FvH4_6g18950

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
12533707 .. 12536803
3097 bp
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UTR
Exon/CDS
Intron
FvH4_6g18950.t1

Sequence Viewer

Length: 903 bp
ATGTCAAGTAGTTCCTGCAAATGCATTAAGGATTTGCGTCTTTATGAGGTTAGTGCAGATAACATTACCATCCAAAGCTCATCTTTGGAATCATTCAGTTATGTGGTTCATGCTTACAGCATCCTCTGCAACCTTAGCATCTCTGGTGAGAAACTTGCTCATATACATATAGAGTGGGGATTTTACAAGCCACGAAGCAGGTCTTTATACATCTCTGCCCCAAATCTTAAAACTTTGAAATGGTTTGGAAGAGTGTTGAATCACCAAGAACTGGGGGAATTAGTGTGCTTAGAAAAAGCTGAGATTCTTCTGGAGCATAAGGAAGAATACAAATTTGACAATGTATCTGAGATTCTTGGCAGTATATCCAGGACTAAAGCTCTTACTCTCCTTGAAGAAACTGTGAAGGTACTGCTCAGCGAAAGATCCATGCCTTCTACCTTGAATAATGTTTCTTTCTTGACTTTGCACGTCGGGTGCTTGAATGATGGCATAGTTCCTGAAATGGTCTCTCTGCTAAGTGGAATGTCTAATTTGAATACTTTGCACATAAGCACACACCCTTCCTTCTTCCTTGATAAACCAGAGGCGTGCGGATTTAATAAGAAATTTTGGGAGTCTCAGAACCTCGCTTTCATTTATCAGCTTAACGAGGTAAAAATAGAGCTTTGTCATGGGAGTAACACAGTAGAATTCGTCTTCTACATTCTCGAGCATGCTCAAAATTTGCAGAAAATGGTGATATATTATTTGCCCCACCAATCCAATCTTCAACAGAGGGTAAAGAAATGCAAGATGGCTTCTGCTCCAACTATCATCTTCCAGAAAAAAGTGGGTGAAGCAAAATTATGCAGGCTTGATGCGTGTAGGTATCTAACTGTATTGAGAAATGACCGACTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

301

Amino Acids

34.26

Weight (kDa)

8.26

Isoelectric Point (pI)

59.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020338)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18950
malus_domestica MD04G1145800.v1.1
pyrus_communis pycom07g14440
rosa_samantha Rh3AG187400 Rh3BG215900 Rh3DG212000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 189
AccB7I CCANNNNNTGG 1 cut(s) 271
AciI CCGC 1 cut(s) 594
AclWI GGATC 1 cut(s) 420
AcsI RAATTY 4 cut(s) 332, 608, 692, 724
AfaI GTAC 1 cut(s) 411
AfiI CCNNNNNNNGG 1 cut(s) 271
AgsI TTSAA 7 cut(s) 238, 259, 395, 445, 484, 538, 773
AjiI CACGTC 1 cut(s) 472
AjnI CCWGG 1 cut(s) 368
AjuI GAANNNNNNNTTGG 2 cut(s) 753, 785
AluBI AGCT 5 cut(s) 78, 299, 380, 646, 667
AluI AGCT 5 cut(s) 78, 299, 380, 646, 667
Alw26I GTCTC 2 cut(s) 514, 624
AlwI GGATC 1 cut(s) 420
Ama87I CYCGRG 1 cut(s) 710
ApoI RAATTY 4 cut(s) 332, 608, 692, 724
AsuHPI GGTGA 4 cut(s) 158, 254, 751, 848
AvaI CYCGRG 1 cut(s) 710
BbsI GAAGAC 1 cut(s) 691
BccI CCATC 3 cut(s) 77, 482, 790
BciT130I CCWGG 1 cut(s) 370
BcoDI GTCTC 2 cut(s) 514, 624
BfmI CTRYAG 1 cut(s) 899
BfuAI ACCTGC 1 cut(s) 189
BlpI GCTNAGC 1 cut(s) 416
Bme1390I CCNGG 1 cut(s) 370
BmeT110I CYCGRG 1 cut(s) 710
BmgBI CACGTC 1 cut(s) 472
BmrFI CCNGG 1 cut(s) 370
BmrI ACTGGG 1 cut(s) 281
BmsI GCATC 3 cut(s) 129, 147, 850
BmuI ACTGGG 1 cut(s) 281
BpiI GAAGAC 1 cut(s) 691
BpmI CTGGAG 1 cut(s) 332
Bpu10I CCTNAGC 1 cut(s) 134
Bpu1102I GCTNAGC 1 cut(s) 416
BsaI GGTCTC 1 cut(s) 514
Bsc4I CCNNNNNNNGG 1 cut(s) 271
Bse1I ACTGG 1 cut(s) 276
BseBI CCWGG 1 cut(s) 370
BseGI GGATG 2 cut(s) 69, 120
BseLI CCNNNNNNNGG 1 cut(s) 271
BseMII CTCAG 4 cut(s) 291, 339, 430, 635
BseNI ACTGG 1 cut(s) 276
BsgI GTGCAG 1 cut(s) 75
BsiHKCI CYCGRG 1 cut(s) 710
BslI CCNNNNNNNGG 1 cut(s) 271
BsmAI GTCTC 2 cut(s) 514, 624
Bso31I GGTCTC 1 cut(s) 514
BsoBI CYCGRG 1 cut(s) 710
Bsp143I GATC 1 cut(s) 425
Bsp1720I GCTNAGC 1 cut(s) 416
BspACI CCGC 1 cut(s) 594
BspCNI CTCAG 4 cut(s) 292, 340, 429, 634
BspMI ACCTGC 1 cut(s) 189
BspPI GGATC 1 cut(s) 420
BspTNI GGTCTC 1 cut(s) 514
BsrI ACTGG 1 cut(s) 276
BssMI GATC 1 cut(s) 425
Bst2UI CCWGG 1 cut(s) 370
Bst4CI ACNGT 4 cut(s) 403, 688, 880, 900
Bst6I CTCTTC 1 cut(s) 244
BstAPI GCANNNNNTGC 1 cut(s) 126
BstC8I GCNNGC 3 cut(s) 592, 717, 854
BstDEI CTNAG 7 cut(s) 134, 289, 300, 348, 416, 518, 621
BstF5I GGATG 2 cut(s) 69, 120
BstKTI GATC 1 cut(s) 428
BstMAI GTCTC 2 cut(s) 514, 624
BstMBI GATC 1 cut(s) 425
BstMWI GCNNNNNNNGC 2 cut(s) 126, 135
BstNI CCWGG 1 cut(s) 370
BstNSI RCATGY 1 cut(s) 719
BstSCI CCNGG 1 cut(s) 368
BstSFI CTRYAG 1 cut(s) 899
BstV2I GAAGAC 1 cut(s) 691
BstX2I RGATCY 1 cut(s) 425
BstYI RGATCY 1 cut(s) 425
BtrI CACGTC 1 cut(s) 472
BtsCI GGATG 2 cut(s) 69, 120
BveI ACCTGC 1 cut(s) 189
Cac8I GCNNGC 3 cut(s) 592, 717, 854
CseI GACGC 1 cut(s) 26
Csp6I GTAC 1 cut(s) 410
CviAII CATG 4 cut(s) 110, 430, 674, 716
CviJI RGCY 8 cut(s) 78, 190, 299, 380, 646, 667, 800, 856
CviKI_1 RGCY 8 cut(s) 78, 190, 299, 380, 646, 667, 800, 856
CviQI GTAC 1 cut(s) 410
DdeI CTNAG 7 cut(s) 134, 289, 300, 348, 416, 518, 621
DpnI GATC 1 cut(s) 427
DpnII GATC 1 cut(s) 425
Eam1104I CTCTTC 1 cut(s) 244
EarI CTCTTC 1 cut(s) 244
Eco31I GGTCTC 1 cut(s) 514
Eco88I CYCGRG 1 cut(s) 710
EcoRI GAATTC 1 cut(s) 692
EcoRII CCWGG 1 cut(s) 368
EcoT22I ATGCAT 1 cut(s) 26
FaeI CATG 4 cut(s) 113, 433, 677, 719
FalI AAGNNNNNCTT 4 cut(s) 67, 99, 187, 219
FatI CATG 4 cut(s) 109, 429, 673, 715
FokI GGATG 2 cut(s) 56, 107
GsuI CTGGAG 1 cut(s) 332
HgaI GACGC 1 cut(s) 26
Hin1II CATG 4 cut(s) 113, 433, 677, 719
HinfI GANTC 5 cut(s) 89, 259, 304, 352, 617
HphI GGTGA 4 cut(s) 158, 254, 751, 848
Hpy188I TCNGA 2 cut(s) 349, 624
Hpy188III TCNNGA 5 cut(s) 311, 460, 500, 710, 823
Hpy99I CGWCG 1 cut(s) 476
HpyAV CCTTC 4 cut(s) 400, 444, 573, 577
HpyCH4III ACNGT 4 cut(s) 403, 688, 880, 900
HpyCH4IV ACGT 1 cut(s) 471
HpyCH4V TGCA 9 cut(s) 18, 24, 56, 129, 469, 547, 730, 792, 852
HpyF10VI GCNNNNNNNGC 2 cut(s) 126, 135
HpyF3I CTNAG 7 cut(s) 134, 289, 300, 348, 416, 518, 621
HpySE526I ACGT 1 cut(s) 471
Hsp92II CATG 4 cut(s) 113, 433, 677, 719
Kzo9I GATC 1 cut(s) 425
LmnI GCTCC 2 cut(s) 313, 811
LweI GCATC 3 cut(s) 129, 147, 850
MaeII ACGT 1 cut(s) 471
MaeIII GTNAC 1 cut(s) 680
MalI GATC 1 cut(s) 427
MboI GATC 1 cut(s) 425
MboII GAAGA 8 cut(s) 261, 299, 335, 407, 562, 691, 761, 811
MflI RGATCY 1 cut(s) 425
MluCI AATT 7 cut(s) 278, 332, 532, 608, 692, 724, 845
MlyI GAGTC 1 cut(s) 626
MmeI TCCRAC 1 cut(s) 833
MnlI CCTC 6 cut(s) 40, 134, 580, 638, 646, 771
Mph1103I ATGCAT 1 cut(s) 26
MseI TTAA 4 cut(s) 27, 228, 600, 648
MspR9I CCNGG 1 cut(s) 370
MvaI CCWGG 1 cut(s) 370
MwoI GCNNNNNNNGC 2 cut(s) 126, 135
NdeII GATC 1 cut(s) 425
NlaIII CATG 4 cut(s) 113, 433, 677, 719
NsiI ATGCAT 1 cut(s) 26
NspI RCATGY 1 cut(s) 719
PaeI GCATGC 1 cut(s) 719
PaeR7I CTCGAG 1 cut(s) 710
PfeI GAWTC 4 cut(s) 89, 259, 304, 352
PflMI CCANNNNNTGG 1 cut(s) 271
PfoI TCCNGGA 1 cut(s) 368
PleI GAGTC 1 cut(s) 625
PpsI GAGTC 1 cut(s) 625
Psp6I CCWGG 1 cut(s) 368
PspGI CCWGG 1 cut(s) 368
PsuI RGATCY 1 cut(s) 425
RsaI GTAC 1 cut(s) 411
RsaNI GTAC 1 cut(s) 410
SaqAI TTAA 4 cut(s) 27, 228, 600, 648
Sau3AI GATC 1 cut(s) 425
SchI GAGTC 1 cut(s) 626
ScrFI CCNGG 1 cut(s) 370
SfaNI GCATC 3 cut(s) 129, 147, 850
SfcI CTRYAG 1 cut(s) 899
Sfr274I CTCGAG 1 cut(s) 710
SlaI CTCGAG 1 cut(s) 710
SmlI CTYRAG 1 cut(s) 710
SmoI CTYRAG 1 cut(s) 710
SphI GCATGC 1 cut(s) 719
Sse9I AATT 7 cut(s) 278, 332, 532, 608, 692, 724, 845
SsiI CCGC 1 cut(s) 594
StyD4I CCNGG 1 cut(s) 368
TaaI ACNGT 4 cut(s) 403, 688, 880, 900
TaiI ACGT 1 cut(s) 474
TaqI TCGA 1 cut(s) 711
TasI AATT 7 cut(s) 278, 332, 532, 608, 692, 724, 845
TfiI GAWTC 4 cut(s) 89, 259, 304, 352
Tru1I TTAA 4 cut(s) 27, 228, 600, 648
Tru9I TTAA 4 cut(s) 27, 228, 600, 648
TspDTI ATGAA 2 cut(s) 98, 625
Van91I CCANNNNNTGG 1 cut(s) 271
XapI RAATTY 4 cut(s) 332, 608, 692, 724
XceI RCATGY 1 cut(s) 719
XhoI CTCGAG 1 cut(s) 710
Zsp2I ATGCAT 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.