Rh3AG187800

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
Physical Location & Seq
Forward (+)
17994223 .. 17994876
654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG187800.1

Sequence Viewer

Length: 456 bp
ATGTTGCAGGCTGCATACAGGGAGGAATGCGTGCAAGCTCAATTAGATGAGACTTGGTACTTGCAAATGAATATTGGTAGCTTTACTGATGATCTAGTCCCGGCAGTTGTCTCTCTCTTAAGAGGAACACCAGAGTTGTGTACTTTATACATTCGCTATAAACCAACTTCACTTGACCCTAAATCTAATACATCTGGGTTTGATATGGAGTATTGGAAGATGCAAAACCTGGATTTTGTTTCTCAGGTTGAGGATGTTACCATAGAGCTTAGTGCTGGGTTTAATGGAATTGAGTTAGCAAGGTATATACTTGAGCATGCTGAGAGCCTGGAGAAAATGGTCATTAGGTATTTAGCCGAGCAATCTAATGCTATAGGGAAATTAAAAGAAAGTAAGATGATCTCTAATCCCTTGGTCACTTTCGAGGAATATGATAGCTCAGTTACCTTATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

151

Amino Acids

17.27

Weight (kDa)

4.44

Isoelectric Point (pI)

46.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 59, 142
AflII CTTAAG 1 cut(s) 118
AjnI CCWGG 2 cut(s) 228, 327
AluBI AGCT 4 cut(s) 38, 81, 268, 438
AluI AGCT 4 cut(s) 38, 81, 268, 438
Alw26I GTCTC 2 cut(s) 44, 115
ApeKI GCWGC 1 cut(s) 11
AsuC2I CCSGG 1 cut(s) 101
BciT130I CCWGG 2 cut(s) 230, 329
BcnI CCSGG 1 cut(s) 101
BcoDI GTCTC 2 cut(s) 44, 115
BfaI CTAG 1 cut(s) 95
BfmI CTRYAG 1 cut(s) 372
BfrI CTTAAG 1 cut(s) 118
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
Bme1390I CCNGG 3 cut(s) 101, 230, 329
BmrFI CCNGG 3 cut(s) 101, 230, 329
BmsI GCATC 1 cut(s) 210
BpmI CTGGAG 1 cut(s) 350
BpuEI CTTGAG 1 cut(s) 332
BpuMI CCSGG 1 cut(s) 101
BsaJI CCNNGG 1 cut(s) 411
BseBI CCWGG 2 cut(s) 230, 329
BseDI CCNNGG 1 cut(s) 411
BseGI GGATG 1 cut(s) 259
BseMII CTCAG 3 cut(s) 257, 312, 453
BseYI CCCAGC 1 cut(s) 275
BsiSI CCGG 1 cut(s) 101
BslFI GGGAC 1 cut(s) 83
BsmAI GTCTC 2 cut(s) 44, 115
BsmFI GGGAC 1 cut(s) 83
BsmI GAATGC 1 cut(s) 32
Bsp143I GATC 2 cut(s) 91, 399
BspCNI CTCAG 3 cut(s) 256, 313, 452
BspTI CTTAAG 1 cut(s) 118
BssECI CCNNGG 1 cut(s) 411
BssMI GATC 2 cut(s) 91, 399
BssT1I CCWWGG 1 cut(s) 411
Bst2UI CCWGG 2 cut(s) 230, 329
BstAFI CTTAAG 1 cut(s) 118
BstC8I GCNNGC 4 cut(s) 9, 32, 36, 318
BstDEI CTNAG 4 cut(s) 243, 269, 321, 439
BstF5I GGATG 1 cut(s) 259
BstKTI GATC 2 cut(s) 94, 402
BstMAI GTCTC 2 cut(s) 44, 115
BstMBI GATC 2 cut(s) 91, 399
BstNI CCWGG 2 cut(s) 230, 329
BstNSI RCATGY 1 cut(s) 320
BstSCI CCNGG 3 cut(s) 99, 228, 327
BstSFI CTRYAG 1 cut(s) 372
BtsCI GGATG 1 cut(s) 259
Cac8I GCNNGC 4 cut(s) 9, 32, 36, 318
Csp6I GTAC 2 cut(s) 58, 141
CviAII CATG 1 cut(s) 317
CviJI RGCY 7 cut(s) 11, 38, 81, 268, 327, 356, 438
CviKI_1 RGCY 7 cut(s) 11, 38, 81, 268, 327, 356, 438
CviQI GTAC 2 cut(s) 58, 141
DdeI CTNAG 4 cut(s) 243, 269, 321, 439
DpnI GATC 2 cut(s) 93, 401
DpnII GATC 2 cut(s) 91, 399
Eco130I CCWWGG 1 cut(s) 411
EcoRII CCWGG 2 cut(s) 228, 327
EcoT14I CCWWGG 1 cut(s) 411
ErhI CCWWGG 1 cut(s) 411
FaeI CATG 1 cut(s) 320
FaqI GGGAC 1 cut(s) 83
FatI CATG 1 cut(s) 316
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 1 cut(s) 266
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 1 cut(s) 95
GluI GCNGC 1 cut(s) 12
GsaI CCCAGC 1 cut(s) 279
GsuI CTGGAG 1 cut(s) 350
HapII CCGG 1 cut(s) 101
Hin1II CATG 1 cut(s) 320
HpaII CCGG 1 cut(s) 101
Hpy166II GTNNAC 1 cut(s) 141
Hpy8I GTNNAC 1 cut(s) 141
HpyCH4V TGCA 5 cut(s) 7, 14, 34, 64, 223
HpyF3I CTNAG 4 cut(s) 243, 269, 321, 439
Hsp92II CATG 1 cut(s) 320
Kzo9I GATC 2 cut(s) 91, 399
LweI GCATC 1 cut(s) 210
MaeI CTAG 1 cut(s) 95
MaeIII GTNAC 3 cut(s) 256, 415, 442
MalI GATC 2 cut(s) 93, 401
MboI GATC 2 cut(s) 91, 399
MboII GAAGA 1 cut(s) 229
MluCI AATT 3 cut(s) 41, 288, 380
MnlI CCTC 4 cut(s) 16, 116, 244, 418
MseI TTAA 3 cut(s) 119, 282, 383
MspCI CTTAAG 1 cut(s) 118
MspI CCGG 1 cut(s) 101
MspR9I CCNGG 3 cut(s) 101, 230, 329
Mva1269I GAATGC 1 cut(s) 32
MvaI CCWGG 2 cut(s) 230, 329
NciI CCSGG 1 cut(s) 101
NdeII GATC 2 cut(s) 91, 399
NlaIII CATG 1 cut(s) 320
NmeAIII GCCGAG 1 cut(s) 382
NmuCI GTSAC 1 cut(s) 415
NspI RCATGY 1 cut(s) 320
PaeI GCATGC 1 cut(s) 320
PctI GAATGC 1 cut(s) 32
PkrI GCNGC 1 cut(s) 13
Psp6I CCWGG 2 cut(s) 228, 327
PspFI CCCAGC 1 cut(s) 275
PspGI CCWGG 2 cut(s) 228, 327
RsaI GTAC 2 cut(s) 59, 142
RsaNI GTAC 2 cut(s) 58, 141
SaqAI TTAA 3 cut(s) 119, 282, 383
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 2 cut(s) 91, 399
ScrFI CCNGG 3 cut(s) 101, 230, 329
SetI ASST 9 cut(s) 40, 83, 231, 249, 270, 305, 350, 440, 449
SfaNI GCATC 1 cut(s) 210
SfcI CTRYAG 1 cut(s) 372
SmlI CTYRAG 2 cut(s) 118, 311
SmoI CTYRAG 2 cut(s) 118, 311
SphI GCATGC 1 cut(s) 320
Sse9I AATT 3 cut(s) 41, 288, 380
SspI AATATT 1 cut(s) 73
SspMI CTAG 1 cut(s) 95
StyD4I CCNGG 3 cut(s) 99, 228, 327
StyI CCWWGG 1 cut(s) 411
TaqI TCGA 1 cut(s) 423
TasI AATT 3 cut(s) 41, 288, 380
TatI WGTACW 1 cut(s) 140
Tru1I TTAA 3 cut(s) 119, 282, 383
Tru9I TTAA 3 cut(s) 119, 282, 383
TseFI GTSAC 1 cut(s) 415
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 415
TspDTI ATGAA 1 cut(s) 83
Vha464I CTTAAG 1 cut(s) 118
XceI RCATGY 1 cut(s) 320
XspI CTAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.