Rmu_sc0004507.1_g000030

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004507.1
Physical Location & Seq
Reverse (-)
136846 .. 137178
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004507.1_g000030.1.cds

Sequence Viewer

Length: 333 bp
atgagaatggaacccaagagtaagttggtggctactgcaagttttggtgaaggtagaggaggttgtattgtgaatgagagcaagaaagataggcttagtaatcttccagacgaaatcgtgcaccacattctttcttcctcacttaaaacacctatccttgatatagaggacctcactgtgttcagctgtgtgtccaaacgatgcacacaacttgtcctgtcaaacccgactttgcgttttgatggatttcagaggactagaatatccacctgtagtactttgggacctgattttggggttttgggggttgggaaacaaggtggctgtaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

110

Amino Acids

11.91

Weight (kDa)

8.71

Isoelectric Point (pI)

38.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 277
AfiI CCNNNNNNNGG 1 cut(s) 293
AluBI AGCT 1 cut(s) 186
AluI AGCT 1 cut(s) 186
Alw21I GWGCWC 1 cut(s) 123
Alw44I GTGCAC 1 cut(s) 119
ApaLI GTGCAC 1 cut(s) 119
AspS9I GGNCC 2 cut(s) 169, 284
AsuHPI GGTGA 1 cut(s) 59
AvaII GGWCC 2 cut(s) 169, 284
BaeGI GKGCMC 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 123
BccI CCATC 1 cut(s) 236
BfaI CTAG 1 cut(s) 258
BfmI CTRYAG 1 cut(s) 271
BmcAI AGTACT 1 cut(s) 277
Bme18I GGWCC 2 cut(s) 169, 284
BmgT120I GGNCC 2 cut(s) 169, 284
BmiI GGNNCC 2 cut(s) 12, 285
BmsI GCATC 1 cut(s) 191
Bsc4I CCNNNNNNNGG 1 cut(s) 293
BseLI CCNNNNNNNGG 1 cut(s) 293
BseRI GAGGAG 1 cut(s) 72
BseSI GKGCMC 1 cut(s) 123
BsiHKAI GWGCWC 1 cut(s) 123
BslFI GGGAC 1 cut(s) 297
BslI CCNNNNNNNGG 1 cut(s) 293
BsmFI GGGAC 1 cut(s) 297
Bsp1286I GDGCHC 1 cut(s) 123
BspLI GGNNCC 2 cut(s) 12, 285
Bst4CI ACNGT 1 cut(s) 178
BstDEI CTNAG 1 cut(s) 95
BstSFI CTRYAG 1 cut(s) 271
BstSLI GKGCMC 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 174
Cfr13I GGNCC 2 cut(s) 169, 284
Csp6I GTAC 1 cut(s) 276
CviJI RGCY 4 cut(s) 32, 94, 186, 324
CviKI_1 RGCY 4 cut(s) 32, 94, 186, 324
CviQI GTAC 1 cut(s) 276
DdeI CTNAG 1 cut(s) 95
Eco47I GGWCC 2 cut(s) 169, 284
EcoO109I RGGNCCY 2 cut(s) 169, 284
FaiI YATR 1 cut(s) 164
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FaqI GGGAC 1 cut(s) 297
FspBI CTAG 1 cut(s) 258
HphI GGTGA 1 cut(s) 59
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 1 cut(s) 252
Hpy188III TCNNGA 1 cut(s) 107
Hpy8I GTNNAC 1 cut(s) 121
HpyAV CCTTC 1 cut(s) 44
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4V TGCA 3 cut(s) 38, 121, 204
HpyF3I CTNAG 1 cut(s) 95
LpnPI CCDG 4 cut(s) 120, 230, 283, 300
LweI GCATC 1 cut(s) 191
MaeI CTAG 1 cut(s) 258
MboII GAAGA 2 cut(s) 95, 126
MhlI GDGCHC 1 cut(s) 123
MluCI AATT 1 cut(s) 328
MnlI CCTC 6 cut(s) 50, 53, 148, 160, 182, 246
MseI TTAA 1 cut(s) 144
MspA1I CMGCKG 1 cut(s) 186
NlaIV GGNNCC 2 cut(s) 12, 285
PpuMI RGGWCCY 2 cut(s) 169, 284
Psp5II RGGWCCY 2 cut(s) 169, 284
PspN4I GGNNCC 2 cut(s) 12, 285
PspPI GGNCC 2 cut(s) 169, 284
PspPPI RGGWCCY 2 cut(s) 169, 284
PvuII CAGCTG 1 cut(s) 186
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
SaqAI TTAA 1 cut(s) 144
Sau96I GGNCC 2 cut(s) 169, 284
ScaI AGTACT 1 cut(s) 277
SduI GDGCHC 1 cut(s) 123
SetI ASST 8 cut(s) 55, 64, 154, 174, 188, 272, 289, 322
SfaNI GCATC 1 cut(s) 191
SfcI CTRYAG 1 cut(s) 271
SinI GGWCC 2 cut(s) 169, 284
Sse9I AATT 1 cut(s) 328
SspMI CTAG 1 cut(s) 258
TaaI ACNGT 1 cut(s) 178
TasI AATT 1 cut(s) 328
TatI WGTACW 1 cut(s) 275
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TscAI CASTG 1 cut(s) 181
TspRI CASTG 1 cut(s) 181
VneI GTGCAC 1 cut(s) 119
VpaK11BI GGWCC 2 cut(s) 169, 284
XcmI CCANNNNNNNNNTGG 1 cut(s) 22
XspI CTAG 1 cut(s) 258
ZrmI AGTACT 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.