Rh3AG188700

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
Physical Location & Seq
Forward (+)
18106669 .. 18107354
686 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG188700.1

Sequence Viewer

Length: 468 bp
ATGTACAAGGGAGGTTCCATGTCAGCCCCATTAGAAAATGTTCATTACTTGTCTATTCATATTGGAAGTTTTCTTGACATCCTAGTCCTCCCAATGGCTTTGCTTCTTCAAGGAATGCCTAATTTGACTACTTTAGACATGAAGTCTGACCCCTTCTTCCTTGACCCAAATACTGATTGTTCTGGGTTTAACATGGGATTTTGGAAGGTGCAAAGTCTTGATTTTGTTCATCAACTTAGAGAAGTAACCATTGAGCTATCCAGTGGATCCAATGGAATCGAGTTTGCGAGGTATATCCTTGAGCATGCTCAGAATTTGAACAAAATGACGATTGTGCATTCACCTCATCAGTCTAATGCTATAAGGGCGTTAAAGAAAAGCAAGATGGCTGCCAATGCCAAAGTTGTCTATCTGGAAGATCAAAACAGAGGAACTGAAAAGCAAAGAGGAAGAAGGGTTGCCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

155

Amino Acids

17.45

Weight (kDa)

9.1

Isoelectric Point (pI)

54.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 83
AclWI GGATC 2 cut(s) 261, 274
AcsI RAATTY 1 cut(s) 313
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 94
AgsI TTSAA 2 cut(s) 110, 319
AhdI GACNNNNNGTC 1 cut(s) 142
AluBI AGCT 1 cut(s) 256
AluI AGCT 1 cut(s) 256
AlwI GGATC 2 cut(s) 261, 274
ApeKI GCWGC 1 cut(s) 389
ApoI RAATTY 1 cut(s) 313
Asp700I GAANNNNTTC 1 cut(s) 39
AsuHPI GGTGA 1 cut(s) 333
BamHI GGATCC 1 cut(s) 266
BbvI GCAGC 1 cut(s) 376
BccI CCATC 1 cut(s) 379
BfaI CTAG 1 cut(s) 83
BisI GCNGC 1 cut(s) 390
BlsI GCNGC 1 cut(s) 391
BmeRI GACNNNNNGTC 1 cut(s) 142
BmiI GGNNCC 2 cut(s) 16, 268
BpuEI CTTGAG 1 cut(s) 320
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse1I ACTGG 1 cut(s) 261
BseGI GGATG 1 cut(s) 78
BseLI CCNNNNNNNGG 1 cut(s) 94
BseMII CTCAG 1 cut(s) 323
BseNI ACTGG 1 cut(s) 261
BseXI GCAGC 1 cut(s) 376
BslI CCNNNNNNNGG 1 cut(s) 94
BsmI GAATGC 2 cut(s) 120, 337
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 2 cut(s) 266, 418
BspCNI CTCAG 1 cut(s) 322
BspLI GGNNCC 2 cut(s) 16, 268
BspPI GGATC 2 cut(s) 261, 274
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 1 cut(s) 261
BssMI GATC 2 cut(s) 266, 418
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 2 cut(s) 236, 309
BstF5I GGATG 1 cut(s) 78
BstKTI GATC 2 cut(s) 269, 421
BstMBI GATC 2 cut(s) 266, 418
BstMWI GCNNNNNNNGC 2 cut(s) 365, 395
BstNSI RCATGY 1 cut(s) 308
BstV1I GCAGC 1 cut(s) 376
BstX2I RGATCY 1 cut(s) 266
BstYI RGATCY 1 cut(s) 266
BtsCI GGATG 1 cut(s) 78
BtsIMutI CAGTG 1 cut(s) 268
Cac8I GCNNGC 1 cut(s) 306
Csp6I GTAC 1 cut(s) 4
CviAII CATG 4 cut(s) 19, 139, 193, 305
CviJI RGCY 4 cut(s) 26, 98, 256, 389
CviKI_1 RGCY 4 cut(s) 26, 98, 256, 389
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 2 cut(s) 236, 309
DpnI GATC 2 cut(s) 268, 420
DpnII GATC 2 cut(s) 266, 418
DrdI GACNNNNNNGTC 1 cut(s) 83
DriI GACNNNNNGTC 1 cut(s) 142
DseDI GACNNNNNNGTC 1 cut(s) 83
Eam1105I GACNNNNNGTC 1 cut(s) 142
FaeI CATG 4 cut(s) 22, 142, 196, 308
FaiI YATR 7 cut(s) 20, 60, 140, 194, 294, 306, 362
FatI CATG 4 cut(s) 18, 138, 192, 304
Fnu4HI GCNGC 1 cut(s) 390
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 1 cut(s) 390
FspBI CTAG 1 cut(s) 83
GluI GCNGC 1 cut(s) 390
Hin1II CATG 4 cut(s) 22, 142, 196, 308
HinfI GANTC 1 cut(s) 276
HphI GGTGA 1 cut(s) 333
Hpy188I TCNGA 2 cut(s) 148, 312
Hpy188III TCNNGA 3 cut(s) 74, 218, 413
HpyAV CCTTC 3 cut(s) 163, 199, 447
HpyCH4V TGCA 2 cut(s) 211, 337
HpyF10VI GCNNNNNNNGC 2 cut(s) 365, 395
HpyF3I CTNAG 2 cut(s) 236, 309
Hsp92II CATG 4 cut(s) 22, 142, 196, 308
Kzo9I GATC 2 cut(s) 266, 418
LpnPI CCDG 3 cut(s) 168, 274, 398
Lsp1109I GCAGC 1 cut(s) 376
MaeI CTAG 1 cut(s) 83
MaeIII GTNAC 1 cut(s) 244
MalI GATC 2 cut(s) 268, 420
MboI GATC 2 cut(s) 266, 418
MboII GAAGA 4 cut(s) 98, 148, 428, 462
MflI RGATCY 1 cut(s) 266
MluCI AATT 2 cut(s) 121, 313
MnlI CCTC 6 cut(s) 5, 98, 282, 354, 422, 440
MroXI GAANNNNTTC 1 cut(s) 39
MseI TTAA 2 cut(s) 189, 371
Mva1269I GAATGC 2 cut(s) 120, 337
MwoI GCNNNNNNNGC 2 cut(s) 365, 395
NdeII GATC 2 cut(s) 266, 418
NlaIII CATG 4 cut(s) 22, 142, 196, 308
NlaIV GGNNCC 2 cut(s) 16, 268
NspI RCATGY 1 cut(s) 308
PaeI GCATGC 1 cut(s) 308
PctI GAATGC 2 cut(s) 120, 337
PdmI GAANNNNTTC 1 cut(s) 39
PfeI GAWTC 1 cut(s) 276
PkrI GCNGC 1 cut(s) 391
PspN4I GGNNCC 2 cut(s) 16, 268
PsuI RGATCY 1 cut(s) 266
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SaqAI TTAA 2 cut(s) 189, 371
SatI GCNGC 1 cut(s) 390
Sau3AI GATC 2 cut(s) 266, 418
SetI ASST 5 cut(s) 16, 210, 258, 293, 346
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
SphI GCATGC 1 cut(s) 308
Sse9I AATT 2 cut(s) 121, 313
SspMI CTAG 1 cut(s) 83
TaqI TCGA 1 cut(s) 279
TasI AATT 2 cut(s) 121, 313
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 1 cut(s) 276
Tru1I TTAA 2 cut(s) 189, 371
Tru9I TTAA 2 cut(s) 189, 371
TscAI CASTG 1 cut(s) 268
TseI GCWGC 1 cut(s) 389
TspDTI ATGAA 4 cut(s) 32, 47, 155, 218
TspRI CASTG 1 cut(s) 268
XapI RAATTY 1 cut(s) 313
XceI RCATGY 1 cut(s) 308
XmnI GAANNNNTTC 1 cut(s) 39
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.