGAGTACAAGGAAGAATGCAAATTGAAGGTTCCTTTGTTGAATTCCAAGGAAAAAGCTTCTGAAAAATTTGAGAGTACAGATTGCAAAAAGGTTGGAAGCACTAGTTCGGGGATAAAGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

200

Amino Acids

21.92

Weight (kDa)

8.9

Isoelectric Point (pI)

19.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016885)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18520
malus_domestica MD12G1035000.v1.1
prunus_persica Prupe.7G112100_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0473081
rosa_laevigata RLG00000024030
rosa_multiflora Rmu_sc0006336.1_g000002 Rmu_sc0006336.1_g000003
rosa_roxburghii Rroxscaffold_6G00408330
rosa_rugosa Rorug03G0131400
rosa_samantha Rh3AG182800 Rh3BG209300 Rh3CG206300 Rh3DG206300
rosa_wichuraiana Rw3G016020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 115
AciI CCGC 1 cut(s) 189
AcsI RAATTY 4 cut(s) 242, 468, 517, 542
AfaI GTAC 2 cut(s) 482, 553
AfiI CCNNNNNNNGG 1 cut(s) 263
AflII CTTAAG 2 cut(s) 371, 395
AgsI TTSAA 7 cut(s) 206, 305, 349, 427, 467, 502, 517
AhlI ACTAGT 1 cut(s) 578
AluBI AGCT 5 cut(s) 251, 297, 430, 455, 533
AluI AGCT 5 cut(s) 251, 297, 430, 455, 533
Alw21I GWGCWC 1 cut(s) 299
Alw26I GTCTC 1 cut(s) 372
AoxI GGCC 2 cut(s) 61, 98
ApeKI GCWGC 3 cut(s) 27, 30, 383
ApoI RAATTY 4 cut(s) 242, 468, 517, 542
AspLEI GCGC 2 cut(s) 115, 117
AspS9I GGNCC 2 cut(s) 61, 98
AsuHPI GGTGA 2 cut(s) 136, 278
AsuII TTCGAA 2 cut(s) 8, 414
BanII GRGCYC 1 cut(s) 299
Bbv12I GWGCWC 1 cut(s) 299
BbvI GCAGC 3 cut(s) 14, 17, 395
BceAI ACGGC 1 cut(s) 85
BcoDI GTCTC 1 cut(s) 372
BcuI ACTAGT 1 cut(s) 578
BfaI CTAG 4 cut(s) 173, 185, 341, 579
BfmI CTRYAG 1 cut(s) 229
BfrI CTTAAG 2 cut(s) 371, 395
BisI GCNGC 4 cut(s) 28, 31, 189, 384
BlsI GCNGC 4 cut(s) 29, 32, 190, 385
BmgT120I GGNCC 2 cut(s) 61, 98
BmiI GGNNCC 1 cut(s) 507
BmsI GCATC 2 cut(s) 121, 370
Bpu14I TTCGAA 2 cut(s) 8, 414
BpuEI CTTGAG 1 cut(s) 416
BsaJI CCNNGG 1 cut(s) 522
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse1I ACTGG 1 cut(s) 145
BseDI CCNNGG 1 cut(s) 522
BseGI GGATG 1 cut(s) 136
BseLI CCNNNNNNNGG 1 cut(s) 263
BseNI ACTGG 1 cut(s) 145
BsePI GCGCGC 1 cut(s) 113
BseRI GAGGAG 2 cut(s) 26, 29
BseXI GCAGC 3 cut(s) 14, 17, 395
Bsh1236I CGCG 1 cut(s) 115
BshFI GGCC 2 cut(s) 63, 100
BsiHKAI GWGCWC 1 cut(s) 299
BslI CCNNNNNNNGG 1 cut(s) 263
BsmAI GTCTC 1 cut(s) 372
BsmI GAATGC 1 cut(s) 497
BsnI GGCC 2 cut(s) 63, 100
Bsp119I TTCGAA 2 cut(s) 8, 414
Bsp1286I GDGCHC 1 cut(s) 299
BspACI CCGC 1 cut(s) 189
BspANI GGCC 2 cut(s) 63, 100
BspFNI CGCG 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 507
BspT104I TTCGAA 2 cut(s) 8, 414
BspTI CTTAAG 2 cut(s) 371, 395
BsrI ACTGG 1 cut(s) 145
BssECI CCNNGG 1 cut(s) 522
BssHII GCGCGC 1 cut(s) 113
BssT1I CCWWGG 1 cut(s) 522
Bst4CI ACNGT 1 cut(s) 266
BstAFI CTTAAG 2 cut(s) 371, 395
BstBI TTCGAA 2 cut(s) 8, 414
BstC8I GCNNGC 1 cut(s) 115
BstF5I GGATG 1 cut(s) 136
BstFNI CGCG 1 cut(s) 115
BstHHI GCGC 2 cut(s) 115, 117
BstMAI GTCTC 1 cut(s) 372
BstMWI GCNNNNNNNGC 2 cut(s) 27, 150
BstSFI CTRYAG 1 cut(s) 229
BstUI CGCG 1 cut(s) 115
BstV1I GCAGC 3 cut(s) 14, 17, 395
BsuRI GGCC 2 cut(s) 63, 100
BtgZI GCGATG 1 cut(s) 393
BtsCI GGATG 1 cut(s) 136
Cac8I GCNNGC 1 cut(s) 115
CfoI GCGC 2 cut(s) 115, 117
Cfr13I GGNCC 2 cut(s) 61, 98
CseI GACGC 1 cut(s) 375
Csp6I GTAC 2 cut(s) 481, 552
CviAII CATG 2 cut(s) 154, 196
CviJI RGCY 9 cut(s) 63, 100, 144, 188, 251, 297, 430, 455, 533
CviKI_1 RGCY 9 cut(s) 63, 100, 144, 188, 251, 297, 430, 455, 533
CviQI GTAC 2 cut(s) 481, 552
DraI TTTAAA 1 cut(s) 279
Ecl136II GAGCTC 1 cut(s) 297
Eco130I CCWWGG 1 cut(s) 522
Eco24I GRGCYC 1 cut(s) 299
Eco53kI GAGCTC 1 cut(s) 297
EcoICRI GAGCTC 1 cut(s) 297
EcoRI GAATTC 1 cut(s) 517
EcoT14I CCWWGG 1 cut(s) 522
EcoT38I GRGCYC 1 cut(s) 299
ErhI CCWWGG 1 cut(s) 522
FaeI CATG 2 cut(s) 157, 199
FaiI YATR 5 cut(s) 155, 197, 237, 248, 446
FatI CATG 2 cut(s) 153, 195
Fnu4HI GCNGC 4 cut(s) 28, 31, 189, 384
FokI GGATG 1 cut(s) 143
FriOI GRGCYC 1 cut(s) 299
Fsp4HI GCNGC 4 cut(s) 28, 31, 189, 384
FspBI CTAG 4 cut(s) 173, 185, 341, 579
GlaI GCGC 2 cut(s) 114, 116
GluI GCNGC 4 cut(s) 28, 31, 189, 384
HaeIII GGCC 2 cut(s) 63, 100
HgaI GACGC 1 cut(s) 375
HhaI GCGC 2 cut(s) 115, 117
Hin1II CATG 2 cut(s) 157, 199
Hin6I GCGC 2 cut(s) 113, 115
HinP1I GCGC 2 cut(s) 113, 115
HindIII AAGCTT 1 cut(s) 531
HphI GGTGA 2 cut(s) 136, 278
Hpy188I TCNGA 2 cut(s) 226, 538
Hpy188III TCNNGA 1 cut(s) 433
Hpy99I CGWCG 1 cut(s) 106
HpyAV CCTTC 1 cut(s) 496
HpyCH4III ACNGT 1 cut(s) 266
HpyCH4V TGCA 4 cut(s) 329, 383, 495, 561
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 150
Hsp92II CATG 2 cut(s) 157, 199
HspAI GCGC 2 cut(s) 113, 115
LpnPI CCDG 4 cut(s) 77, 147, 158, 441
Lsp1109I GCAGC 3 cut(s) 14, 17, 395
LweI GCATC 2 cut(s) 121, 370
MaeI CTAG 4 cut(s) 173, 185, 341, 579
MaeIII GTNAC 2 cut(s) 124, 266
MboII GAAGA 3 cut(s) 325, 328, 500
MhlI GDGCHC 1 cut(s) 299
MluCI AATT 6 cut(s) 92, 242, 468, 497, 517, 542
MmeI TCCRAC 2 cut(s) 414, 550
MnlI CCTC 7 cut(s) 44, 47, 50, 145, 265, 268, 348
MseI TTAA 5 cut(s) 84, 278, 372, 396, 438
MspCI CTTAAG 2 cut(s) 371, 395
Mva1269I GAATGC 1 cut(s) 497
MvnI CGCG 1 cut(s) 115
MwoI GCNNNNNNNGC 2 cut(s) 27, 150
NlaIII CATG 2 cut(s) 157, 199
NlaIV GGNNCC 1 cut(s) 507
NmuCI GTSAC 2 cut(s) 124, 266
NspV TTCGAA 2 cut(s) 8, 414
PauI GCGCGC 1 cut(s) 113
PctI GAATGC 1 cut(s) 497
PkrI GCNGC 4 cut(s) 29, 32, 190, 385
Psp124BI GAGCTC 1 cut(s) 299
PspN4I GGNNCC 1 cut(s) 507
PspPI GGNCC 2 cut(s) 61, 98
PteI GCGCGC 1 cut(s) 113
RsaI GTAC 2 cut(s) 482, 553
RsaNI GTAC 2 cut(s) 481, 552
SacI GAGCTC 1 cut(s) 299
SaqAI TTAA 5 cut(s) 84, 278, 372, 396, 438
SatI GCNGC 4 cut(s) 28, 31, 189, 384
Sau96I GGNCC 2 cut(s) 61, 98
SduI GDGCHC 1 cut(s) 299
SfaNI GCATC 2 cut(s) 121, 370
SfcI CTRYAG 1 cut(s) 229
SfuI TTCGAA 2 cut(s) 8, 414
SmiI ATTTAAAT 1 cut(s) 279
SmlI CTYRAG 3 cut(s) 371, 395, 431
SmoI CTYRAG 3 cut(s) 371, 395, 431
SpeI ACTAGT 1 cut(s) 578
Sse9I AATT 6 cut(s) 92, 242, 468, 497, 517, 542
SsiI CCGC 1 cut(s) 189
SspI AATATT 1 cut(s) 221
SspMI CTAG 4 cut(s) 173, 185, 341, 579
SstI GAGCTC 1 cut(s) 299
StyI CCWWGG 1 cut(s) 522
SwaI ATTTAAAT 1 cut(s) 279
TaaI ACNGT 1 cut(s) 266
TaqI TCGA 2 cut(s) 8, 414
TasI AATT 6 cut(s) 92, 242, 468, 497, 517, 542
TatI WGTACW 2 cut(s) 480, 551
TauI GCSGC 1 cut(s) 191
Tru1I TTAA 5 cut(s) 84, 278, 372, 396, 438
Tru9I TTAA 5 cut(s) 84, 278, 372, 396, 438
TseFI GTSAC 2 cut(s) 124, 266
TseI GCWGC 3 cut(s) 27, 30, 383
Tsp45I GTSAC 2 cut(s) 124, 266
TspDTI ATGAA 3 cut(s) 43, 252, 297
TspGWI ACGGA 1 cut(s) 143
Vha464I CTTAAG 2 cut(s) 371, 395
XapI RAATTY 4 cut(s) 242, 468, 517, 542
XspI CTAG 4 cut(s) 173, 185, 341, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.