RchiOBHm_Chr3g0474021

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000241
Physical Location & Seq
Forward (+)
19741244 .. 19741816
573 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43967

Sequence Viewer

Length: 429 bp
ATGCAAGCTCAATTAGATGAGATTTGGTATTTGCAAATGAATATTGGTAGCTTTACTGATGATCTAGTCCCGGCAGTTGTCTCTCTCTTAAGAGGAACACCAAATTTATGTACCTTATACATGTGTTATAAACCAACTTCACTTGACCCTAAATCTAATACGTCTGGGTTTGATATGGAGTATTGGAAGAAGCAAAACCTGGATTTTATTTCTCAGGTTCAGGACGTTACCATAGAGCTCAGTGCTGGGTTTAATGGAATTGAGTTAGCAAGGTATGTACTTGAGCATGCGGAGAGCCTGGAGAAAATGGTCATTAGGTATTTAACCCGTGAATCTAATGTTAGACGGAAGTTAAAAAATAGTAACATGATCTCCAATGCCGCAGTTACTTTTGAGAAATACGAAAGTTCAGTTAACCCATTTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

142

Amino Acids

16.39

Weight (kDa)

5.16

Isoelectric Point (pI)

40.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 129
AciI CCGC 2 cut(s) 290, 381
AcsI RAATTY 1 cut(s) 103
AfaI GTAC 2 cut(s) 112, 279
AflII CTTAAG 1 cut(s) 88
AflIII ACRYGT 1 cut(s) 120
AjnI CCWGG 2 cut(s) 198, 297
AluBI AGCT 3 cut(s) 8, 51, 238
AluI AGCT 3 cut(s) 8, 51, 238
Alw21I GWGCWC 1 cut(s) 240
Alw26I GTCTC 1 cut(s) 85
ApoI RAATTY 1 cut(s) 103
AsuC2I CCSGG 1 cut(s) 71
BanII GRGCYC 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 240
BciT130I CCWGG 2 cut(s) 200, 299
BcnI CCSGG 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 85
BfaI CTAG 1 cut(s) 65
BfrI CTTAAG 1 cut(s) 88
BisI GCNGC 1 cut(s) 381
BlsI GCNGC 1 cut(s) 382
Bme1390I CCNGG 3 cut(s) 71, 200, 299
BmrFI CCNGG 3 cut(s) 71, 200, 299
BpmI CTGGAG 1 cut(s) 320
BpuEI CTTGAG 1 cut(s) 302
BpuMI CCSGG 1 cut(s) 71
BsaXI ACNNNNNCTCC 2 cut(s) 356, 386
BseBI CCWGG 2 cut(s) 200, 299
BseMII CTCAG 2 cut(s) 227, 253
BseYI CCCAGC 1 cut(s) 245
BsiHKAI GWGCWC 1 cut(s) 240
BsiSI CCGG 1 cut(s) 71
BslFI GGGAC 1 cut(s) 53
BsmAI GTCTC 1 cut(s) 85
BsmFI GGGAC 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 240
Bsp143I GATC 2 cut(s) 61, 369
BspACI CCGC 2 cut(s) 290, 381
BspCNI CTCAG 2 cut(s) 226, 252
BspTI CTTAAG 1 cut(s) 88
BssMI GATC 2 cut(s) 61, 369
Bst2UI CCWGG 2 cut(s) 200, 299
BstAFI CTTAAG 1 cut(s) 88
BstC8I GCNNGC 2 cut(s) 6, 288
BstDEI CTNAG 2 cut(s) 213, 239
BstKTI GATC 2 cut(s) 64, 372
BstMAI GTCTC 1 cut(s) 85
BstMBI GATC 2 cut(s) 61, 369
BstNI CCWGG 2 cut(s) 200, 299
BstNSI RCATGY 2 cut(s) 124, 290
BstSCI CCNGG 3 cut(s) 69, 198, 297
BtsIMutI CAGTG 1 cut(s) 247
Cac8I GCNNGC 2 cut(s) 6, 288
Csp6I GTAC 2 cut(s) 111, 278
CviAII CATG 3 cut(s) 121, 287, 367
CviJI RGCY 4 cut(s) 8, 51, 238, 297
CviKI_1 RGCY 4 cut(s) 8, 51, 238, 297
CviQI GTAC 2 cut(s) 111, 278
DdeI CTNAG 2 cut(s) 213, 239
DpnI GATC 2 cut(s) 63, 371
DpnII GATC 2 cut(s) 61, 369
Ecl136II GAGCTC 1 cut(s) 238
Eco24I GRGCYC 1 cut(s) 240
Eco53kI GAGCTC 1 cut(s) 238
EcoICRI GAGCTC 1 cut(s) 238
EcoRII CCWGG 2 cut(s) 198, 297
EcoT38I GRGCYC 1 cut(s) 240
FaeI CATG 3 cut(s) 124, 290, 370
FaiI YATR 9 cut(s) 109, 118, 122, 129, 176, 233, 276, 288, 368
FaqI GGGAC 1 cut(s) 53
FatI CATG 3 cut(s) 120, 286, 366
Fnu4HI GCNGC 1 cut(s) 381
FriOI GRGCYC 1 cut(s) 240
Fsp4HI GCNGC 1 cut(s) 381
FspBI CTAG 1 cut(s) 65
GluI GCNGC 1 cut(s) 381
GsaI CCCAGC 1 cut(s) 249
GsuI CTGGAG 1 cut(s) 320
HapII CCGG 1 cut(s) 71
Hin1II CATG 3 cut(s) 124, 290, 370
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HinfI GANTC 1 cut(s) 332
HpaI GTTAAC 1 cut(s) 415
HpaII CCGG 1 cut(s) 71
Hpy166II GTNNAC 1 cut(s) 415
Hpy188III TCNNGA 1 cut(s) 221
Hpy8I GTNNAC 1 cut(s) 415
HpyCH4IV ACGT 2 cut(s) 161, 225
HpyCH4V TGCA 2 cut(s) 4, 34
HpyF3I CTNAG 2 cut(s) 213, 239
HpySE526I ACGT 2 cut(s) 161, 225
Hsp92II CATG 3 cut(s) 124, 290, 370
KspAI GTTAAC 1 cut(s) 415
Kzo9I GATC 2 cut(s) 61, 369
LpnPI CCDG 9 cut(s) 84, 150, 185, 200, 206, 212, 231, 284, 311
MaeI CTAG 1 cut(s) 65
MaeII ACGT 2 cut(s) 161, 225
MaeIII GTNAC 3 cut(s) 226, 362, 385
MalI GATC 2 cut(s) 63, 371
MboI GATC 2 cut(s) 61, 369
MboII GAAGA 1 cut(s) 199
MhlI GDGCHC 1 cut(s) 240
MluCI AATT 3 cut(s) 11, 103, 258
MnlI CCTC 1 cut(s) 86
MseI TTAA 5 cut(s) 89, 252, 323, 353, 414
MspCI CTTAAG 1 cut(s) 88
MspI CCGG 1 cut(s) 71
MspR9I CCNGG 3 cut(s) 71, 200, 299
MvaI CCWGG 2 cut(s) 200, 299
NciI CCSGG 1 cut(s) 71
NdeII GATC 2 cut(s) 61, 369
NlaIII CATG 3 cut(s) 124, 290, 370
NspI RCATGY 2 cut(s) 124, 290
PaeI GCATGC 1 cut(s) 290
PciI ACATGT 1 cut(s) 120
PfeI GAWTC 1 cut(s) 332
PkrI GCNGC 1 cut(s) 382
PscI ACATGT 1 cut(s) 120
PsiI TTATAA 1 cut(s) 129
Psp124BI GAGCTC 1 cut(s) 240
Psp6I CCWGG 2 cut(s) 198, 297
PspFI CCCAGC 1 cut(s) 245
PspGI CCWGG 2 cut(s) 198, 297
RsaI GTAC 2 cut(s) 112, 279
RsaNI GTAC 2 cut(s) 111, 278
SacI GAGCTC 1 cut(s) 240
SaqAI TTAA 5 cut(s) 89, 252, 323, 353, 414
SatI GCNGC 1 cut(s) 381
Sau3AI GATC 2 cut(s) 61, 369
ScrFI CCNGG 3 cut(s) 71, 200, 299
SduI GDGCHC 1 cut(s) 240
SmlI CTYRAG 2 cut(s) 88, 281
SmoI CTYRAG 2 cut(s) 88, 281
SphI GCATGC 1 cut(s) 290
Sse9I AATT 3 cut(s) 11, 103, 258
SsiI CCGC 2 cut(s) 290, 381
SspI AATATT 1 cut(s) 43
SspMI CTAG 1 cut(s) 65
SstI GAGCTC 1 cut(s) 240
StyD4I CCNGG 3 cut(s) 69, 198, 297
TaiI ACGT 2 cut(s) 164, 228
TasI AATT 3 cut(s) 11, 103, 258
TatI WGTACW 1 cut(s) 277
TauI GCSGC 1 cut(s) 383
TfiI GAWTC 1 cut(s) 332
Tru1I TTAA 5 cut(s) 89, 252, 323, 353, 414
Tru9I TTAA 5 cut(s) 89, 252, 323, 353, 414
TscAI CASTG 1 cut(s) 247
TspDTI ATGAA 1 cut(s) 53
TspGWI ACGGA 1 cut(s) 361
TspRI CASTG 1 cut(s) 247
Vha464I CTTAAG 1 cut(s) 88
XapI RAATTY 1 cut(s) 103
XceI RCATGY 2 cut(s) 124, 290
XspI CTAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.