Rh3DG214500

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Forward (+)
19771785 .. 19772432
648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG214500.1

Sequence Viewer

Length: 459 bp
ATGAAGGGACTGTATAAGAGAGGAATCATACCACCTCTGTTTCGTAATACTTGTTATTTGTGTATGCATATTGGCAGCTTTGTTAATGACCTAGTCCCATGGATGGTCTTTCTTTTCCGAAGAATGCCTAATTTGTGTACCTTGTACATCAAGTCTACTCCACCTCTATCTGACTGCAATTCTCATCATACATGCGGGTTCTATATGGAATACTGGAAGCAGCAAAACTTCGGTTTTATACTTGAGCTTAATGAGGTTACCATTGAGCTTTCCAGAGGACTAAATGGAATTGAGATAGCAAGGTATATGCTCGAGCATGCTCAGAATTTGAAGAAAATGGTCATAGTTTGTTTACCGCAGCAGTCTGGTTTTGTTAAAAGGATGTTAGATAAAAGTAAGATGATTTCGAATGGCACAGTTGTGTTCAAGGAAAATCGACAAGAGAGAAAGCTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

152

Amino Acids

17.83

Weight (kDa)

9.43

Isoelectric Point (pI)

59.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 155
AciI CCGC 2 cut(s) 195, 356
AcsI RAATTY 1 cut(s) 325
AfaI GTAC 2 cut(s) 139, 146
AfiI CCNNNNNNNGG 1 cut(s) 103
AgsI TTSAA 2 cut(s) 331, 427
AleI CACNNNNGTG 1 cut(s) 419
AluBI AGCT 4 cut(s) 78, 247, 268, 451
AluI AGCT 4 cut(s) 78, 247, 268, 451
Ama87I CYCGRG 1 cut(s) 311
ApeKI GCWGC 3 cut(s) 75, 220, 358
ApoI RAATTY 1 cut(s) 325
AsuII TTCGAA 1 cut(s) 407
AvaI CYCGRG 1 cut(s) 311
BbvI GCAGC 3 cut(s) 87, 232, 370
BccI CCATC 1 cut(s) 97
BfaI CTAG 1 cut(s) 92
BisI GCNGC 3 cut(s) 76, 221, 359
BlsI GCNGC 3 cut(s) 77, 222, 360
BmeT110I CYCGRG 1 cut(s) 311
Bpu14I TTCGAA 1 cut(s) 407
BpuEI CTTGAG 1 cut(s) 263
BsaJI CCNNGG 1 cut(s) 98
Bsc4I CCNNNNNNNGG 1 cut(s) 103
Bse1I ACTGG 1 cut(s) 218
BseDI CCNNGG 1 cut(s) 98
BseGI GGATG 2 cut(s) 108, 387
BseLI CCNNNNNNNGG 1 cut(s) 103
BseMII CTCAG 1 cut(s) 335
BseNI ACTGG 1 cut(s) 218
BseXI GCAGC 3 cut(s) 87, 232, 370
BsiHKCI CYCGRG 1 cut(s) 311
BslFI GGGAC 2 cut(s) 21, 80
BslI CCNNNNNNNGG 1 cut(s) 103
BsmFI GGGAC 2 cut(s) 21, 80
BsmI GAATGC 1 cut(s) 129
BsoBI CYCGRG 1 cut(s) 311
Bsp119I TTCGAA 1 cut(s) 407
Bsp1407I TGTACA 1 cut(s) 144
Bsp19I CCATGG 1 cut(s) 98
BspACI CCGC 2 cut(s) 195, 356
BspCNI CTCAG 1 cut(s) 334
BspT104I TTCGAA 1 cut(s) 407
BsrGI TGTACA 1 cut(s) 144
BsrI ACTGG 1 cut(s) 218
BssECI CCNNGG 1 cut(s) 98
BssT1I CCWWGG 1 cut(s) 98
Bst4CI ACNGT 2 cut(s) 12, 418
BstAUI TGTACA 1 cut(s) 144
BstBI TTCGAA 1 cut(s) 407
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 1 cut(s) 321
BstDSI CCRYGG 1 cut(s) 98
BstEII GGTNACC 1 cut(s) 256
BstF5I GGATG 2 cut(s) 108, 387
BstNSI RCATGY 2 cut(s) 195, 320
BstPI GGTNACC 1 cut(s) 256
BstV1I GCAGC 3 cut(s) 87, 232, 370
BtgI CCRYGG 1 cut(s) 98
BtsCI GGATG 2 cut(s) 108, 387
Cac8I GCNNGC 1 cut(s) 318
Csp6I GTAC 2 cut(s) 138, 145
CviAII CATG 3 cut(s) 99, 192, 317
CviJI RGCY 4 cut(s) 78, 247, 268, 451
CviKI_1 RGCY 4 cut(s) 78, 247, 268, 451
CviQI GTAC 2 cut(s) 138, 145
DdeI CTNAG 1 cut(s) 321
Eco130I CCWWGG 1 cut(s) 98
Eco88I CYCGRG 1 cut(s) 311
Eco91I GGTNACC 1 cut(s) 256
EcoO65I GGTNACC 1 cut(s) 256
EcoT14I CCWWGG 1 cut(s) 98
EcoT22I ATGCAT 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 98
FaeI CATG 3 cut(s) 102, 195, 320
FaqI GGGAC 2 cut(s) 21, 80
FatI CATG 3 cut(s) 98, 191, 316
FauI CCCGC 1 cut(s) 188
FblI GTMKAC 1 cut(s) 155
Fnu4HI GCNGC 3 cut(s) 76, 221, 359
FokI GGATG 2 cut(s) 115, 394
Fsp4HI GCNGC 3 cut(s) 76, 221, 359
FspBI CTAG 1 cut(s) 92
GluI GCNGC 3 cut(s) 76, 221, 359
Hin1II CATG 3 cut(s) 102, 195, 320
HinfI GANTC 1 cut(s) 24
Hpy166II GTNNAC 3 cut(s) 138, 156, 353
Hpy188I TCNGA 3 cut(s) 119, 172, 324
Hpy188III TCNNGA 1 cut(s) 273
Hpy8I GTNNAC 3 cut(s) 138, 156, 353
HpyCH4III ACNGT 2 cut(s) 12, 418
HpyCH4V TGCA 2 cut(s) 67, 177
HpyF3I CTNAG 1 cut(s) 321
Hsp92II CATG 3 cut(s) 102, 195, 320
LpnPI CCDG 4 cut(s) 199, 286, 351, 437
Lsp1109I GCAGC 3 cut(s) 87, 232, 370
MaeI CTAG 1 cut(s) 92
MaeIII GTNAC 1 cut(s) 256
MboII GAAGA 2 cut(s) 132, 343
MluCI AATT 4 cut(s) 130, 178, 288, 325
MnlI CCTC 5 cut(s) 14, 45, 174, 247, 269
Mph1103I ATGCAT 1 cut(s) 69
MseI TTAA 3 cut(s) 84, 249, 375
MslI CAYNNNNRTG 1 cut(s) 419
Mva1269I GAATGC 1 cut(s) 129
NcoI CCATGG 1 cut(s) 98
NlaIII CATG 3 cut(s) 102, 195, 320
NsiI ATGCAT 1 cut(s) 69
NspI RCATGY 2 cut(s) 195, 320
NspV TTCGAA 1 cut(s) 407
OliI CACNNNNGTG 1 cut(s) 419
PaeI GCATGC 1 cut(s) 320
PaeR7I CTCGAG 1 cut(s) 311
PctI GAATGC 1 cut(s) 129
PfeI GAWTC 1 cut(s) 24
PflFI GACNNNGTC 1 cut(s) 92
PkrI GCNGC 3 cut(s) 77, 222, 360
PspEI GGTNACC 1 cut(s) 256
PspXI VCTCGAGB 1 cut(s) 311
PsyI GACNNNGTC 1 cut(s) 92
RsaI GTAC 2 cut(s) 139, 146
RsaNI GTAC 2 cut(s) 138, 145
RseI CAYNNNNRTG 1 cut(s) 419
SaqAI TTAA 3 cut(s) 84, 249, 375
SatI GCNGC 3 cut(s) 76, 221, 359
Sfr274I CTCGAG 1 cut(s) 311
SfuI TTCGAA 1 cut(s) 407
SlaI CTCGAG 1 cut(s) 311
SmiMI CAYNNNNRTG 1 cut(s) 419
SmlI CTYRAG 2 cut(s) 242, 311
SmoI CTYRAG 2 cut(s) 242, 311
SphI GCATGC 1 cut(s) 320
Sse9I AATT 4 cut(s) 130, 178, 288, 325
SsiI CCGC 2 cut(s) 195, 356
SspMI CTAG 1 cut(s) 92
StyI CCWWGG 1 cut(s) 98
TaaI ACNGT 2 cut(s) 12, 418
TaqI TCGA 3 cut(s) 312, 407, 436
TasI AATT 4 cut(s) 130, 178, 288, 325
TatI WGTACW 1 cut(s) 144
TfiI GAWTC 1 cut(s) 24
Tru1I TTAA 3 cut(s) 84, 249, 375
Tru9I TTAA 3 cut(s) 84, 249, 375
TseI GCWGC 3 cut(s) 75, 220, 358
TspDTI ATGAA 1 cut(s) 17
Tth111I GACNNNGTC 1 cut(s) 92
XapI RAATTY 1 cut(s) 325
XceI RCATGY 2 cut(s) 195, 320
XhoI CTCGAG 1 cut(s) 311
XmiI GTMKAC 1 cut(s) 155
XspI CTAG 1 cut(s) 92
Zsp2I ATGCAT 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.