transcription regulatory region sequence-specific DNA binding
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Oxysterol_BP | PF01237 | 65 - 422 | 1.4e-112 | Oxysterol-binding protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 822 |
| AatII | GACGTC | 2 cut(s) | 231, 1308 |
| Acc16I | TGCGCA | 1 cut(s) | 990 |
| AccB1I | GGYRCC | 2 cut(s) | 4, 655 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 914, 1215 |
| AciI | CCGC | 3 cut(s) | 27, 777, 1269 |
| AclWI | GGATC | 5 cut(s) | 8, 21, 189, 338, 351 |
| AcsI | RAATTY | 3 cut(s) | 572, 968, 1342 |
| AcuI | CTGAAG | 1 cut(s) | 969 |
| AcyI | GRCGYC | 3 cut(s) | 5, 228, 1305 |
| AfaI | GTAC | 2 cut(s) | 977, 1235 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 23, 128, 434, 914, 1094, 1215, 1263 |
| AflIII | ACRYGT | 1 cut(s) | 614 |
| AgsI | TTSAA | 8 cut(s) | 404, 424, 558, 770, 928, 1103, 1295, 1324 |
| AjnI | CCWGG | 5 cut(s) | 105, 410, 712, 913, 1328 |
| AluBI | AGCT | 5 cut(s) | 50, 791, 1005, 1094, 1133 |
| AluI | AGCT | 5 cut(s) | 50, 791, 1005, 1094, 1133 |
| Alw26I | GTCTC | 1 cut(s) | 434 |
| AlwI | GGATC | 5 cut(s) | 8, 21, 189, 338, 351 |
| AoxI | GGCC | 1 cut(s) | 103 |
| ApeKI | GCWGC | 2 cut(s) | 515, 1349 |
| ApoI | RAATTY | 3 cut(s) | 572, 968, 1342 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 419, 909 |
| AspLEI | GCGC | 3 cut(s) | 7, 65, 991 |
| AspS9I | GGNCC | 2 cut(s) | 103, 1266 |
| AsuHPI | GGTGA | 8 cut(s) | 61, 253, 449, 491, 574, 702, 914, 1091 |
| AvaII | GGWCC | 1 cut(s) | 1266 |
| BamHI | GGATCC | 2 cut(s) | 13, 343 |
| BanI | GGYRCC | 2 cut(s) | 4, 655 |
| BbvI | GCAGC | 2 cut(s) | 502, 1336 |
| BccI | CCATC | 7 cut(s) | 119, 162, 182, 295, 321, 803, 1173 |
| BceAI | ACGGC | 1 cut(s) | 50 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 164, 198 |
| BciT130I | CCWGG | 5 cut(s) | 107, 412, 714, 915, 1330 |
| BcoDI | GTCTC | 1 cut(s) | 434 |
| BfaI | CTAG | 1 cut(s) | 578 |
| BfmI | CTRYAG | 1 cut(s) | 281 |
| BfoI | RGCGCY | 2 cut(s) | 8, 66 |
| BglII | AGATCT | 1 cut(s) | 322 |
| BisI | GCNGC | 3 cut(s) | 516, 778, 1350 |
| BlsI | GCNGC | 3 cut(s) | 517, 779, 1351 |
| Bme1390I | CCNGG | 5 cut(s) | 107, 412, 714, 915, 1330 |
| Bme18I | GGWCC | 1 cut(s) | 1266 |
| BmgT120I | GGNCC | 2 cut(s) | 103, 1266 |
| BmiI | GGNNCC | 5 cut(s) | 6, 15, 345, 657, 837 |
| BmrFI | CCNGG | 5 cut(s) | 107, 412, 714, 915, 1330 |
| BmsI | GCATC | 2 cut(s) | 380, 1043 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 502, 534 |
| BpmI | CTGGAG | 3 cut(s) | 128, 1091, 1136 |
| BpuEI | CTTGAG | 1 cut(s) | 611 |
| BsaBI | GATNNNNATC | 2 cut(s) | 593, 597 |
| BsaHI | GRCGYC | 3 cut(s) | 5, 228, 1305 |
| BsaJI | CCNNGG | 3 cut(s) | 9, 831, 1328 |
| BsaWI | WCCGGW | 1 cut(s) | 1263 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 708, 738 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 23, 128, 434, 914, 1094, 1215, 1263 |
| Bse1I | ACTGG | 7 cut(s) | 156, 200, 251, 859, 973, 1035, 1074 |
| Bse8I | GATNNNNATC | 2 cut(s) | 593, 597 |
| BseBI | CCWGG | 5 cut(s) | 107, 412, 714, 915, 1330 |
| BseDI | CCNNGG | 3 cut(s) | 9, 831, 1328 |
| BseGI | GGATG | 3 cut(s) | 142, 193, 1225 |
| BseJI | GATNNNNATC | 2 cut(s) | 593, 597 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 23, 128, 434, 914, 1094, 1215, 1263 |
| BseNI | ACTGG | 7 cut(s) | 156, 200, 251, 859, 973, 1035, 1074 |
| BseRI | GAGGAG | 1 cut(s) | 1133 |
| BseXI | GCAGC | 2 cut(s) | 502, 1336 |
| BsgI | GTGCAG | 1 cut(s) | 660 |
| Bsh1285I | CGRYCG | 1 cut(s) | 831 |
| BshFI | GGCC | 1 cut(s) | 105 |
| BshNI | GGYRCC | 2 cut(s) | 4, 655 |
| BsiEI | CGRYCG | 1 cut(s) | 831 |
| BsiSI | CCGG | 1 cut(s) | 1264 |
| BslFI | GGGAC | 1 cut(s) | 1191 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 23, 128, 434, 914, 1094, 1215, 1263 |
| BsmAI | GTCTC | 1 cut(s) | 434 |
| BsmFI | GGGAC | 1 cut(s) | 1191 |
| BsnI | GGCC | 1 cut(s) | 105 |
| Bsp143I | GATC | 4 cut(s) | 13, 181, 322, 343 |
| BspACI | CCGC | 3 cut(s) | 27, 777, 1269 |
| BspANI | GGCC | 1 cut(s) | 105 |
| BspHI | TCATGA | 2 cut(s) | 145, 1162 |
| BspLI | GGNNCC | 5 cut(s) | 6, 15, 345, 657, 837 |
| BspPI | GGATC | 5 cut(s) | 8, 21, 189, 338, 351 |
| BspT107I | GGYRCC | 2 cut(s) | 4, 655 |
| BsrI | ACTGG | 7 cut(s) | 156, 200, 251, 859, 973, 1035, 1074 |
| BssECI | CCNNGG | 3 cut(s) | 9, 831, 1328 |
| BssMI | GATC | 4 cut(s) | 13, 181, 322, 343 |
| BssNI | GRCGYC | 3 cut(s) | 5, 228, 1305 |
| BssT1I | CCWWGG | 1 cut(s) | 9 |
| Bst2UI | CCWGG | 5 cut(s) | 107, 412, 714, 915, 1330 |
| BstACI | GRCGYC | 3 cut(s) | 5, 228, 1305 |
| BstC8I | GCNNGC | 1 cut(s) | 1096 |
| BstDEI | CTNAG | 2 cut(s) | 646, 1020 |
| BstEII | GGTNACC | 1 cut(s) | 241 |
| BstF5I | GGATG | 3 cut(s) | 142, 193, 1225 |
| BstH2I | RGCGCY | 2 cut(s) | 8, 66 |
| BstHHI | GCGC | 3 cut(s) | 7, 65, 991 |
| BstKTI | GATC | 4 cut(s) | 16, 184, 325, 346 |
| BstMAI | GTCTC | 1 cut(s) | 434 |
| BstMBI | GATC | 4 cut(s) | 13, 181, 322, 343 |
| BstMCI | CGRYCG | 1 cut(s) | 831 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 47, 521 |
| BstNI | CCWGG | 5 cut(s) | 107, 412, 714, 915, 1330 |
| BstNSI | RCATGY | 1 cut(s) | 355 |
| BstPI | GGTNACC | 1 cut(s) | 241 |
| BstSCI | CCNGG | 5 cut(s) | 105, 410, 712, 913, 1328 |
| BstSFI | CTRYAG | 1 cut(s) | 281 |
| BstV1I | GCAGC | 2 cut(s) | 502, 1336 |
| BstX2I | RGATCY | 3 cut(s) | 13, 322, 343 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 780, 1244 |
| BstYI | RGATCY | 3 cut(s) | 13, 322, 343 |
| BsuRI | GGCC | 1 cut(s) | 105 |
| BtsCI | GGATG | 3 cut(s) | 142, 193, 1225 |
| BtsI | GCAGTG | 1 cut(s) | 1011 |
| BtsIMutI | CAGTG | 3 cut(s) | 918, 1011, 1067 |
| Cac8I | GCNNGC | 1 cut(s) | 1096 |
| CciI | TCATGA | 2 cut(s) | 145, 1162 |
| CfoI | GCGC | 3 cut(s) | 7, 65, 991 |
| Cfr13I | GGNCC | 2 cut(s) | 103, 1266 |
| CpoI | CGGWCCG | 1 cut(s) | 1266 |
| CseI | GACGC | 2 cut(s) | 902, 1040 |
| Csp6I | GTAC | 2 cut(s) | 976, 1234 |
| CspI | CGGWCCG | 1 cut(s) | 1266 |
| CviAII | CATG | 7 cut(s) | 146, 352, 461, 521, 699, 774, 1163 |
| CviQI | GTAC | 2 cut(s) | 976, 1234 |
| DdeI | CTNAG | 2 cut(s) | 646, 1020 |
| DinI | GGCGCC | 1 cut(s) | 6 |
| DpnI | GATC | 4 cut(s) | 15, 183, 324, 345 |
| DpnII | GATC | 4 cut(s) | 13, 181, 322, 343 |
| EciI | GGCGGA | 1 cut(s) | 42 |
| Eco130I | CCWWGG | 1 cut(s) | 9 |
| Eco32I | GATATC | 1 cut(s) | 595 |
| Eco47I | GGWCC | 1 cut(s) | 1266 |
| Eco57I | CTGAAG | 1 cut(s) | 969 |
| Eco91I | GGTNACC | 1 cut(s) | 241 |
| EcoO109I | RGGNCCY | 1 cut(s) | 103 |
| EcoO65I | GGTNACC | 1 cut(s) | 241 |
| EcoRII | CCWGG | 5 cut(s) | 105, 410, 712, 913, 1328 |
| EcoRV | GATATC | 1 cut(s) | 595 |
| EcoT14I | CCWWGG | 1 cut(s) | 9 |
| EgeI | GGCGCC | 1 cut(s) | 6 |
| EheI | GGCGCC | 1 cut(s) | 6 |
| ErhI | CCWWGG | 1 cut(s) | 9 |
| FaeI | CATG | 7 cut(s) | 149, 355, 464, 524, 702, 777, 1166 |
| FaqI | GGGAC | 1 cut(s) | 1191 |
| FatI | CATG | 7 cut(s) | 145, 351, 460, 520, 698, 773, 1162 |
| Fnu4HI | GCNGC | 3 cut(s) | 516, 778, 1350 |
| FokI | GGATG | 3 cut(s) | 149, 200, 1232 |
| Fsp4HI | GCNGC | 3 cut(s) | 516, 778, 1350 |
| FspBI | CTAG | 1 cut(s) | 578 |
| FspI | TGCGCA | 1 cut(s) | 990 |
| GlaI | GCGC | 3 cut(s) | 6, 64, 990 |
| GluI | GCNGC | 3 cut(s) | 516, 778, 1350 |
| GsuI | CTGGAG | 3 cut(s) | 128, 1091, 1136 |
| HaeII | RGCGCY | 2 cut(s) | 8, 66 |
| HaeIII | GGCC | 1 cut(s) | 105 |
| HapII | CCGG | 1 cut(s) | 1264 |
| HgaI | GACGC | 2 cut(s) | 902, 1040 |
| HhaI | GCGC | 3 cut(s) | 7, 65, 991 |
| Hin1I | GRCGYC | 3 cut(s) | 5, 228, 1305 |
| Hin1II | CATG | 7 cut(s) | 149, 355, 464, 524, 702, 777, 1166 |
| Hin6I | GCGC | 3 cut(s) | 5, 63, 989 |
| HinP1I | GCGC | 3 cut(s) | 5, 63, 989 |
| HincII | GTYRAC | 2 cut(s) | 82, 676 |
| HindII | GTYRAC | 2 cut(s) | 82, 676 |
| HinfI | GANTC | 5 cut(s) | 707, 869, 932, 1040, 1280 |
| HpaII | CCGG | 1 cut(s) | 1264 |
| HphI | GGTGA | 8 cut(s) | 61, 253, 449, 491, 574, 702, 914, 1091 |
| Hpy166II | GTNNAC | 7 cut(s) | 82, 391, 676, 905, 978, 1170, 1234 |
| Hpy188I | TCNGA | 2 cut(s) | 1039, 1285 |
| Hpy188III | TCNNGA | 8 cut(s) | 122, 146, 185, 628, 956, 1055, 1115, 1163 |
| Hpy8I | GTNNAC | 7 cut(s) | 82, 391, 676, 905, 978, 1170, 1234 |
| Hpy99I | CGWCG | 1 cut(s) | 1307 |
| HpyAV | CCTTC | 5 cut(s) | 193, 257, 603, 687, 893 |
| HpyCH4IV | ACGT | 3 cut(s) | 228, 616, 1305 |
| HpyCH4V | TGCA | 7 cut(s) | 208, 355, 371, 524, 641, 1067, 1228 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 47, 521 |
| HpyF3I | CTNAG | 2 cut(s) | 646, 1020 |
| HpySE526I | ACGT | 3 cut(s) | 228, 616, 1305 |
| Hsp92I | GRCGYC | 3 cut(s) | 5, 228, 1305 |
| Hsp92II | CATG | 7 cut(s) | 149, 355, 464, 524, 702, 777, 1166 |
| HspAI | GCGC | 3 cut(s) | 5, 63, 989 |
| KasI | GGCGCC | 1 cut(s) | 4 |
| Kzo9I | GATC | 4 cut(s) | 13, 181, 322, 343 |
| LmnI | GCTCC | 3 cut(s) | 788, 1021, 1072 |
| Lsp1109I | GCAGC | 2 cut(s) | 502, 1336 |
| LweI | GCATC | 2 cut(s) | 380, 1043 |
| MaeI | CTAG | 1 cut(s) | 578 |
| MaeII | ACGT | 3 cut(s) | 228, 616, 1305 |
| MaeIII | GTNAC | 7 cut(s) | 67, 191, 229, 241, 890, 1026, 1079 |
| MalI | GATC | 4 cut(s) | 15, 183, 324, 345 |
| MboI | GATC | 4 cut(s) | 13, 181, 322, 343 |
| MboII | GAAGA | 3 cut(s) | 28, 161, 177 |
| MfeI | CAATTG | 1 cut(s) | 356 |
| MflI | RGATCY | 3 cut(s) | 13, 322, 343 |
| MluCI | AATT | 8 cut(s) | 356, 572, 684, 733, 823, 923, 968, 1342 |
| Mly113I | GGCGCC | 1 cut(s) | 5 |
| MlyI | GAGTC | 3 cut(s) | 878, 941, 1274 |
| MroXI | GAANNNNTTC | 2 cut(s) | 419, 909 |
| MseI | TTAA | 2 cut(s) | 456, 683 |
| MslI | CAYNNNNRTG | 1 cut(s) | 236 |
| MspI | CCGG | 1 cut(s) | 1264 |
| MspR9I | CCNGG | 5 cut(s) | 107, 412, 714, 915, 1330 |
| MunI | CAATTG | 1 cut(s) | 356 |
| MvaI | CCWGG | 5 cut(s) | 107, 412, 714, 915, 1330 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 47, 521 |
| NarI | GGCGCC | 1 cut(s) | 5 |
| NdeII | GATC | 4 cut(s) | 13, 181, 322, 343 |
| NlaIII | CATG | 7 cut(s) | 149, 355, 464, 524, 702, 777, 1166 |
| NlaIV | GGNNCC | 5 cut(s) | 6, 15, 345, 657, 837 |
| NmuCI | GTSAC | 5 cut(s) | 67, 229, 241, 890, 1079 |
| NsbI | TGCGCA | 1 cut(s) | 990 |
| NspI | RCATGY | 1 cut(s) | 355 |
| PagI | TCATGA | 2 cut(s) | 145, 1162 |
| PdmI | GAANNNNTTC | 2 cut(s) | 419, 909 |
| PfeI | GAWTC | 2 cut(s) | 707, 1040 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 914, 1215 |
| PkrI | GCNGC | 3 cut(s) | 517, 779, 1351 |
| PleI | GAGTC | 3 cut(s) | 877, 940, 1274 |
| PluTI | GGCGCC | 1 cut(s) | 8 |
| PpsI | GAGTC | 3 cut(s) | 877, 940, 1274 |
| PsiI | TTATAA | 1 cut(s) | 822 |
| Psp6I | CCWGG | 5 cut(s) | 105, 410, 712, 913, 1328 |
| PspEI | GGTNACC | 1 cut(s) | 241 |
| PspGI | CCWGG | 5 cut(s) | 105, 410, 712, 913, 1328 |
| PspN4I | GGNNCC | 5 cut(s) | 6, 15, 345, 657, 837 |
| PspPI | GGNCC | 2 cut(s) | 103, 1266 |
| PsuI | RGATCY | 3 cut(s) | 13, 322, 343 |
| RsaI | GTAC | 2 cut(s) | 977, 1235 |
| RsaNI | GTAC | 2 cut(s) | 976, 1234 |
| RseI | CAYNNNNRTG | 1 cut(s) | 236 |
| Rsr2I | CGGWCCG | 1 cut(s) | 1266 |
| RsrII | CGGWCCG | 1 cut(s) | 1266 |
| SaqAI | TTAA | 2 cut(s) | 456, 683 |
| SatI | GCNGC | 3 cut(s) | 516, 778, 1350 |
| Sau3AI | GATC | 4 cut(s) | 13, 181, 322, 343 |
| Sau96I | GGNCC | 2 cut(s) | 103, 1266 |
| SchI | GAGTC | 3 cut(s) | 878, 941, 1274 |
| ScrFI | CCNGG | 5 cut(s) | 107, 412, 714, 915, 1330 |
| SfaNI | GCATC | 2 cut(s) | 380, 1043 |
| SfcI | CTRYAG | 1 cut(s) | 281 |
| SfoI | GGCGCC | 1 cut(s) | 6 |
| SinI | GGWCC | 1 cut(s) | 1266 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 236 |
| SmlI | CTYRAG | 1 cut(s) | 626 |
| SmoI | CTYRAG | 1 cut(s) | 626 |
| Sse9I | AATT | 8 cut(s) | 356, 572, 684, 733, 823, 923, 968, 1342 |
| SsiI | CCGC | 3 cut(s) | 27, 777, 1269 |
| SspDI | GGCGCC | 1 cut(s) | 4 |
| SspMI | CTAG | 1 cut(s) | 578 |
| StyD4I | CCNGG | 5 cut(s) | 105, 410, 712, 913, 1328 |
| StyI | CCWWGG | 1 cut(s) | 9 |
| TaiI | ACGT | 3 cut(s) | 231, 619, 1308 |
| TaqI | TCGA | 4 cut(s) | 587, 827, 1008, 1302 |
| TaqII | GACCGA | 1 cut(s) | 845 |
| TasI | AATT | 8 cut(s) | 356, 572, 684, 733, 823, 923, 968, 1342 |
| TatI | WGTACW | 1 cut(s) | 975 |
| TauI | GCSGC | 1 cut(s) | 780 |
| TfiI | GAWTC | 2 cut(s) | 707, 1040 |
| Tru1I | TTAA | 2 cut(s) | 456, 683 |
| Tru9I | TTAA | 2 cut(s) | 456, 683 |
| TscAI | CASTG | 3 cut(s) | 925, 1018, 1074 |
| TseFI | GTSAC | 5 cut(s) | 67, 229, 241, 890, 1079 |
| TseI | GCWGC | 2 cut(s) | 515, 1349 |
| Tsp45I | GTSAC | 5 cut(s) | 67, 229, 241, 890, 1079 |
| TspDTI | ATGAA | 6 cut(s) | 134, 162, 348, 529, 816, 1212 |
| TspGWI | ACGGA | 3 cut(s) | 67, 99, 149 |
| TspRI | CASTG | 3 cut(s) | 925, 1018, 1074 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 914, 1215 |
| VpaK11BI | GGWCC | 1 cut(s) | 1266 |
| XapI | RAATTY | 3 cut(s) | 572, 968, 1342 |
| XceI | RCATGY | 1 cut(s) | 355 |
| XmnI | GAANNNNTTC | 2 cut(s) | 419, 909 |
| XspI | CTAG | 1 cut(s) | 578 |
| ZraI | GACGTC | 2 cut(s) | 229, 1306 |