Rroxscaffold_6G00407560

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000241
Physical Location & Seq
Reverse (-)
30184256 .. 30190369
6114 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00407560.1

Sequence Viewer

Length: 2841 bp
ATGGAACACAAGGGTAAGTTATTGGCTAGTGGAAATGGTGAGACTGACAGGCTTAGCAATCTTCCCAAGGAAGTCCTTGATAAGATTCTTTCACGTCTTCTGATTAACGACCTGGCTCGCTTCTGCTGCGTGTCCAAAACATGCAAAGATATGTCTCTGTCCGCTCCGTCTGTCAGCATTTGTGGATTTGGTGTAGATGAAATAGCGGAGATGCCGTGTGAAGTTCGGTTGAAACTGGTGAATGCATTGGATAGGTTCTTGCTTAGTCGTGGGGGTAATGAGATGCGGAAATTTACTCTTGTTTGGGAGGGTCATCATGAGGACGAGGTCGAGGAATGGCCATGCTTCTGTGTTAATGAAAGTTTCCGAATGATCACCTGGATTCAGAATGCACTGAGGTGTAATGTTCAAAAGCTTTATATTGATATGACCTTTTATGATCGTGATGGGGAACTTTTAGCATTTCCGTCTTGTGTCTTTAATTGTGCATCTTTGAGGTCTCTAGTGGTGGAAATGTCATTTACGGTTGTTAAAACACCATCCTTTAAGTTCTCCTGTAATCTTGAGACCTTGTCATTGAGCGATGTTGATATTGCAGACGAGGGGTTTTTCAAGTGGATATCACGTTCGTGCAAGCTTCTTAAGGAATTGCGTCTTGCAGGACTTAATGGGATAGATAATATCACCATTGAAAGCTTGTCTTTGGAAAAATTTAGTTATATTCATTTCGAGGTTTATGAAACCTGTCATATTAGCATTTCTGGTGAGAAGCTTGAAGAAATACATATTAACTGCAGTTATTCACCTAGAAGCACCGTGTTGAACATTATTGCTCCAAATGTCAAATCTTTGAGGTTGGAGGGAAATGTGAAAAATAACCTGAATCTGGGAGACTTAAATTGTTTAGAACAAGCTTCTATTCTTATGGAGCCTATAGTAGATGAGTTCGACAAAGTATATGATGTTCTTTCCAGTTTGTGCAGTGTGGAAGTTCTTGTCCTAAATGAAGCTACCATCAAGGCTGCTTACAGGGAGGAACGCATGCAAGCTCAATTAGATGAGATTTGGTATTTGCAAATGAATATTGGTAGCTTTACTGATGATCTAGTCCCAGCAGTTGTCTCTCTCTTAAGAGGAACACCAAATTTGTGTACCTTATACATGTGTTATAAACCAACTTCACTTGACCCTAAATCTAATACGTCTGGGTTTGATATGGAGTATTGGAAGAAGCAAAACCTGGATTTTATTTCTCAGGTTCAGGACGTTACCATAGAGCTCAGTGCTGGGTTTAATGGAATTGAGTTAGCAAGGTATGTACTTGAGCATGCGAAGAGCCTGGAGAAAATGGTCATTAGGTTCATGGCGCCGAAGCCTAAGAAAAGGGCTATTGCAAGTTGTGAGGGTGAAGGAGGAGGTTGTAGTGAGAGTAAGAGCATGATAGACAGGCTTAGTGATCTTCCAGATCAGGTTGTACATCACATTCTTTCGTTTCTAACTGTGATGGACCTCGTTCGAGTGTGTTGTGTCTCCAAACGATGGAGAGAGCTTTCTCTGTCTGCCCCTTGTTTGAATTTTGATGATATTCCGTCGGGTTGTAGATCCACATGCCGTAGCCGGCTGCAGTTGATGACGTATTTGGAGAGGTACTTGTTTCATCGTGGGGGTAATAAGATACAGTCGTTTCGTGTCAATTGGGAGCGGCACTATATGGATGAAAATGAAACTGTGTGCATCTGTGCTAGTGAGTATTATCGACTCATCACATGGATCAATAGTGCGGTGAGGTGTAATGTTGAAGTGCTTGACCTTAAGATGACTCTGTATGATCCCGAGGAGGCACCGTTTCCGTCTAGCGTCTTTCTTTGTGGAACTTTGAGGTCCCTAGTGGTGGACATGAATTTTACTCTTCTTAGAACGCCCTCGTTTGGTTTTTCCTCAAATCTCACTAAGTTGGAGTTAAAAGATGTTGTAATAGAGGATGACCTGTTTTTCAAATGGATCTCATGTTCCTGCAAGTTCATTCAGGAGTTGCATCTTGATCAAGTTCGTGGAATTAAAACTATCAGCGTTGAAAGCTCGTCTCTGAAAATATTGAGGTTTTTTGATGTGTTCAACACCTCCCATCTTAGCATATCAGGTGAGAAACTTGAAGACATAGTTGTGGGCTGGTACGTTGAATCACCTAGCAACAGTTCCTTAAATATCTGTGCTCCAAATCTTAAGTGTTTGAGTTGGAGTGGGAAATTGATGAATCACCTAACTCTGGGAAAGTTCAGACGTTTAGAAGCTGCTGTGCTTCGTCTAAGGCCTGATGAAAATGAATTAGACAAAGTGTATGAGGTTCTTTGCAGTTTATGCAAGGTTAGAGCTCTTATGCTAGACGAAGCAACCATTAAGGTTCCATTCAGTAAAGGATCCATGCGAGCTCCAATATATAATATTCATTGTTTGACTATGGATATTGGAAGCATTACTGACGAGTTGGTTCCAGCAATAGTTTCACTTTTCAGAGGATTGCCTAATATGTATATTCTTTGTATACAGTCTAAAACCCCTCTAGACAACCCTCAATCTAATACATCTGGGTTTGATATGGGATATTGGAAGTTGCAAAACCTTGCTTTTATTGATCAGCTGAAGGTGGTCAGCATAGAACTTTGCAATGACTCCAATGCAATTGATTTAGCAAGGTATATTCTTGAGTGCGCTCAGAATTTGCTGCAAATGATTGTTATTTATCCACCCCAGGATTCGGAGATAATTACAAGGAAGTTAAAGGAAAGCAAGATAGCTTCTGGTGCCACAGTTGTCTTTCGTGAAAGAGAGAAAAGAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

946

Amino Acids

107.47

Weight (kDa)

5.53

Isoelectric Point (pI)

42.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 18 - 53 2.6e-06 F-box domain
LRR_At5g56370 PF24758 126 - 284 3.8e-09 FBD-associated F-box protein At5g56370, LRR repeats
F-box PF00646 484 - 520 2.4e-09 F-box domain
F-box-like PF12937 484 - 519 1.3e-09 F-box-like
LRR_At5g56370 PF24758 589 - 758 7.7e-11 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1170
AccB1I GGYRCC 3 cut(s) 1366, 1840, 2801
AccB7I CCANNNNNTGG 1 cut(s) 1539
AccBSI CCGCTC 2 cut(s) 164, 1702
AccI GTMKAC 1 cut(s) 2542
AciI CCGC 5 cut(s) 162, 206, 286, 1702, 1781
AclWI GGATC 6 cut(s) 1596, 1778, 1823, 2009, 2412, 2425
AcoI YGGCCR 1 cut(s) 338
AcsI RAATTY 6 cut(s) 290, 710, 1144, 1573, 1900, 2716
AcuI CTGAAG 1 cut(s) 2660
AcyI GRCGYC 1 cut(s) 1367
AfaI GTAC 5 cut(s) 1153, 1320, 1476, 1649, 2174
AfiI CCNNNNNNNGG 6 cut(s) 886, 1539, 1891, 1928, 2266, 2755
AflII CTTAAG 4 cut(s) 641, 1129, 1811, 2222
AflIII ACRYGT 1 cut(s) 1161
AjiI CACGTC 1 cut(s) 95
AjnI CCWGG 5 cut(s) 111, 377, 1239, 1338, 2748
AleI CACNNNNGTG 2 cut(s) 397, 628
AloI GAACNNNNNNTCC 4 cut(s) 610, 642, 1993, 2025
Alw21I GWGCWC 4 cut(s) 1281, 2215, 2374, 2431
Alw26I GTCTC 8 cut(s) 35, 159, 504, 560, 885, 1126, 1534, 2088
AlwI GGATC 6 cut(s) 1596, 1778, 1823, 2009, 2412, 2425
Ama87I CYCGRG 1 cut(s) 1832
AoxI GGCC 2 cut(s) 338, 2309
ApeKI GCWGC 5 cut(s) 126, 1022, 1621, 2291, 2722
ApoI RAATTY 6 cut(s) 290, 710, 1144, 1573, 1900, 2716
AspLEI GCGC 2 cut(s) 1369, 2711
AspS9I GGNCC 2 cut(s) 1507, 1881
AvaI CYCGRG 1 cut(s) 1832
AvaII GGWCC 2 cut(s) 1507, 1881
BaeI ACNNNNGTAYC 2 cut(s) 1667, 1700
BalI TGGCCA 1 cut(s) 340
BamHI GGATCC 1 cut(s) 2417
BanI GGYRCC 3 cut(s) 1366, 1840, 2801
BanII GRGCYC 3 cut(s) 1281, 2374, 2431
BbsI GAAGAC 2 cut(s) 89, 2160
Bbv12I GWGCWC 4 cut(s) 1281, 2215, 2374, 2431
BbvI GCAGC 5 cut(s) 113, 1009, 1608, 2278, 2709
BccI CCATC 6 cut(s) 440, 547, 1022, 1498, 1533, 2133
BceAI ACGGC 2 cut(s) 199, 1596
BciT130I CCWGG 5 cut(s) 113, 379, 1241, 1340, 2750
BclI TGATCA 3 cut(s) 372, 2041, 2632
BcoDI GTCTC 8 cut(s) 35, 159, 504, 560, 885, 1126, 1534, 2088
BfmI CTRYAG 3 cut(s) 793, 933, 1622
BfoI RGCGCY 1 cut(s) 1370
BfrI CTTAAG 4 cut(s) 641, 1129, 1811, 2222
BisI GCNGC 6 cut(s) 127, 1023, 1622, 1703, 2292, 2723
BlpI GCTNAGC 1 cut(s) 53
BlsI GCNGC 6 cut(s) 128, 1024, 1623, 1704, 2293, 2724
Bme1390I CCNGG 5 cut(s) 113, 379, 1241, 1340, 2750
Bme18I GGWCC 2 cut(s) 1507, 1881
BmeT110I CYCGRG 1 cut(s) 1832
BmgBI CACGTC 1 cut(s) 95
BmgT120I GGNCC 2 cut(s) 1507, 1881
BmiI GGNNCC 8 cut(s) 930, 1368, 1842, 1883, 2403, 2419, 2490, 2803
BmrFI CCNGG 5 cut(s) 113, 379, 1241, 1340, 2750
BmsI GCATC 5 cut(s) 201, 273, 497, 1743, 2044
BpiI GAAGAC 2 cut(s) 89, 2160
BpmI CTGGAG 1 cut(s) 1361
Bpu1102I GCTNAGC 1 cut(s) 53
BpuEI CTTGAG 3 cut(s) 584, 1343, 2723
BsaHI GRCGYC 1 cut(s) 1367
BsaI GGTCTC 2 cut(s) 504, 560
BsaJI CCNNGG 3 cut(s) 66, 1833, 2748
BsaXI ACNNNNNCTCC 4 cut(s) 200, 230, 1829, 1859
Bsc4I CCNNNNNNNGG 6 cut(s) 886, 1539, 1891, 1928, 2266, 2755
Bse118I RCCGGY 1 cut(s) 1617
Bse1I ACTGG 2 cut(s) 240, 972
Bse3DI GCAATG 1 cut(s) 2671
BseBI CCWGG 5 cut(s) 113, 379, 1241, 1340, 2750
BseDI CCNNGG 3 cut(s) 66, 1833, 2748
BseGI GGATG 3 cut(s) 539, 1720, 1987
BseLI CCNNNNNNNGG 6 cut(s) 886, 1539, 1891, 1928, 2266, 2755
BseMI GCAATG 1 cut(s) 2671
BseMII CTCAG 4 cut(s) 386, 1268, 1294, 2726
BseNI ACTGG 2 cut(s) 240, 972
BseRI GAGGAG 2 cut(s) 1428, 1850
BseXI GCAGC 5 cut(s) 113, 1009, 1608, 2278, 2709
BseYI CCCAGC 2 cut(s) 1111, 1286
BsgI GTGCAG 1 cut(s) 1000
BshFI GGCC 2 cut(s) 340, 2311
BshNI GGYRCC 3 cut(s) 1366, 1840, 2801
BsiHKAI GWGCWC 4 cut(s) 1281, 2215, 2374, 2431
BsiHKCI CYCGRG 1 cut(s) 1832
BsiSI CCGG 1 cut(s) 1618
BslFI GGGAC 2 cut(s) 1094, 1867
BslI CCNNNNNNNGG 6 cut(s) 886, 1539, 1891, 1928, 2266, 2755
BsmAI GTCTC 8 cut(s) 35, 159, 504, 560, 885, 1126, 1534, 2088
BsmBI CGTCTC 1 cut(s) 2088
BsmFI GGGAC 2 cut(s) 1094, 1867
BsmI GAATGC 2 cut(s) 247, 394
BsnI GGCC 2 cut(s) 340, 2311
Bso31I GGTCTC 2 cut(s) 504, 560
BsoBI CYCGRG 1 cut(s) 1832
Bsp1286I GDGCHC 4 cut(s) 1281, 2215, 2374, 2431
Bsp1407I TGTACA 1 cut(s) 1474
Bsp1720I GCTNAGC 1 cut(s) 53
BspACI CCGC 5 cut(s) 162, 206, 286, 1702, 1781
BspANI GGCC 2 cut(s) 340, 2311
BspCNI CTCAG 4 cut(s) 387, 1267, 1293, 2725
BspHI TCATGA 1 cut(s) 316
BspLI GGNNCC 8 cut(s) 930, 1368, 1842, 1883, 2403, 2419, 2490, 2803
BspMAI CTGCAG 2 cut(s) 797, 1626
BspPI GGATC 6 cut(s) 1596, 1778, 1823, 2009, 2412, 2425
BspQI GCTCTTC 1 cut(s) 1328
BspT107I GGYRCC 3 cut(s) 1366, 1840, 2801
BspTI CTTAAG 4 cut(s) 641, 1129, 1811, 2222
BspTNI GGTCTC 2 cut(s) 504, 560
BsrBI CCGCTC 2 cut(s) 164, 1702
BsrDI GCAATG 1 cut(s) 2671
BsrFI RCCGGY 1 cut(s) 1617
BsrGI TGTACA 1 cut(s) 1474
BsrI ACTGG 2 cut(s) 240, 972
BssAI RCCGGY 1 cut(s) 1617
BssECI CCNNGG 3 cut(s) 66, 1833, 2748
BssNAI GTATAC 1 cut(s) 2543
BssNI GRCGYC 1 cut(s) 1367
BssT1I CCWWGG 1 cut(s) 66
Bst1107I GTATAC 1 cut(s) 2543
Bst2UI CCWGG 5 cut(s) 113, 379, 1241, 1340, 2750
Bst4CI ACNGT 9 cut(s) 526, 817, 1501, 1680, 1729, 1845, 2195, 2547, 2809
Bst6I CTCTTC 2 cut(s) 1328, 1914
BstACI GRCGYC 1 cut(s) 1367
BstAFI CTTAAG 4 cut(s) 641, 1129, 1811, 2222
BstAPI GCANNNNNTGC 1 cut(s) 2358
BstAUI TGTACA 1 cut(s) 1474
BstC8I GCNNGC 7 cut(s) 118, 635, 1043, 1047, 1329, 1619, 2427
BstF5I GGATG 3 cut(s) 539, 1720, 1987
BstH2I RGCGCY 1 cut(s) 1370
BstHHI GCGC 2 cut(s) 1369, 2711
BstMAI GTCTC 8 cut(s) 35, 159, 504, 560, 885, 1126, 1534, 2088
BstMWI GCNNNNNNNGC 4 cut(s) 126, 2076, 2358, 2801
BstNI CCWGG 5 cut(s) 113, 379, 1241, 1340, 2750
BstNSI RCATGY 5 cut(s) 144, 1045, 1165, 1331, 1611
BstSCI CCNGG 5 cut(s) 111, 377, 1239, 1338, 2748
BstSFI CTRYAG 3 cut(s) 793, 933, 1622
BstV1I GCAGC 5 cut(s) 113, 1009, 1608, 2278, 2709
BstV2I GAAGAC 2 cut(s) 89, 2160
BstX2I RGATCY 3 cut(s) 1601, 2001, 2417
BstYI RGATCY 3 cut(s) 1601, 2001, 2417
BstZ17I GTATAC 1 cut(s) 2543
BsuRI GGCC 2 cut(s) 340, 2311
BtgZI GCGATG 1 cut(s) 597
BtrI CACGTC 1 cut(s) 95
BtsCI GGATG 3 cut(s) 539, 1720, 1987
BtsI GCAGTG 1 cut(s) 988
BtsIMutI CAGTG 3 cut(s) 392, 988, 1288
Cac8I GCNNGC 7 cut(s) 118, 635, 1043, 1047, 1329, 1619, 2427
CciI TCATGA 1 cut(s) 316
CfoI GCGC 2 cut(s) 1369, 2711
Cfr10I RCCGGY 1 cut(s) 1617
Cfr13I GGNCC 2 cut(s) 1507, 1881
CseI GACGC 2 cut(s) 641, 1846
Csp6I GTAC 5 cut(s) 1152, 1319, 1475, 1648, 2173
CviQI GTAC 5 cut(s) 1152, 1319, 1475, 1648, 2173
DinI GGCGCC 1 cut(s) 1368
EaeI YGGCCR 1 cut(s) 338
Eam1104I CTCTTC 2 cut(s) 1328, 1914
EarI CTCTTC 2 cut(s) 1328, 1914
Ecl136II GAGCTC 3 cut(s) 1279, 2372, 2429
Eco130I CCWWGG 1 cut(s) 66
Eco147I AGGCCT 1 cut(s) 2311
Eco24I GRGCYC 3 cut(s) 1281, 2374, 2431
Eco31I GGTCTC 2 cut(s) 504, 560
Eco32I GATATC 1 cut(s) 621
Eco47I GGWCC 2 cut(s) 1507, 1881
Eco53kI GAGCTC 3 cut(s) 1279, 2372, 2429
Eco57I CTGAAG 1 cut(s) 2660
Eco88I CYCGRG 1 cut(s) 1832
EcoICRI GAGCTC 3 cut(s) 1279, 2372, 2429
EcoO109I RGGNCCY 1 cut(s) 1881
EcoRII CCWGG 5 cut(s) 111, 377, 1239, 1338, 2748
EcoRV GATATC 1 cut(s) 621
EcoT14I CCWWGG 1 cut(s) 66
EcoT22I ATGCAT 1 cut(s) 247
EcoT38I GRGCYC 3 cut(s) 1281, 2374, 2431
EgeI GGCGCC 1 cut(s) 1368
EheI GGCGCC 1 cut(s) 1368
ErhI CCWWGG 1 cut(s) 66
Esp3I CGTCTC 1 cut(s) 2088
FalI AAGNNNNNCTT 2 cut(s) 685, 717
FaqI GGGAC 2 cut(s) 1094, 1867
FbaI TGATCA 3 cut(s) 372, 2041, 2632
FblI GTMKAC 1 cut(s) 2542
Fnu4HI GCNGC 6 cut(s) 127, 1023, 1622, 1703, 2292, 2723
FokI GGATG 3 cut(s) 526, 1727, 1994
FriOI GRGCYC 3 cut(s) 1281, 2374, 2431
Fsp4HI GCNGC 6 cut(s) 127, 1023, 1622, 1703, 2292, 2723
GlaI GCGC 2 cut(s) 1368, 2710
GluI GCNGC 6 cut(s) 127, 1023, 1622, 1703, 2292, 2723
GsaI CCCAGC 2 cut(s) 1115, 1290
GsuI CTGGAG 1 cut(s) 1361
HaeII RGCGCY 1 cut(s) 1370
HaeIII GGCC 2 cut(s) 340, 2311
HapII CCGG 1 cut(s) 1618
HgaI GACGC 2 cut(s) 641, 1846
HhaI GCGC 2 cut(s) 1369, 2711
Hin1I GRCGYC 1 cut(s) 1367
Hin6I GCGC 2 cut(s) 1367, 2709
HinP1I GCGC 2 cut(s) 1367, 2709
HindIII AAGCTT 5 cut(s) 413, 635, 694, 770, 912
HinfI GANTC 9 cut(s) 85, 382, 883, 1758, 1819, 2180, 2254, 2669, 2753
HpaII CCGG 1 cut(s) 1618
Hpy166II GTNNAC 3 cut(s) 1152, 1894, 2543
Hpy188I TCNGA 8 cut(s) 102, 368, 387, 2088, 2279, 2513, 2715, 2758
Hpy8I GTNNAC 3 cut(s) 1152, 1894, 2543
Hpy99I CGWCG 1 cut(s) 1594
HpyAV CCTTC 2 cut(s) 1403, 2635
HpyCH4III ACNGT 9 cut(s) 526, 817, 1501, 1680, 1729, 1845, 2195, 2547, 2809
HpyCH4IV ACGT 7 cut(s) 94, 625, 1202, 1266, 1634, 2175, 2281
HpyF10VI GCNNNNNNNGC 4 cut(s) 126, 2076, 2358, 2801
HpySE526I ACGT 7 cut(s) 94, 625, 1202, 1266, 1634, 2175, 2281
Hsp92I GRCGYC 1 cut(s) 1367
HspAI GCGC 2 cut(s) 1367, 2709
KasI GGCGCC 1 cut(s) 1366
KroI GCCGGC 1 cut(s) 1617
KroNI GCCGGC 1 cut(s) 1619
Ksp22I TGATCA 3 cut(s) 372, 2041, 2632
LguI GCTCTTC 1 cut(s) 1328
LmnI GCTCC 6 cut(s) 169, 838, 928, 1699, 2218, 2434
Lsp1109I GCAGC 5 cut(s) 113, 1009, 1608, 2278, 2709
LweI GCATC 5 cut(s) 201, 273, 497, 1743, 2044
MaeII ACGT 7 cut(s) 94, 625, 1202, 1266, 1634, 2175, 2281
MaeIII GTNAC 1 cut(s) 1267
MbiI CCGCTC 2 cut(s) 164, 1702
MboII GAAGA 8 cut(s) 53, 89, 788, 1240, 1345, 1451, 1901, 2165
MfeI CAATTG 2 cut(s) 1693, 2679
MflI RGATCY 3 cut(s) 1601, 2001, 2417
MhlI GDGCHC 4 cut(s) 1281, 2215, 2374, 2431
MlsI TGGCCA 1 cut(s) 340
MluNI TGGCCA 1 cut(s) 340
Mly113I GGCGCC 1 cut(s) 1367
MlyI GAGTC 3 cut(s) 1752, 1813, 2663
MmeI TCCRAC 3 cut(s) 837, 1935, 2216
Mox20I TGGCCA 1 cut(s) 340
Mph1103I ATGCAT 1 cut(s) 247
MroNI GCCGGC 1 cut(s) 1617
MscI TGGCCA 1 cut(s) 340
MslI CAYNNNNRTG 3 cut(s) 397, 628, 2162
Msp20I TGGCCA 1 cut(s) 340
MspA1I CMGCKG 1 cut(s) 2638
MspCI CTTAAG 4 cut(s) 641, 1129, 1811, 2222
MspI CCGG 1 cut(s) 1618
MspR9I CCNGG 5 cut(s) 113, 379, 1241, 1340, 2750
MunI CAATTG 2 cut(s) 1693, 2679
Mva1269I GAATGC 2 cut(s) 247, 394
MvaI CCWGG 5 cut(s) 113, 379, 1241, 1340, 2750
MwoI GCNNNNNNNGC 4 cut(s) 126, 2076, 2358, 2801
NaeI GCCGGC 1 cut(s) 1619
NarI GGCGCC 1 cut(s) 1367
NgoMIV GCCGGC 1 cut(s) 1617
NlaIV GGNNCC 8 cut(s) 930, 1368, 1842, 1883, 2403, 2419, 2490, 2803
NsiI ATGCAT 1 cut(s) 247
NspI RCATGY 5 cut(s) 144, 1045, 1165, 1331, 1611
OliI CACNNNNGTG 2 cut(s) 397, 628
PaeI GCATGC 2 cut(s) 1045, 1331
PagI TCATGA 1 cut(s) 316
PceI AGGCCT 1 cut(s) 2311
PciI ACATGT 1 cut(s) 1161
PciSI GCTCTTC 1 cut(s) 1328
PctI GAATGC 2 cut(s) 247, 394
PdiI GCCGGC 1 cut(s) 1619
PfeI GAWTC 6 cut(s) 85, 382, 883, 2180, 2254, 2753
PflFI GACNNNGTC 2 cut(s) 326, 571
PflMI CCANNNNNTGG 1 cut(s) 1539
PkrI GCNGC 6 cut(s) 128, 1024, 1623, 1704, 2293, 2724
PleI GAGTC 3 cut(s) 1752, 1813, 2663
PluTI GGCGCC 1 cut(s) 1370
PpsI GAGTC 3 cut(s) 1752, 1813, 2663
PpuMI RGGWCCY 1 cut(s) 1881
PscI ACATGT 1 cut(s) 1161
PsiI TTATAA 1 cut(s) 1170
Psp124BI GAGCTC 3 cut(s) 1281, 2374, 2431
Psp5II RGGWCCY 1 cut(s) 1881
Psp6I CCWGG 5 cut(s) 111, 377, 1239, 1338, 2748
PspFI CCCAGC 2 cut(s) 1111, 1286
PspGI CCWGG 5 cut(s) 111, 377, 1239, 1338, 2748
PspN4I GGNNCC 8 cut(s) 930, 1368, 1842, 1883, 2403, 2419, 2490, 2803
PspPI GGNCC 2 cut(s) 1507, 1881
PspPPI RGGWCCY 1 cut(s) 1881
PsrI GAACNNNNNNTAC 2 cut(s) 948, 980
PstI CTGCAG 2 cut(s) 797, 1626
PsuI RGATCY 3 cut(s) 1601, 2001, 2417
PsyI GACNNNGTC 2 cut(s) 326, 571
PvuII CAGCTG 1 cut(s) 2638
RsaI GTAC 5 cut(s) 1153, 1320, 1476, 1649, 2174
RsaNI GTAC 5 cut(s) 1152, 1319, 1475, 1648, 2173
RseI CAYNNNNRTG 3 cut(s) 397, 628, 2162
SacI GAGCTC 3 cut(s) 1281, 2374, 2431
SapI GCTCTTC 1 cut(s) 1328
SatI GCNGC 6 cut(s) 127, 1023, 1622, 1703, 2292, 2723
Sau96I GGNCC 2 cut(s) 1507, 1881
SchI GAGTC 3 cut(s) 1752, 1813, 2663
ScrFI CCNGG 5 cut(s) 113, 379, 1241, 1340, 2750
SduI GDGCHC 4 cut(s) 1281, 2215, 2374, 2431
SfaNI GCATC 5 cut(s) 201, 273, 497, 1743, 2044
SfcI CTRYAG 3 cut(s) 793, 933, 1622
SfoI GGCGCC 1 cut(s) 1368
SinI GGWCC 2 cut(s) 1507, 1881
SmiMI CAYNNNNRTG 3 cut(s) 397, 628, 2162
SmlI CTYRAG 7 cut(s) 563, 641, 1129, 1322, 1811, 2222, 2702
SmoI CTYRAG 7 cut(s) 563, 641, 1129, 1322, 1811, 2222, 2702
SphI GCATGC 2 cut(s) 1045, 1331
SseBI AGGCCT 1 cut(s) 2311
SsiI CCGC 5 cut(s) 162, 206, 286, 1702, 1781
SspDI GGCGCC 1 cut(s) 1366
SspI AATATT 3 cut(s) 1084, 2094, 2443
SstI GAGCTC 3 cut(s) 1281, 2374, 2431
StuI AGGCCT 1 cut(s) 2311
StyD4I CCNGG 5 cut(s) 111, 377, 1239, 1338, 2748
StyI CCWWGG 1 cut(s) 66
TaaI ACNGT 9 cut(s) 526, 817, 1501, 1680, 1729, 1845, 2195, 2547, 2809
TaiI ACGT 7 cut(s) 97, 628, 1205, 1269, 1637, 2178, 2284
TaqI TCGA 5 cut(s) 330, 729, 948, 1516, 1756
TatI WGTACW 2 cut(s) 1318, 1474
TauI GCSGC 1 cut(s) 1705
TfiI GAWTC 6 cut(s) 85, 382, 883, 2180, 2254, 2753
TscAI CASTG 3 cut(s) 399, 988, 1288
TseI GCWGC 5 cut(s) 126, 1022, 1621, 2291, 2722
TspGWI ACGGA 4 cut(s) 156, 456, 1578, 1839
TspRI CASTG 3 cut(s) 399, 988, 1288
Tth111I GACNNNGTC 2 cut(s) 326, 571
Van91I CCANNNNNTGG 1 cut(s) 1539
Vha464I CTTAAG 4 cut(s) 641, 1129, 1811, 2222
VpaK11BI GGWCC 2 cut(s) 1507, 1881
XapI RAATTY 6 cut(s) 290, 710, 1144, 1573, 1900, 2716
XbaI TCTAGA 1 cut(s) 2560
XceI RCATGY 5 cut(s) 144, 1045, 1165, 1331, 1611
XmiI GTMKAC 1 cut(s) 2542
Zsp2I ATGCAT 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.