Rmu_sc0004507.1_g000023

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004507.1
OG0000241
Physical Location & Seq
Reverse (-)
112698 .. 114356
1659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004507.1_g000023.1.cds

Sequence Viewer

Length: 1473 bp
atggctaatgcaagttgtgaagctgaaggaggaggttgtcttaaggatgagattatggtaggaagattcgttaatcttccagatcaagttgtgcatcacatcatttctttcctagctatcactgacctcactcgtttcggctgtgtgtccaagaagtgtagagaactttatctaacaagtccatccttgaagtttgatgaattttcgttggctaatacatcctcatgttataaacggatgaatttgttgaggtctttggataagttcttgattcatcgtggggagaataagatacaccaattttgtattcgttgggttccccccgagaactttgaccatgaaacaccatgcttttgtggttgtaatgagaagtctggaacgatggcgtggatacagtatgcagtaaggtgtaaagtggaagtgcttgatcttgagatctctatatttgagaaggcgatgccattagcatttccatttttcatccttcagtgtaaatctttgaggtctctatcgctggacatgaattgtatgattcatacaccctctttcaccgttttctctagtctcaagtgcttggagctgaaaaatgttagaatattggatgagtcatttttcaaatggatgtcaaattcctgcaaatgcattgaggaattagatcttgatgatgtccatggaattagaaatatctacattgagagctcttctttgaaatcatttaaatttgggtcttcaaatcagactcgcttctgtcatcttaaaatctctggtgagaaactcatatccatatttgtcttctggagtttttattcatctctcaacaaatcgtttagtctttctgctccaaatctagaaagattttattggtttgggaatttgttggatcactcaaatctcggagaactggtatgtttagaagatgttggattttatataaagtctgaagaagatgatattgactatatagagcatgtttacactacatacaagcgctttgttgttctaaatgaagaggccatgaagggactgtataagagaggaatcataccacctctgtttcgtaatacttgttatttgtgtatgcatattggcagctttgttaatgacctagtcccatggatggtctttcttttccgaagaatgcctaatttgtgtaccttgtacatcaagtctactccacctctatctgactgcaattctcatcatacatgtgggttctatatggactactggaagcagcagaacttcggttttatacttgagcttaatgaggttaccattgagctttccaaaggactaaatggaattgagttagcaaggtatatgctcgagcatgctcagaatttgaagaaaatggtcatagtttgtttaccgcagcagtctggtcttgttaaaaggatgttagataaaagtaagatgatttcgaatggcacagttgtgttcaaggaaaatcgacaagaaagaaagctggtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

490

Amino Acids

56.79

Weight (kDa)

7.73

Isoelectric Point (pI)

52.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 231
AccI GTMKAC 1 cut(s) 1169
AciI CCGC 1 cut(s) 1370
AclWI GGATC 1 cut(s) 888
AcsI RAATTY 6 cut(s) 200, 241, 628, 719, 871, 1339
AcuI CTGAAG 3 cut(s) 45, 470, 960
AfaI GTAC 2 cut(s) 1153, 1160
AfeI AGCGCT 1 cut(s) 989
AfiI CCNNNNNNNGG 1 cut(s) 1117
AflII CTTAAG 1 cut(s) 41
AflIII ACRYGT 1 cut(s) 1205
AgsI TTSAA 6 cut(s) 190, 616, 709, 732, 1345, 1441
AjuI GAANNNNNNNTTGG 2 cut(s) 291, 323
AleI CACNNNNGTG 1 cut(s) 1433
AluBI AGCT 8 cut(s) 23, 116, 580, 699, 1092, 1261, 1282, 1465
AluI AGCT 8 cut(s) 23, 116, 580, 699, 1092, 1261, 1282, 1465
Alw21I GWGCWC 1 cut(s) 701
Alw26I GTCTC 2 cut(s) 510, 569
AlwI GGATC 1 cut(s) 888
Ama87I CYCGRG 2 cut(s) 323, 1325
Aor51HI AGCGCT 1 cut(s) 989
AoxI GGCC 1 cut(s) 1011
ApeKI GCWGC 3 cut(s) 1089, 1234, 1372
ApoI RAATTY 6 cut(s) 200, 241, 628, 719, 871, 1339
AspLEI GCGC 1 cut(s) 990
AsuHPI GGTGA 2 cut(s) 541, 779
AsuII TTCGAA 1 cut(s) 1421
AvaI CYCGRG 2 cut(s) 323, 1325
BanII GRGCYC 1 cut(s) 701
BbsI GAAGAC 2 cut(s) 720, 784
Bbv12I GWGCWC 1 cut(s) 701
BbvI GCAGC 3 cut(s) 1101, 1246, 1384
BccI CCATC 3 cut(s) 190, 376, 1111
BciVI GTATCC 1 cut(s) 384
BcoDI GTCTC 2 cut(s) 510, 569
BfaI CTAG 4 cut(s) 113, 561, 848, 1106
BfoI RGCGCY 1 cut(s) 991
BfrI CTTAAG 1 cut(s) 41
BfuI GTATCC 1 cut(s) 384
BglII AGATCT 2 cut(s) 435, 655
BisI GCNGC 3 cut(s) 1090, 1235, 1373
BlsI GCNGC 3 cut(s) 1091, 1236, 1374
BmeT110I CYCGRG 2 cut(s) 323, 1325
BmiI GGNNCC 1 cut(s) 318
BmsI GCATC 2 cut(s) 103, 447
BpiI GAAGAC 2 cut(s) 720, 784
BpmI CTGGAG 1 cut(s) 817
Bpu14I TTCGAA 1 cut(s) 1421
BpuEI CTTGAG 3 cut(s) 452, 551, 1277
BsaI GGTCTC 1 cut(s) 510
BsaJI CCNNGG 2 cut(s) 670, 1112
BsaXI ACNNNNNCTCC 2 cut(s) 888, 918
Bsc4I CCNNNNNNNGG 1 cut(s) 1117
Bse1I ACTGG 2 cut(s) 906, 1232
BseDI CCNNGG 2 cut(s) 670, 1112
BseGI GGATG 9 cut(s) 52, 182, 218, 243, 480, 607, 627, 1122, 1401
BseLI CCNNNNNNNGG 1 cut(s) 1117
BseMII CTCAG 1 cut(s) 1349
BseNI ACTGG 2 cut(s) 906, 1232
BseRI GAGGAG 1 cut(s) 45
BseXI GCAGC 3 cut(s) 1101, 1246, 1384
BshFI GGCC 1 cut(s) 1013
BsiHKAI GWGCWC 1 cut(s) 701
BsiHKCI CYCGRG 2 cut(s) 323, 1325
BslFI GGGAC 2 cut(s) 1035, 1094
BslI CCNNNNNNNGG 1 cut(s) 1117
BsmAI GTCTC 2 cut(s) 510, 569
BsmFI GGGAC 2 cut(s) 1035, 1094
BsmI GAATGC 1 cut(s) 1143
BsnI GGCC 1 cut(s) 1013
Bso31I GGTCTC 1 cut(s) 510
BsoBI CYCGRG 2 cut(s) 323, 1325
Bsp119I TTCGAA 1 cut(s) 1421
Bsp1286I GDGCHC 1 cut(s) 701
Bsp1407I TGTACA 1 cut(s) 1158
Bsp143I GATC 5 cut(s) 82, 427, 435, 655, 880
Bsp19I CCATGG 2 cut(s) 670, 1112
BspACI CCGC 1 cut(s) 1370
BspANI GGCC 1 cut(s) 1013
BspCNI CTCAG 1 cut(s) 1348
BspLI GGNNCC 1 cut(s) 318
BspPI GGATC 1 cut(s) 888
BspQI GCTCTTC 1 cut(s) 706
BspT104I TTCGAA 1 cut(s) 1421
BspTI CTTAAG 1 cut(s) 41
BspTNI GGTCTC 1 cut(s) 510
BsrGI TGTACA 1 cut(s) 1158
BsrI ACTGG 2 cut(s) 906, 1232
BssECI CCNNGG 2 cut(s) 670, 1112
BssMI GATC 5 cut(s) 82, 427, 435, 655, 880
BssT1I CCWWGG 2 cut(s) 670, 1112
Bst4CI ACNGT 4 cut(s) 396, 553, 1026, 1432
Bst6I CTCTTC 2 cut(s) 706, 1002
BstAFI CTTAAG 1 cut(s) 41
BstAUI TGTACA 1 cut(s) 1158
BstBI TTCGAA 1 cut(s) 1421
BstC8I GCNNGC 1 cut(s) 1332
BstDEI CTNAG 1 cut(s) 1335
BstDSI CCRYGG 2 cut(s) 670, 1112
BstEII GGTNACC 1 cut(s) 1270
BstF5I GGATG 9 cut(s) 52, 182, 218, 243, 480, 607, 627, 1122, 1401
BstH2I RGCGCY 1 cut(s) 991
BstHHI GCGC 1 cut(s) 990
BstKTI GATC 5 cut(s) 85, 430, 438, 658, 883
BstMAI GTCTC 2 cut(s) 510, 569
BstMBI GATC 5 cut(s) 82, 427, 435, 655, 880
BstNSI RCATGY 3 cut(s) 971, 1209, 1334
BstPI GGTNACC 1 cut(s) 1270
BstV1I GCAGC 3 cut(s) 1101, 1246, 1384
BstV2I GAAGAC 2 cut(s) 720, 784
BstX2I RGATCY 2 cut(s) 435, 655
BstYI RGATCY 2 cut(s) 435, 655
BsuI GTATCC 1 cut(s) 384
BsuRI GGCC 1 cut(s) 1013
BtgI CCRYGG 2 cut(s) 670, 1112
BtgZI GCGATG 1 cut(s) 470
BtsCI GGATG 9 cut(s) 52, 182, 218, 243, 480, 607, 627, 1122, 1401
BtsIMutI CAGTG 2 cut(s) 120, 494
Cac8I GCNNGC 1 cut(s) 1332
CfoI GCGC 1 cut(s) 990
Csp6I GTAC 2 cut(s) 1152, 1159
CviQI GTAC 2 cut(s) 1152, 1159
DdeI CTNAG 1 cut(s) 1335
DpnI GATC 5 cut(s) 84, 429, 437, 657, 882
DpnII GATC 5 cut(s) 82, 427, 435, 655, 880
DraI TTTAAA 1 cut(s) 718
Eam1104I CTCTTC 2 cut(s) 706, 1002
EarI CTCTTC 2 cut(s) 706, 1002
Ecl136II GAGCTC 1 cut(s) 699
Eco130I CCWWGG 2 cut(s) 670, 1112
Eco24I GRGCYC 1 cut(s) 701
Eco31I GGTCTC 1 cut(s) 510
Eco47III AGCGCT 1 cut(s) 989
Eco53kI GAGCTC 1 cut(s) 699
Eco57I CTGAAG 3 cut(s) 45, 470, 960
Eco88I CYCGRG 2 cut(s) 323, 1325
Eco91I GGTNACC 1 cut(s) 1270
EcoICRI GAGCTC 1 cut(s) 699
EcoO65I GGTNACC 1 cut(s) 1270
EcoT14I CCWWGG 2 cut(s) 670, 1112
EcoT22I ATGCAT 2 cut(s) 644, 1083
EcoT38I GRGCYC 1 cut(s) 701
ErhI CCWWGG 2 cut(s) 670, 1112
FaqI GGGAC 2 cut(s) 1035, 1094
FblI GTMKAC 1 cut(s) 1169
Fnu4HI GCNGC 3 cut(s) 1090, 1235, 1373
FokI GGATG 9 cut(s) 59, 169, 205, 250, 467, 614, 634, 1129, 1408
FriOI GRGCYC 1 cut(s) 701
Fsp4HI GCNGC 3 cut(s) 1090, 1235, 1373
FspBI CTAG 4 cut(s) 113, 561, 848, 1106
GlaI GCGC 1 cut(s) 989
GluI GCNGC 3 cut(s) 1090, 1235, 1373
GsuI CTGGAG 1 cut(s) 817
HaeII RGCGCY 1 cut(s) 991
HaeIII GGCC 1 cut(s) 1013
HhaI GCGC 1 cut(s) 990
Hin6I GCGC 1 cut(s) 988
HinP1I GCGC 1 cut(s) 988
HinfI GANTC 6 cut(s) 66, 271, 532, 605, 739, 1038
HphI GGTGA 2 cut(s) 541, 779
Hpy166II GTNNAC 4 cut(s) 973, 1152, 1170, 1367
Hpy188I TCNGA 6 cut(s) 738, 896, 940, 1133, 1186, 1338
Hpy188III TCNNGA 7 cut(s) 80, 268, 375, 431, 659, 796, 848
Hpy8I GTNNAC 4 cut(s) 973, 1152, 1170, 1367
HpyAV CCTTC 4 cut(s) 20, 445, 494, 1012
HpyCH4III ACNGT 4 cut(s) 396, 553, 1026, 1432
HpyCH4V TGCA 7 cut(s) 11, 94, 401, 636, 642, 1081, 1191
HpyF3I CTNAG 1 cut(s) 1335
HspAI GCGC 1 cut(s) 988
Kzo9I GATC 5 cut(s) 82, 427, 435, 655, 880
LguI GCTCTTC 1 cut(s) 706
LmnI GCTCC 2 cut(s) 577, 844
Lsp1109I GCAGC 3 cut(s) 1101, 1246, 1384
LweI GCATC 2 cut(s) 103, 447
MaeI CTAG 4 cut(s) 113, 561, 848, 1106
MaeIII GTNAC 1 cut(s) 1270
MalI GATC 5 cut(s) 84, 429, 437, 657, 882
MboI GATC 5 cut(s) 82, 427, 435, 655, 880
MflI RGATCY 2 cut(s) 435, 655
MhlI GDGCHC 1 cut(s) 701
MlyI GAGTC 2 cut(s) 614, 733
MmeI TCCRAC 2 cut(s) 858, 901
Mph1103I ATGCAT 2 cut(s) 644, 1083
MseI TTAA 7 cut(s) 42, 72, 717, 756, 1098, 1263, 1389
MslI CAYNNNNRTG 3 cut(s) 223, 1206, 1433
MspCI CTTAAG 1 cut(s) 41
Mva1269I GAATGC 1 cut(s) 1143
NcoI CCATGG 2 cut(s) 670, 1112
NdeII GATC 5 cut(s) 82, 427, 435, 655, 880
NlaIV GGNNCC 1 cut(s) 318
NsiI ATGCAT 2 cut(s) 644, 1083
NspI RCATGY 3 cut(s) 971, 1209, 1334
NspV TTCGAA 1 cut(s) 1421
OliI CACNNNNGTG 1 cut(s) 1433
PaeI GCATGC 1 cut(s) 1334
PaeR7I CTCGAG 1 cut(s) 1325
PciI ACATGT 1 cut(s) 1205
PciSI GCTCTTC 1 cut(s) 706
PctI GAATGC 1 cut(s) 1143
PfeI GAWTC 4 cut(s) 66, 271, 532, 1038
PflFI GACNNNGTC 1 cut(s) 1106
PkrI GCNGC 3 cut(s) 1091, 1236, 1374
PleI GAGTC 2 cut(s) 613, 733
PpsI GAGTC 2 cut(s) 613, 733
PscI ACATGT 1 cut(s) 1205
PsiI TTATAA 1 cut(s) 231
Psp124BI GAGCTC 1 cut(s) 701
PspEI GGTNACC 1 cut(s) 1270
PspN4I GGNNCC 1 cut(s) 318
PspXI VCTCGAGB 1 cut(s) 1325
PsuI RGATCY 2 cut(s) 435, 655
PsyI GACNNNGTC 1 cut(s) 1106
RsaI GTAC 2 cut(s) 1153, 1160
RsaNI GTAC 2 cut(s) 1152, 1159
RseI CAYNNNNRTG 3 cut(s) 223, 1206, 1433
SacI GAGCTC 1 cut(s) 701
SapI GCTCTTC 1 cut(s) 706
SaqAI TTAA 7 cut(s) 42, 72, 717, 756, 1098, 1263, 1389
SatI GCNGC 3 cut(s) 1090, 1235, 1373
Sau3AI GATC 5 cut(s) 82, 427, 435, 655, 880
SchI GAGTC 2 cut(s) 614, 733
SduI GDGCHC 1 cut(s) 701
SfaNI GCATC 2 cut(s) 103, 447
Sfr274I CTCGAG 1 cut(s) 1325
SfuI TTCGAA 1 cut(s) 1421
SlaI CTCGAG 1 cut(s) 1325
SmiI ATTTAAAT 1 cut(s) 718
SmiMI CAYNNNNRTG 3 cut(s) 223, 1206, 1433
SmlI CTYRAG 5 cut(s) 41, 431, 566, 1256, 1325
SmoI CTYRAG 5 cut(s) 41, 431, 566, 1256, 1325
SphI GCATGC 1 cut(s) 1334
SsiI CCGC 1 cut(s) 1370
SspI AATATT 1 cut(s) 597
SspMI CTAG 4 cut(s) 113, 561, 848, 1106
SstI GAGCTC 1 cut(s) 701
StyI CCWWGG 2 cut(s) 670, 1112
SwaI ATTTAAAT 1 cut(s) 718
TaaI ACNGT 4 cut(s) 396, 553, 1026, 1432
TaqI TCGA 3 cut(s) 1326, 1421, 1450
TatI WGTACW 1 cut(s) 1158
TfiI GAWTC 4 cut(s) 66, 271, 532, 1038
Tru1I TTAA 7 cut(s) 42, 72, 717, 756, 1098, 1263, 1389
Tru9I TTAA 7 cut(s) 42, 72, 717, 756, 1098, 1263, 1389
TscAI CASTG 2 cut(s) 127, 494
TseI GCWGC 3 cut(s) 1089, 1234, 1372
TspGWI ACGGA 1 cut(s) 250
TspRI CASTG 2 cut(s) 127, 494
Tth111I GACNNNGTC 1 cut(s) 1106
Vha464I CTTAAG 1 cut(s) 41
XapI RAATTY 6 cut(s) 200, 241, 628, 719, 871, 1339
XbaI TCTAGA 1 cut(s) 847
XceI RCATGY 3 cut(s) 971, 1209, 1334
XhoI CTCGAG 1 cut(s) 1325
XmiI GTMKAC 1 cut(s) 1169
XspI CTAG 4 cut(s) 113, 561, 848, 1106
Zsp2I ATGCAT 2 cut(s) 644, 1083
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.