Rorug03G0139300

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000241
Physical Location & Seq
Reverse (-)
11449328 .. 11450289
962 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0139300.1

Sequence Viewer

Length: 486 bp
ATGTTTCTAATCAGGTCTTTAAATCACTCATCAAAGAGAGAGTTTGGAGAGATAGAGATGGGAGATAGAGCTGGTGTACTGGAGGTGAAGCTGATTGAAGCAAGAGACCTCAAAAACATGGATTTTGCTGTGAAGATGAACACATACGTTGTGATCGAATATGGAAATCAAAGGCATACAAGCTGCGTTGCTAAAGGAAAAGGAACGAAACCAGTGTGGAATGAAACATTTAGATTCGAGGCGGAGTATCCGGGTGGGGATGAAAATCACAAGTACATGCTTCATTTTCGTATCATGAATACACATAAGATCTTGGACCACGACGTATTTGTTGGCCAATCTACAATTTATGTGAAGGATTTGATAGCTTCGGGCACGGACAGAGGGAATGCTGAACTTCGAAGCGCCAAGTATAGAGTTGTTCTTCAAGACAAGACTTATGCCGGAGAGATCTCTGTTGCTTTATCTTTTTCCATAAACCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

161

Amino Acids

18.4

Weight (kDa)

7.86

Isoelectric Point (pI)

38.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 25 - 124 5.6e-18 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 242
AcoI YGGCCR 1 cut(s) 334
AfaI GTAC 2 cut(s) 78, 275
AgsI TTSAA 2 cut(s) 98, 428
AluBI AGCT 4 cut(s) 71, 91, 183, 368
AluI AGCT 4 cut(s) 71, 91, 183, 368
Alw26I GTCTC 1 cut(s) 99
AoxI GGCC 1 cut(s) 334
ApeKI GCWGC 1 cut(s) 183
AspLEI GCGC 1 cut(s) 407
AspS9I GGNCC 1 cut(s) 316
AsuC2I CCSGG 1 cut(s) 252
AsuHPI GGTGA 1 cut(s) 97
AsuII TTCGAA 1 cut(s) 400
AvaII GGWCC 1 cut(s) 316
BaeGI GKGCMC 1 cut(s) 377
BalI TGGCCA 1 cut(s) 336
BbvI GCAGC 1 cut(s) 170
BccI CCATC 1 cut(s) 52
BciVI GTATCC 1 cut(s) 258
BcnI CCSGG 1 cut(s) 252
BcoDI GTCTC 1 cut(s) 99
BfoI RGCGCY 1 cut(s) 408
BfuI GTATCC 1 cut(s) 258
BglII AGATCT 2 cut(s) 309, 450
BisI GCNGC 1 cut(s) 184
BlsI GCNGC 1 cut(s) 185
Bme1390I CCNGG 1 cut(s) 252
Bme18I GGWCC 1 cut(s) 316
BmgT120I GGNCC 1 cut(s) 316
BmrFI CCNGG 1 cut(s) 252
BpmI CTGGAG 1 cut(s) 101
Bpu14I TTCGAA 1 cut(s) 400
BpuMI CCSGG 1 cut(s) 252
BsaBI GATNNNNATC 1 cut(s) 264
BsaI GGTCTC 1 cut(s) 99
Bse1I ACTGG 2 cut(s) 84, 212
Bse8I GATNNNNATC 1 cut(s) 264
BseGI GGATG 1 cut(s) 265
BseJI GATNNNNATC 1 cut(s) 264
BseNI ACTGG 2 cut(s) 84, 212
BseSI GKGCMC 1 cut(s) 377
BseXI GCAGC 1 cut(s) 170
BshFI GGCC 1 cut(s) 336
BsiSI CCGG 2 cut(s) 251, 444
BsmAI GTCTC 1 cut(s) 99
BsmI GAATGC 1 cut(s) 394
BsnI GGCC 1 cut(s) 336
Bso31I GGTCTC 1 cut(s) 99
Bsp119I TTCGAA 1 cut(s) 400
Bsp1286I GDGCHC 1 cut(s) 377
Bsp143I GATC 3 cut(s) 153, 309, 450
BspACI CCGC 1 cut(s) 242
BspANI GGCC 1 cut(s) 336
BspHI TCATGA 1 cut(s) 294
BspT104I TTCGAA 1 cut(s) 400
BspTNI GGTCTC 1 cut(s) 99
BsrI ACTGG 2 cut(s) 84, 212
BssMI GATC 3 cut(s) 153, 309, 450
BstBI TTCGAA 1 cut(s) 400
BstF5I GGATG 1 cut(s) 265
BstH2I RGCGCY 1 cut(s) 408
BstHHI GCGC 1 cut(s) 407
BstKTI GATC 3 cut(s) 156, 312, 453
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 3 cut(s) 153, 309, 450
BstNSI RCATGY 1 cut(s) 280
BstSCI CCNGG 1 cut(s) 250
BstSLI GKGCMC 1 cut(s) 377
BstV1I GCAGC 1 cut(s) 170
BstX2I RGATCY 2 cut(s) 309, 450
BstYI RGATCY 2 cut(s) 309, 450
BsuI GTATCC 1 cut(s) 258
BsuRI GGCC 1 cut(s) 336
BtsCI GGATG 1 cut(s) 265
BtsIMutI CAGTG 1 cut(s) 219
CciI TCATGA 1 cut(s) 294
CfoI GCGC 1 cut(s) 407
Cfr13I GGNCC 1 cut(s) 316
Csp6I GTAC 2 cut(s) 77, 274
CviAII CATG 3 cut(s) 118, 277, 295
CviJI RGCY 5 cut(s) 71, 91, 183, 336, 368
CviKI_1 RGCY 5 cut(s) 71, 91, 183, 336, 368
CviQI GTAC 2 cut(s) 77, 274
DpnI GATC 3 cut(s) 155, 311, 452
DpnII GATC 3 cut(s) 153, 309, 450
DraI TTTAAA 1 cut(s) 21
EaeI YGGCCR 1 cut(s) 334
EciI GGCGGA 1 cut(s) 257
Eco31I GGTCTC 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 316
FaeI CATG 3 cut(s) 121, 280, 298
FatI CATG 3 cut(s) 117, 276, 294
Fnu4HI GCNGC 1 cut(s) 184
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 1 cut(s) 184
GlaI GCGC 1 cut(s) 406
GluI GCNGC 1 cut(s) 184
GsuI CTGGAG 1 cut(s) 101
HaeII RGCGCY 1 cut(s) 408
HaeIII GGCC 1 cut(s) 336
HapII CCGG 2 cut(s) 251, 444
HhaI GCGC 1 cut(s) 407
Hin1II CATG 3 cut(s) 121, 280, 298
Hin6I GCGC 1 cut(s) 405
HinP1I GCGC 1 cut(s) 405
HinfI GANTC 1 cut(s) 234
HpaII CCGG 2 cut(s) 251, 444
HphI GGTGA 1 cut(s) 97
Hpy166II GTNNAC 1 cut(s) 77
Hpy188III TCNNGA 2 cut(s) 295, 428
Hpy8I GTNNAC 1 cut(s) 77
Hpy99I CGWCG 1 cut(s) 326
HpyAV CCTTC 1 cut(s) 349
HpyCH4IV ACGT 2 cut(s) 147, 324
HpySE526I ACGT 2 cut(s) 147, 324
Hsp92II CATG 3 cut(s) 121, 280, 298
HspAI GCGC 1 cut(s) 405
Kzo9I GATC 3 cut(s) 153, 309, 450
LpnPI CCDG 5 cut(s) 57, 65, 225, 264, 457
Lsp1109I GCAGC 1 cut(s) 170
MaeII ACGT 2 cut(s) 147, 324
MalI GATC 3 cut(s) 155, 311, 452
MboI GATC 3 cut(s) 153, 309, 450
MboII GAAGA 2 cut(s) 145, 416
MflI RGATCY 2 cut(s) 309, 450
MhlI GDGCHC 1 cut(s) 377
MlsI TGGCCA 1 cut(s) 336
MluCI AATT 1 cut(s) 345
MluNI TGGCCA 1 cut(s) 336
MnlI CCTC 4 cut(s) 76, 119, 232, 377
Mox20I TGGCCA 1 cut(s) 336
MscI TGGCCA 1 cut(s) 336
MseI TTAA 1 cut(s) 20
Msp20I TGGCCA 1 cut(s) 336
MspI CCGG 2 cut(s) 251, 444
MspR9I CCNGG 1 cut(s) 252
Mva1269I GAATGC 1 cut(s) 394
NciI CCSGG 1 cut(s) 252
NdeII GATC 3 cut(s) 153, 309, 450
NlaIII CATG 3 cut(s) 121, 280, 298
NspI RCATGY 1 cut(s) 280
NspV TTCGAA 1 cut(s) 400
PagI TCATGA 1 cut(s) 294
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PctI GAATGC 1 cut(s) 394
PfeI GAWTC 1 cut(s) 234
PkrI GCNGC 1 cut(s) 185
PspPI GGNCC 1 cut(s) 316
PsuI RGATCY 2 cut(s) 309, 450
RsaI GTAC 2 cut(s) 78, 275
RsaNI GTAC 2 cut(s) 77, 274
SaqAI TTAA 1 cut(s) 20
SatI GCNGC 1 cut(s) 184
Sau3AI GATC 3 cut(s) 153, 309, 450
Sau96I GGNCC 1 cut(s) 316
ScrFI CCNGG 1 cut(s) 252
SduI GDGCHC 1 cut(s) 377
SetI ASST 9 cut(s) 17, 73, 87, 93, 111, 150, 185, 327, 370
SfuI TTCGAA 1 cut(s) 400
SinI GGWCC 1 cut(s) 316
Sse9I AATT 1 cut(s) 345
SsiI CCGC 1 cut(s) 242
StyD4I CCNGG 1 cut(s) 250
TaiI ACGT 2 cut(s) 150, 327
TaqI TCGA 3 cut(s) 156, 237, 400
TasI AATT 1 cut(s) 345
TatI WGTACW 2 cut(s) 76, 273
TfiI GAWTC 1 cut(s) 234
Tru1I TTAA 1 cut(s) 20
Tru9I TTAA 1 cut(s) 20
TscAI CASTG 1 cut(s) 219
TseI GCWGC 1 cut(s) 183
TspDTI ATGAA 5 cut(s) 152, 237, 272, 276, 311
TspGWI ACGGA 1 cut(s) 392
TspRI CASTG 1 cut(s) 219
VpaK11BI GGWCC 1 cut(s) 316
XceI RCATGY 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.