MD04G1145800.v1.1

F-box LRR-repeat protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
23435097 .. 23436714
1618 bp
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UTR
Exon/CDS
Intron
MD04G1145800.v1.1.491

Sequence Viewer

Length: 201 bp
ATGGACTGGGGTGGTTACGATGTATTTGCCAGCAGAGAAAGCACAAATAGCAACACATCATTGAAGATTTTTGCTCCAAATCTTAAAACTTTGAAATGGAAAGGGGAGTTGAGGAATAGCCAAAGTCTGGGACGTTTAGAGAGTTTGGAAGCAGTTGAGATTTTATTAGAGCCTCCGAAAAATGAGTTTGACAAAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

67

Amino Acids

7.5

Weight (kDa)

5.31

Isoelectric Point (pI)

38.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020338)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18950
malus_domestica MD04G1145800.v1.1
pyrus_communis pycom07g14440
rosa_samantha Rh3AG187400 Rh3BG215900 Rh3DG212000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 127
AfiI CCNNNNNNNGG 1 cut(s) 127
AgsI TTSAA 2 cut(s) 64, 94
BcgI CGANNNNNNTGC 2 cut(s) 8, 42
BfaI CTAG 1 cut(s) 199
BmrI ACTGGG 1 cut(s) 16
BmuI ACTGGG 1 cut(s) 16
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse1I ACTGG 1 cut(s) 11
BseLI CCNNNNNNNGG 1 cut(s) 127
BseNI ACTGG 1 cut(s) 11
BslFI GGGAC 1 cut(s) 144
BslI CCNNNNNNNGG 1 cut(s) 127
BsmFI GGGAC 1 cut(s) 144
BsrI ACTGG 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 31
BstMWI GCNNNNNNNGC 2 cut(s) 39, 48
Cac8I GCNNGC 1 cut(s) 31
CviJI RGCY 2 cut(s) 120, 172
CviKI_1 RGCY 2 cut(s) 120, 172
FaqI GGGAC 1 cut(s) 144
FspBI CTAG 1 cut(s) 199
Hpy188I TCNGA 1 cut(s) 177
HpyCH4IV ACGT 1 cut(s) 133
HpyF10VI GCNNNNNNNGC 2 cut(s) 39, 48
HpySE526I ACGT 1 cut(s) 133
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 2 cut(s) 43, 113
MaeI CTAG 1 cut(s) 199
MaeII ACGT 1 cut(s) 133
MaeIII GTNAC 1 cut(s) 14
MboII GAAGA 1 cut(s) 76
MnlI CCTC 2 cut(s) 105, 183
MseI TTAA 1 cut(s) 84
MwoI GCNNNNNNNGC 2 cut(s) 39, 48
PflFI GACNNNGTC 1 cut(s) 194
PflMI CCANNNNNTGG 1 cut(s) 127
PsyI GACNNNGTC 1 cut(s) 194
SaqAI TTAA 1 cut(s) 84
SetI ASST 1 cut(s) 136
SgeI CNNG 3 cut(s) 19, 42, 140
SspMI CTAG 1 cut(s) 199
TaiI ACGT 1 cut(s) 136
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
Tth111I GACNNNGTC 1 cut(s) 194
Van91I CCANNNNNTGG 1 cut(s) 127
XspI CTAG 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.