Rh3DG212000

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Forward (+)
19609876 .. 19621749
11874 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG212000.1

Sequence Viewer

Length: 456 bp
ATGGTTCATGGTTTCAGTGACCTCTGCAATCTTAGCATCTCAGGTGAGAAACTTGTTCGCGTACATATAGAGTGGGGATTTTATAAGCCCACCAGCAGATCTTTAAACATTTCCGTTCCAAATCTTAAAACTTTGAAATGGTTTGGAAGAGTATTGAATCACCAAGAGTTGGGGGATTTAGTGAGCTTAGAAAAAGCTGAGATTCTTCTGGAGCACAAGGAAAACGAAAGTTCCACGCCTTCTCCCTTCAATGATGTTTCTTTCTTGAGCATGCACATTGGGAGCTTGAATGATGACATGGTCCCTGCAATGGTCTCTCTGCTGAGTGGAATGGCTAACTTGAATGATGACATGGTCCCTGCAATGGTCTCTCTGCTAAGTGGAATGGCTAACTTGAATACTTTGCACATAAGTACATACCCTTCTGATCTAGTTGATAAACCAAAGGTAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

151

Amino Acids

16.67

Weight (kDa)

5.39

Isoelectric Point (pI)

49.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020338)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18950
malus_domestica MD04G1145800.v1.1
pyrus_communis pycom07g14440
rosa_samantha Rh3AG187400 Rh3BG215900 Rh3DG212000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 84
AccB7I CCANNNNNTGG 1 cut(s) 169
AccII CGCG 1 cut(s) 60
AfaI GTAC 2 cut(s) 63, 415
AfiI CCNNNNNNNGG 3 cut(s) 169, 310, 364
AgsI TTSAA 6 cut(s) 136, 157, 250, 289, 343, 397
AluBI AGCT 4 cut(s) 186, 197, 285, 453
AluI AGCT 4 cut(s) 186, 197, 285, 453
Alw21I GWGCWC 1 cut(s) 216
Alw26I GTCTC 2 cut(s) 319, 373
AspS9I GGNCC 2 cut(s) 301, 355
AsuHPI GGTGA 2 cut(s) 56, 152
AvaII GGWCC 2 cut(s) 301, 355
BarI GAAGNNNNNNTAC 2 cut(s) 406, 438
Bbv12I GWGCWC 1 cut(s) 216
BcoDI GTCTC 2 cut(s) 319, 373
BfaI CTAG 1 cut(s) 431
BglII AGATCT 1 cut(s) 98
Bme18I GGWCC 2 cut(s) 301, 355
BmgT120I GGNCC 2 cut(s) 301, 355
BmiI GGNNCC 2 cut(s) 303, 357
BmsI GCATC 1 cut(s) 45
BpmI CTGGAG 1 cut(s) 230
BpuEI CTTGAG 1 cut(s) 286
BsaI GGTCTC 2 cut(s) 319, 373
BsaXI ACNNNNNCTCC 2 cut(s) 226, 256
Bsc4I CCNNNNNNNGG 3 cut(s) 169, 310, 364
Bse3DI GCAATG 2 cut(s) 315, 369
BseLI CCNNNNNNNGG 3 cut(s) 169, 310, 364
BseMI GCAATG 2 cut(s) 315, 369
BseMII CTCAG 3 cut(s) 54, 189, 314
Bsh1236I CGCG 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 216
BslFI GGGAC 2 cut(s) 287, 341
BslI CCNNNNNNNGG 3 cut(s) 169, 310, 364
BsmAI GTCTC 2 cut(s) 319, 373
BsmFI GGGAC 2 cut(s) 287, 341
Bso31I GGTCTC 2 cut(s) 319, 373
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 2 cut(s) 98, 427
BspCNI CTCAG 3 cut(s) 53, 190, 315
BspFNI CGCG 1 cut(s) 60
BspLI GGNNCC 2 cut(s) 303, 357
BspTNI GGTCTC 2 cut(s) 319, 373
BsrDI GCAATG 2 cut(s) 315, 369
BssMI GATC 2 cut(s) 98, 427
Bst6I CTCTTC 1 cut(s) 142
BstC8I GCNNGC 1 cut(s) 272
BstDEI CTNAG 6 cut(s) 32, 40, 187, 198, 323, 377
BstFNI CGCG 1 cut(s) 60
BstKTI GATC 2 cut(s) 101, 430
BstMAI GTCTC 2 cut(s) 319, 373
BstMBI GATC 2 cut(s) 98, 427
BstMWI GCNNNNNNNGC 1 cut(s) 33
BstNSI RCATGY 1 cut(s) 274
BstUI CGCG 1 cut(s) 60
BstX2I RGATCY 1 cut(s) 98
BstYI RGATCY 1 cut(s) 98
BtsIMutI CAGTG 1 cut(s) 22
Cac8I GCNNGC 1 cut(s) 272
Cfr13I GGNCC 2 cut(s) 301, 355
Csp6I GTAC 2 cut(s) 62, 414
CviAII CATG 4 cut(s) 8, 271, 298, 352
CviJI RGCY 7 cut(s) 88, 186, 197, 285, 335, 389, 453
CviKI_1 RGCY 7 cut(s) 88, 186, 197, 285, 335, 389, 453
CviQI GTAC 2 cut(s) 62, 414
DdeI CTNAG 6 cut(s) 32, 40, 187, 198, 323, 377
DpnI GATC 2 cut(s) 100, 429
DpnII GATC 2 cut(s) 98, 427
DraI TTTAAA 1 cut(s) 105
Eam1104I CTCTTC 1 cut(s) 142
EarI CTCTTC 1 cut(s) 142
Eco31I GGTCTC 2 cut(s) 319, 373
Eco47I GGWCC 2 cut(s) 301, 355
FaeI CATG 4 cut(s) 11, 274, 301, 355
FaiI YATR 9 cut(s) 9, 66, 68, 84, 272, 299, 353, 410, 418
FaqI GGGAC 2 cut(s) 287, 341
FatI CATG 4 cut(s) 7, 270, 297, 351
FspBI CTAG 1 cut(s) 431
GsuI CTGGAG 1 cut(s) 230
Hin1II CATG 4 cut(s) 11, 274, 301, 355
HinfI GANTC 2 cut(s) 157, 202
HphI GGTGA 2 cut(s) 56, 152
Hpy188I TCNGA 1 cut(s) 427
Hpy188III TCNNGA 2 cut(s) 209, 265
HpyAV CCTTC 3 cut(s) 249, 256, 432
HpyCH4V TGCA 5 cut(s) 27, 274, 308, 362, 406
HpyF10VI GCNNNNNNNGC 1 cut(s) 33
HpyF3I CTNAG 6 cut(s) 32, 40, 187, 198, 323, 377
Hsp92II CATG 4 cut(s) 11, 274, 301, 355
Kzo9I GATC 2 cut(s) 98, 427
LmnI GCTCC 2 cut(s) 211, 282
LpnPI CCDG 5 cut(s) 27, 106, 194, 318, 372
LweI GCATC 1 cut(s) 45
MaeI CTAG 1 cut(s) 431
MaeIII GTNAC 1 cut(s) 17
MalI GATC 2 cut(s) 100, 429
MboI GATC 2 cut(s) 98, 427
MboII GAAGA 2 cut(s) 159, 197
MflI RGATCY 1 cut(s) 98
MhlI GDGCHC 1 cut(s) 216
MnlI CCTC 1 cut(s) 32
MseI TTAA 2 cut(s) 104, 126
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 33
NdeII GATC 2 cut(s) 98, 427
NlaIII CATG 4 cut(s) 11, 274, 301, 355
NlaIV GGNNCC 2 cut(s) 303, 357
NmuCI GTSAC 1 cut(s) 17
NspI RCATGY 1 cut(s) 274
PaeI GCATGC 1 cut(s) 274
PfeI GAWTC 2 cut(s) 157, 202
PflFI GACNNNGTC 2 cut(s) 299, 353
PflMI CCANNNNNTGG 1 cut(s) 169
PsiI TTATAA 1 cut(s) 84
PspN4I GGNNCC 2 cut(s) 303, 357
PspPI GGNCC 2 cut(s) 301, 355
PsuI RGATCY 1 cut(s) 98
PsyI GACNNNGTC 2 cut(s) 299, 353
RsaI GTAC 2 cut(s) 63, 415
RsaNI GTAC 2 cut(s) 62, 414
SaqAI TTAA 2 cut(s) 104, 126
Sau3AI GATC 2 cut(s) 98, 427
Sau96I GGNCC 2 cut(s) 301, 355
SduI GDGCHC 1 cut(s) 216
SetI ASST 7 cut(s) 24, 46, 188, 199, 287, 450, 455
SfaNI GCATC 1 cut(s) 45
SinI GGWCC 2 cut(s) 301, 355
SmlI CTYRAG 1 cut(s) 265
SmoI CTYRAG 1 cut(s) 265
SphI GCATGC 1 cut(s) 274
SspMI CTAG 1 cut(s) 431
TatI WGTACW 1 cut(s) 413
TfiI GAWTC 2 cut(s) 157, 202
Tru1I TTAA 2 cut(s) 104, 126
Tru9I TTAA 2 cut(s) 104, 126
TscAI CASTG 1 cut(s) 22
TseFI GTSAC 1 cut(s) 17
Tsp45I GTSAC 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 103
TspRI CASTG 1 cut(s) 22
Tth111I GACNNNGTC 2 cut(s) 299, 353
Van91I CCANNNNNTGG 1 cut(s) 169
VpaK11BI GGWCC 2 cut(s) 301, 355
XceI RCATGY 1 cut(s) 274
XspI CTAG 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.