Rh3CG214400

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000241
Physical Location & Seq
Forward (+)
19680738 .. 19683832
3095 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG214400.1

Sequence Viewer

Length: 462 bp
ATGGGATACTGGCAGATGCAAGACCTTGCTTTTTTCAATCAGCTTAAGGAGTTCACAATAGAGCTTTGGGGAGGATCTAATGGAATCAAATTAGCAAGGTATATTCTTGAGCATGCTCAGAATTTGGAGAAAATGGTCGTTGTTCACTTGCAAGAGCATTCTGATGTTGAAAGGTTTTTAAGTCAAAGCAAGACATGCGGGTTCTATATGGAATACTGGAAGCAGCAAAACTTCGGTTTTATACTTGAGCTTAATGAGGTTACCATTGAGCTTTCCAGAGGACTAAATGGAATTGAGATAGCAAGGTATATGCTCGAGCATGCTCAGAATTTGAAGAAAATGGTCATAGTTTGTTTACCGCAGCAGTCTGGTTTTGTTAAAAGGATGTTAGATAAAAGTAAGATGATTTCGAATGGCACAGTTGTGTTCAAGGAAAATCGACAAGAGAGAAAGCTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

153

Amino Acids

18.03

Weight (kDa)

8.52

Isoelectric Point (pI)

46.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 198, 359
AclWI GGATC 1 cut(s) 82
AcsI RAATTY 2 cut(s) 121, 328
AflII CTTAAG 1 cut(s) 44
AgsI TTSAA 4 cut(s) 37, 170, 334, 430
AleI CACNNNNGTG 1 cut(s) 422
AluBI AGCT 5 cut(s) 43, 64, 250, 271, 454
AluI AGCT 5 cut(s) 43, 64, 250, 271, 454
AlwI GGATC 1 cut(s) 82
Ama87I CYCGRG 1 cut(s) 314
ApeKI GCWGC 2 cut(s) 223, 361
ApoI RAATTY 2 cut(s) 121, 328
AsuII TTCGAA 1 cut(s) 410
AvaI CYCGRG 1 cut(s) 314
BbvI GCAGC 2 cut(s) 235, 373
BfrI CTTAAG 1 cut(s) 44
BisI GCNGC 2 cut(s) 224, 362
BlsI GCNGC 2 cut(s) 225, 363
BmeT110I CYCGRG 1 cut(s) 314
BmsI GCATC 1 cut(s) 6
Bpu14I TTCGAA 1 cut(s) 410
BpuEI CTTGAG 2 cut(s) 128, 266
Bse1I ACTGG 2 cut(s) 14, 221
BseGI GGATG 1 cut(s) 390
BseMII CTCAG 2 cut(s) 131, 338
BseNI ACTGG 2 cut(s) 14, 221
BseXI GCAGC 2 cut(s) 235, 373
BsiHKCI CYCGRG 1 cut(s) 314
BsmI GAATGC 1 cut(s) 157
BsoBI CYCGRG 1 cut(s) 314
Bsp119I TTCGAA 1 cut(s) 410
Bsp143I GATC 1 cut(s) 74
BspACI CCGC 2 cut(s) 198, 359
BspCNI CTCAG 2 cut(s) 130, 337
BspPI GGATC 1 cut(s) 82
BspT104I TTCGAA 1 cut(s) 410
BspTI CTTAAG 1 cut(s) 44
BsrI ACTGG 2 cut(s) 14, 221
BssMI GATC 1 cut(s) 74
Bst4CI ACNGT 1 cut(s) 421
BstAFI CTTAAG 1 cut(s) 44
BstAPI GCANNNNNTGC 1 cut(s) 195
BstBI TTCGAA 1 cut(s) 410
BstC8I GCNNGC 2 cut(s) 114, 321
BstDEI CTNAG 2 cut(s) 117, 324
BstEII GGTNACC 1 cut(s) 259
BstF5I GGATG 1 cut(s) 390
BstKTI GATC 1 cut(s) 77
BstMBI GATC 1 cut(s) 74
BstMWI GCNNNNNNNGC 1 cut(s) 195
BstNSI RCATGY 3 cut(s) 116, 198, 323
BstPI GGTNACC 1 cut(s) 259
BstV1I GCAGC 2 cut(s) 235, 373
BstX2I RGATCY 1 cut(s) 74
BstYI RGATCY 1 cut(s) 74
BtsCI GGATG 1 cut(s) 390
Cac8I GCNNGC 2 cut(s) 114, 321
CviAII CATG 3 cut(s) 113, 195, 320
CviJI RGCY 5 cut(s) 43, 64, 250, 271, 454
CviKI_1 RGCY 5 cut(s) 43, 64, 250, 271, 454
DdeI CTNAG 2 cut(s) 117, 324
DpnI GATC 1 cut(s) 76
DpnII GATC 1 cut(s) 74
Eco88I CYCGRG 1 cut(s) 314
Eco91I GGTNACC 1 cut(s) 259
EcoO65I GGTNACC 1 cut(s) 259
FaeI CATG 3 cut(s) 116, 198, 323
FatI CATG 3 cut(s) 112, 194, 319
FauI CCCGC 1 cut(s) 191
Fnu4HI GCNGC 2 cut(s) 224, 362
FokI GGATG 1 cut(s) 397
Fsp4HI GCNGC 2 cut(s) 224, 362
GluI GCNGC 2 cut(s) 224, 362
Hin1II CATG 3 cut(s) 116, 198, 323
HinfI GANTC 1 cut(s) 84
Hpy166II GTNNAC 3 cut(s) 54, 145, 356
Hpy188I TCNGA 3 cut(s) 120, 163, 327
Hpy188III TCNNGA 2 cut(s) 107, 276
Hpy8I GTNNAC 3 cut(s) 54, 145, 356
HpyCH4III ACNGT 1 cut(s) 421
HpyCH4V TGCA 2 cut(s) 19, 151
HpyF10VI GCNNNNNNNGC 1 cut(s) 195
HpyF3I CTNAG 2 cut(s) 117, 324
Hsp92II CATG 3 cut(s) 116, 198, 323
Kzo9I GATC 1 cut(s) 74
LpnPI CCDG 4 cut(s) 202, 289, 354, 440
Lsp1109I GCAGC 2 cut(s) 235, 373
LweI GCATC 1 cut(s) 6
MaeIII GTNAC 1 cut(s) 259
MalI GATC 1 cut(s) 76
MboI GATC 1 cut(s) 74
MboII GAAGA 1 cut(s) 346
MflI RGATCY 1 cut(s) 74
MluCI AATT 4 cut(s) 89, 121, 291, 328
MnlI CCTC 3 cut(s) 65, 250, 272
MseI TTAA 4 cut(s) 45, 179, 252, 378
MslI CAYNNNNRTG 2 cut(s) 162, 422
MspCI CTTAAG 1 cut(s) 44
Mva1269I GAATGC 1 cut(s) 157
MwoI GCNNNNNNNGC 1 cut(s) 195
NdeII GATC 1 cut(s) 74
NlaIII CATG 3 cut(s) 116, 198, 323
NspI RCATGY 3 cut(s) 116, 198, 323
NspV TTCGAA 1 cut(s) 410
OliI CACNNNNGTG 1 cut(s) 422
PaeI GCATGC 2 cut(s) 116, 323
PaeR7I CTCGAG 1 cut(s) 314
PctI GAATGC 1 cut(s) 157
PfeI GAWTC 1 cut(s) 84
PkrI GCNGC 2 cut(s) 225, 363
PspEI GGTNACC 1 cut(s) 259
PspXI VCTCGAGB 1 cut(s) 314
PsuI RGATCY 1 cut(s) 74
RseI CAYNNNNRTG 2 cut(s) 162, 422
SaqAI TTAA 4 cut(s) 45, 179, 252, 378
SatI GCNGC 2 cut(s) 224, 362
Sau3AI GATC 1 cut(s) 74
SfaNI GCATC 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 314
SfuI TTCGAA 1 cut(s) 410
SlaI CTCGAG 1 cut(s) 314
SmiMI CAYNNNNRTG 2 cut(s) 162, 422
SmlI CTYRAG 4 cut(s) 44, 107, 245, 314
SmoI CTYRAG 4 cut(s) 44, 107, 245, 314
SphI GCATGC 2 cut(s) 116, 323
Sse9I AATT 4 cut(s) 89, 121, 291, 328
SsiI CCGC 2 cut(s) 198, 359
TaaI ACNGT 1 cut(s) 421
TaqI TCGA 3 cut(s) 315, 410, 439
TasI AATT 4 cut(s) 89, 121, 291, 328
TfiI GAWTC 1 cut(s) 84
Tru1I TTAA 4 cut(s) 45, 179, 252, 378
Tru9I TTAA 4 cut(s) 45, 179, 252, 378
TseI GCWGC 2 cut(s) 223, 361
Vha464I CTTAAG 1 cut(s) 44
XapI RAATTY 2 cut(s) 121, 328
XceI RCATGY 3 cut(s) 116, 198, 323
XhoI CTCGAG 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.