FvH4_6g19060

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0018054
Physical Location & Seq
Reverse (-)
12630350 .. 12630946
597 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g19060.t1

Sequence Viewer

Length: 597 bp
ATGTCAAGCACTGAAAACCAAGGGATCAGGCGGCAGGCCACTCTGTTCAGGAAGGCTCGTCACTTGTCAGTTTTATGTGATGCGGAGGTGGCCGTCATCGCTTTCACTAAGGATGGAAAGCTTCATGAGTTCTCGAGCACCACCATGGAGCACACACTTTCAAGATACAAGGGCAAGGTGGAGCAGTCTAAGCCAGGAGAACGTCGCCGCCGCGAACCAGCTGCGAAACTGAAAGAGGAGCCAAAACCATGTGATGAGAAGTACATTCTTGATGAACCGAAGAGACAACATGCAGCGCTGAGCTTGGAGAAGTCGCGGAAGATGGGGAAAGAGTTGGATGGCTTGAGTAGGGAGGAGCTGTGTGCCCTAGAGGAACAGCAACTATGGGCGTTGTTAGCTGTCAATAACAAGAAGAAGGAACTAATCATGGAGATGTTGCAGAGGTCTATGTCGCGTGATGAGCAGCGCGGTGATCTGCAAGAGAAGAACCTGATGAGAGGGTTTGAGGAAAGACCATATGTCCTTCAAGATCACAATCGTCCCTCAGAGGACAGTGACGACGTGCATTCTGAGCTCTTGCAACTGCGGCTGGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

199

Amino Acids

23.02

Weight (kDa)

7.74

Isoelectric Point (pI)

71.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 10 - 44 2.6e-12 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018054)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g19060
rosa_chinensis RchiOBHm_Chr3g0474101
rosa_laevigata RLG00000023950
rosa_multiflora Rmu_sc0004507.1_g000033
rosa_roxburghii Rroxscaffold_6G00407480
rosa_rugosa Rorug03G0138800
rosa_samantha Rh3AG188800 Rh3BG218200 Rh3CG213900 Rh3DG213400
rosa_wichuraiana Rw3G017270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 213, 316, 454, 468
AciI CCGC 7 cut(s) 31, 83, 208, 211, 316, 468, 586
AclWI GGATC 1 cut(s) 32
AcoI YGGCCR 1 cut(s) 90
AfaI GTAC 1 cut(s) 263
AfeI AGCGCT 1 cut(s) 297
AgsI TTSAA 2 cut(s) 162, 527
AhdI GACNNNNNGTC 1 cut(s) 518
AjiI CACGTC 1 cut(s) 562
AjnI CCWGG 1 cut(s) 193
AluBI AGCT 6 cut(s) 121, 221, 303, 358, 398, 574
AluI AGCT 6 cut(s) 121, 221, 303, 358, 398, 574
Alw21I GWGCWC 3 cut(s) 140, 153, 576
Alw26I GTCTC 1 cut(s) 277
AlwI GGATC 1 cut(s) 32
Ama87I CYCGRG 1 cut(s) 133
Aor51HI AGCGCT 1 cut(s) 297
AoxI GGCC 2 cut(s) 36, 90
ApeKI GCWGC 3 cut(s) 221, 293, 463
AspLEI GCGC 2 cut(s) 298, 468
AsuHPI GGTGA 1 cut(s) 482
AvaI CYCGRG 1 cut(s) 133
BaeGI GKGCMC 1 cut(s) 367
BanII GRGCYC 1 cut(s) 576
Bbv12I GWGCWC 3 cut(s) 140, 153, 576
BbvI GCAGC 3 cut(s) 208, 305, 475
BccI CCATC 3 cut(s) 107, 316, 332
BceAI ACGGC 1 cut(s) 77
BcgI CGANNNNNNTGC 2 cut(s) 203, 237
BciT130I CCWGG 1 cut(s) 195
BcoDI GTCTC 1 cut(s) 277
BfaI CTAG 1 cut(s) 368
BfoI RGCGCY 1 cut(s) 299
BisI GCNGC 7 cut(s) 32, 208, 211, 222, 294, 464, 587
BlpI GCTNAGC 1 cut(s) 299
BlsI GCNGC 7 cut(s) 33, 209, 212, 223, 295, 465, 588
Bme1390I CCNGG 1 cut(s) 195
BmeRI GACNNNNNGTC 1 cut(s) 518
BmeT110I CYCGRG 1 cut(s) 133
BmgBI CACGTC 1 cut(s) 562
BmiI GGNNCC 1 cut(s) 240
BmrFI CCNGG 1 cut(s) 195
BmsI GCATC 1 cut(s) 70
Bpu1102I GCTNAGC 1 cut(s) 299
BpuEI CTTGAG 1 cut(s) 364
BsaBI GATNNNNATC 1 cut(s) 534
BsaJI CCNNGG 2 cut(s) 19, 144
BsaXI ACNNNNNCTCC 2 cut(s) 344, 374
Bse8I GATNNNNATC 1 cut(s) 534
BseBI CCWGG 1 cut(s) 195
BseDI CCNNGG 2 cut(s) 19, 144
BseGI GGATG 2 cut(s) 118, 343
BseJI GATNNNNATC 1 cut(s) 534
BseMII CTCAG 3 cut(s) 290, 558, 561
BseRI GAGGAG 2 cut(s) 251, 368
BseSI GKGCMC 1 cut(s) 367
BseXI GCAGC 3 cut(s) 208, 305, 475
BseYI CCCAGC 1 cut(s) 589
Bsh1236I CGCG 4 cut(s) 213, 316, 454, 468
BshFI GGCC 2 cut(s) 38, 92
BsiHKAI GWGCWC 3 cut(s) 140, 153, 576
BsiHKCI CYCGRG 1 cut(s) 133
BslFI GGGAC 1 cut(s) 525
BsmAI GTCTC 1 cut(s) 277
BsmFI GGGAC 1 cut(s) 525
BsmI GAATGC 1 cut(s) 565
BsnI GGCC 2 cut(s) 38, 92
BsoBI CYCGRG 1 cut(s) 133
Bsp1286I GDGCHC 4 cut(s) 140, 153, 367, 576
Bsp143I GATC 3 cut(s) 24, 472, 529
Bsp1720I GCTNAGC 1 cut(s) 299
Bsp19I CCATGG 1 cut(s) 144
BspACI CCGC 7 cut(s) 31, 83, 208, 211, 316, 468, 586
BspANI GGCC 2 cut(s) 38, 92
BspCNI CTCAG 3 cut(s) 291, 557, 562
BspFNI CGCG 4 cut(s) 213, 316, 454, 468
BspHI TCATGA 1 cut(s) 124
BspLI GGNNCC 1 cut(s) 240
BspPI GGATC 1 cut(s) 32
BssECI CCNNGG 2 cut(s) 19, 144
BssMI GATC 3 cut(s) 24, 472, 529
BssT1I CCWWGG 2 cut(s) 19, 144
Bst2UI CCWGG 1 cut(s) 195
Bst4CI ACNGT 1 cut(s) 554
Bst6I CTCTTC 1 cut(s) 275
BstC8I GCNNGC 1 cut(s) 36
BstDEI CTNAG 5 cut(s) 108, 189, 299, 544, 570
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 2 cut(s) 118, 343
BstFNI CGCG 4 cut(s) 213, 316, 454, 468
BstH2I RGCGCY 1 cut(s) 299
BstHHI GCGC 2 cut(s) 298, 468
BstKTI GATC 3 cut(s) 27, 475, 532
BstMAI GTCTC 1 cut(s) 277
BstMBI GATC 3 cut(s) 24, 472, 529
BstMWI GCNNNNNNNGC 7 cut(s) 89, 98, 190, 395, 460, 571, 586
BstNI CCWGG 1 cut(s) 195
BstNSI RCATGY 1 cut(s) 293
BstSCI CCNGG 1 cut(s) 193
BstSLI GKGCMC 1 cut(s) 367
BstUI CGCG 4 cut(s) 213, 316, 454, 468
BstV1I GCAGC 3 cut(s) 208, 305, 475
BsuRI GGCC 2 cut(s) 38, 92
BtgI CCRYGG 1 cut(s) 144
BtgZI GCGATG 1 cut(s) 82
BtrI CACGTC 1 cut(s) 562
BtsCI GGATG 2 cut(s) 118, 343
BtsIMutI CAGTG 2 cut(s) 9, 559
Cac8I GCNNGC 1 cut(s) 36
CciI TCATGA 1 cut(s) 124
CfoI GCGC 2 cut(s) 298, 468
Csp6I GTAC 1 cut(s) 262
CviAII CATG 5 cut(s) 125, 145, 249, 290, 427
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 5 cut(s) 108, 189, 299, 544, 570
DpnI GATC 3 cut(s) 26, 474, 531
DpnII GATC 3 cut(s) 24, 472, 529
DriI GACNNNNNGTC 1 cut(s) 518
EaeI YGGCCR 1 cut(s) 90
Eam1104I CTCTTC 1 cut(s) 275
Eam1105I GACNNNNNGTC 1 cut(s) 518
EarI CTCTTC 1 cut(s) 275
Ecl136II GAGCTC 1 cut(s) 574
Eco130I CCWWGG 2 cut(s) 19, 144
Eco24I GRGCYC 1 cut(s) 576
Eco47III AGCGCT 1 cut(s) 297
Eco53kI GAGCTC 1 cut(s) 574
Eco88I CYCGRG 1 cut(s) 133
EcoICRI GAGCTC 1 cut(s) 574
EcoRII CCWGG 1 cut(s) 193
EcoT14I CCWWGG 2 cut(s) 19, 144
EcoT38I GRGCYC 1 cut(s) 576
ErhI CCWWGG 2 cut(s) 19, 144
FaeI CATG 5 cut(s) 128, 148, 252, 293, 430
FaqI GGGAC 1 cut(s) 525
FatI CATG 5 cut(s) 124, 144, 248, 289, 426
FauNDI CATATG 1 cut(s) 517
Fnu4HI GCNGC 7 cut(s) 32, 208, 211, 222, 294, 464, 587
FokI GGATG 2 cut(s) 125, 350
FriOI GRGCYC 1 cut(s) 576
Fsp4HI GCNGC 7 cut(s) 32, 208, 211, 222, 294, 464, 587
FspBI CTAG 1 cut(s) 368
GlaI GCGC 2 cut(s) 297, 467
GluI GCNGC 7 cut(s) 32, 208, 211, 222, 294, 464, 587
GsaI CCCAGC 1 cut(s) 593
HaeII RGCGCY 1 cut(s) 299
HaeIII GGCC 2 cut(s) 38, 92
HhaI GCGC 2 cut(s) 298, 468
Hin1II CATG 5 cut(s) 128, 148, 252, 293, 430
Hin6I GCGC 2 cut(s) 296, 466
HinP1I GCGC 2 cut(s) 296, 466
HindIII AAGCTT 1 cut(s) 119
HphI GGTGA 1 cut(s) 482
Hpy188I TCNGA 2 cut(s) 547, 571
Hpy188III TCNNGA 6 cut(s) 49, 125, 133, 162, 269, 527
Hpy99I CGWCG 2 cut(s) 207, 563
HpyAV CCTTC 3 cut(s) 46, 409, 533
HpyCH4III ACNGT 1 cut(s) 554
HpyCH4IV ACGT 2 cut(s) 202, 561
HpyCH4V TGCA 5 cut(s) 293, 439, 478, 565, 580
HpyF10VI GCNNNNNNNGC 7 cut(s) 89, 98, 190, 395, 460, 571, 586
HpyF3I CTNAG 5 cut(s) 108, 189, 299, 544, 570
HpySE526I ACGT 2 cut(s) 202, 561
Hsp92II CATG 5 cut(s) 128, 148, 252, 293, 430
HspAI GCGC 2 cut(s) 296, 466
Kzo9I GATC 3 cut(s) 24, 472, 529
LmnI GCTCC 4 cut(s) 148, 181, 238, 355
LpnPI CCDG 8 cut(s) 13, 20, 34, 180, 207, 231, 503, 575
Lsp1109I GCAGC 3 cut(s) 208, 305, 475
LweI GCATC 1 cut(s) 70
MaeI CTAG 1 cut(s) 368
MaeII ACGT 2 cut(s) 202, 561
MaeIII GTNAC 2 cut(s) 59, 554
MalI GATC 3 cut(s) 26, 474, 531
MboI GATC 3 cut(s) 24, 472, 529
MboII GAAGA 4 cut(s) 292, 331, 424, 496
MhlI GDGCHC 4 cut(s) 140, 153, 367, 576
MmeI TCCRAC 1 cut(s) 315
MnlI CCTC 9 cut(s) 79, 229, 346, 364, 435, 491, 499, 541, 553
MslI CAYNNNNRTG 2 cut(s) 143, 431
MspA1I CMGCKG 1 cut(s) 221
MspR9I CCNGG 1 cut(s) 195
Mva1269I GAATGC 1 cut(s) 565
MvaI CCWGG 1 cut(s) 195
MvnI CGCG 4 cut(s) 213, 316, 454, 468
MwoI GCNNNNNNNGC 7 cut(s) 89, 98, 190, 395, 460, 571, 586
NcoI CCATGG 1 cut(s) 144
NdeI CATATG 1 cut(s) 517
NdeII GATC 3 cut(s) 24, 472, 529
NlaIII CATG 5 cut(s) 128, 148, 252, 293, 430
NlaIV GGNNCC 1 cut(s) 240
NmuCI GTSAC 2 cut(s) 59, 554
NspI RCATGY 1 cut(s) 293
PaeR7I CTCGAG 1 cut(s) 133
PagI TCATGA 1 cut(s) 124
PctI GAATGC 1 cut(s) 565
PkrI GCNGC 7 cut(s) 33, 209, 212, 223, 295, 465, 588
Psp124BI GAGCTC 1 cut(s) 576
Psp6I CCWGG 1 cut(s) 193
PspFI CCCAGC 1 cut(s) 589
PspGI CCWGG 1 cut(s) 193
PspN4I GGNNCC 1 cut(s) 240
PvuII CAGCTG 1 cut(s) 221
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
RseI CAYNNNNRTG 2 cut(s) 143, 431
SacI GAGCTC 1 cut(s) 576
SatI GCNGC 7 cut(s) 32, 208, 211, 222, 294, 464, 587
Sau3AI GATC 3 cut(s) 24, 472, 529
ScrFI CCNGG 1 cut(s) 195
SduI GDGCHC 4 cut(s) 140, 153, 367, 576
SfaNI GCATC 1 cut(s) 70
Sfr274I CTCGAG 1 cut(s) 133
SlaI CTCGAG 1 cut(s) 133
SmiMI CAYNNNNRTG 2 cut(s) 143, 431
SmlI CTYRAG 2 cut(s) 133, 343
SmoI CTYRAG 2 cut(s) 133, 343
SsiI CCGC 7 cut(s) 31, 83, 208, 211, 316, 468, 586
SspMI CTAG 1 cut(s) 368
SstI GAGCTC 1 cut(s) 576
StyD4I CCNGG 1 cut(s) 193
StyI CCWWGG 2 cut(s) 19, 144
TaaI ACNGT 1 cut(s) 554
TaiI ACGT 2 cut(s) 205, 564
TaqI TCGA 1 cut(s) 134
TatI WGTACW 1 cut(s) 261
TauI GCSGC 4 cut(s) 34, 210, 213, 589
TscAI CASTG 2 cut(s) 16, 559
TseFI GTSAC 2 cut(s) 59, 554
TseI GCWGC 3 cut(s) 221, 293, 463
Tsp45I GTSAC 2 cut(s) 59, 554
TspDTI ATGAA 2 cut(s) 113, 288
TspRI CASTG 2 cut(s) 16, 559
XceI RCATGY 1 cut(s) 293
XhoI CTCGAG 1 cut(s) 133
XspI CTAG 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.