RLG00000023956

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000241
Physical Location & Seq
Reverse (-)
30402627 .. 30406307
3681 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023956

Sequence Viewer

Length: 810 bp
ATGAAACAAAGGCGTAAGTTAGGGGATATTGCAAGTTGTGAAGGTGCAGGAGGTAGTGGTGGGAATGAGAGCGGGATAGACAGATTTAGCGATCTTCCGGATCAAGTTGCGCACCACATTCTTTCCTTCCTGGCTTTGCCGGACCTTAGTCGTCTGTGTTGTGTGTCCAAAAGGTGTGGAGAACTTTGTATATCTGCTCCCTTGCTGAATTTTGATGAATTTTCCTCGGATTCTATGTCCACGTGTTCCGGGCAGGCTTCATTTATGGATGGATCTGTGCCAGCTTCATTATATGATACTTCCGGTTTGTGTTTGATTATCGAAAGCTTTGTTGATGAGCTGGTCCCAGCATTGGTCTGTGTCTTCAGAAGAACACCTAATTTGAGTTTGTTATGCATAAAGTCTAAACCACCACATAACCCTCAATCTAATACATTTGGGTTTAATATGGAATACTGGAAGCTGCAAGACCTTGCTTTTACTAATCAGCTTAAGCATGTGACTATAGAGCTTTGCAGTGGGTCTAATGGAATTGAGCTGGCAAAGTATATGCTCAAGTATGCTCTCAATATGCAGAGAATGGTTGTGATTTGTTTGCCCATAGATTTGAAGAAGGTTACAAGGAAACTAAAGAAAATCAAGATGATTTCCAATGCTGTACTTGTTATTGAGAAAAAGGTTCAGAATGAAGCTTCGCCTTTGCCTCTGACTTCAACTAACTTCAAGGCTGGGAGCGTATTGAATGGGAACGGGAAGAGAATTGTTCGTTATGTCCAATCAAATGGGATGGAGTGGCTTCCCCATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

270

Amino Acids

29.64

Weight (kDa)

8.6

Isoelectric Point (pI)

39.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 29 - 67 1.4e-06 F-box domain
F-box-like PF12937 29 - 63 9.3e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 111
AccBSI CCGCTC 1 cut(s) 72
AccIII TCCGGA 1 cut(s) 97
AciI CCGC 1 cut(s) 72
AclWI GGATC 2 cut(s) 108, 280
AcsI RAATTY 2 cut(s) 208, 218
AcuI CTGAAG 1 cut(s) 349
AcvI CACGTG 1 cut(s) 243
AfaI GTAC 1 cut(s) 660
AfiI CCNNNNNNNGG 1 cut(s) 352
AflII CTTAAG 1 cut(s) 491
AflIII ACRYGT 1 cut(s) 242
AgsI TTSAA 4 cut(s) 610, 714, 724, 742
AjnI CCWGG 1 cut(s) 129
AluBI AGCT 8 cut(s) 284, 327, 340, 463, 490, 511, 538, 692
AluI AGCT 8 cut(s) 284, 327, 340, 463, 490, 511, 538, 692
AlwI GGATC 2 cut(s) 108, 280
Aor13HI TCCGGA 1 cut(s) 97
ApeKI GCWGC 1 cut(s) 463
ApoI RAATTY 2 cut(s) 208, 218
AspLEI GCGC 1 cut(s) 112
AspS9I GGNCC 2 cut(s) 142, 343
AsuC2I CCSGG 1 cut(s) 250
AvaII GGWCC 2 cut(s) 142, 343
BbrPI CACGTG 1 cut(s) 243
BbsI GAAGAC 1 cut(s) 355
BbvI GCAGC 1 cut(s) 450
BccI CCATC 2 cut(s) 263, 781
BciT130I CCWGG 1 cut(s) 131
BcnI CCSGG 1 cut(s) 250
BfmI CTRYAG 1 cut(s) 504
BfrI CTTAAG 1 cut(s) 491
BisI GCNGC 1 cut(s) 464
BlsI GCNGC 1 cut(s) 465
Bme1390I CCNGG 2 cut(s) 131, 250
Bme18I GGWCC 2 cut(s) 142, 343
BmgT120I GGNCC 2 cut(s) 142, 343
BmiI GGNNCC 1 cut(s) 345
BmrFI CCNGG 2 cut(s) 131, 250
BoxI GACNNNNGTC 1 cut(s) 147
BpiI GAAGAC 1 cut(s) 355
BpuEI CTTGAG 1 cut(s) 539
BpuMI CCSGG 1 cut(s) 250
BsaAI YACGTR 1 cut(s) 243
BsaJI CCNNGG 1 cut(s) 225
BsaWI WCCGGW 2 cut(s) 97, 302
Bsc4I CCNNNNNNNGG 1 cut(s) 352
Bse1I ACTGG 1 cut(s) 461
BseAI TCCGGA 1 cut(s) 97
BseBI CCWGG 1 cut(s) 131
BseDI CCNNGG 1 cut(s) 225
BseGI GGATG 2 cut(s) 274, 792
BseLI CCNNNNNNNGG 1 cut(s) 352
BseNI ACTGG 1 cut(s) 461
BseXI GCAGC 1 cut(s) 450
BseYI CCCAGC 2 cut(s) 346, 728
BsgI GTGCAG 1 cut(s) 66
BsiSI CCGG 4 cut(s) 98, 140, 249, 303
BslFI GGGAC 1 cut(s) 329
BslI CCNNNNNNNGG 1 cut(s) 352
BsmFI GGGAC 1 cut(s) 329
Bsp13I TCCGGA 1 cut(s) 97
Bsp143I GATC 3 cut(s) 91, 100, 272
BspACI CCGC 1 cut(s) 72
BspEI TCCGGA 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 345
BspPI GGATC 2 cut(s) 108, 280
BspTI CTTAAG 1 cut(s) 491
BsrBI CCGCTC 1 cut(s) 72
BsrI ACTGG 1 cut(s) 461
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 3 cut(s) 91, 100, 272
Bst2UI CCWGG 1 cut(s) 131
Bst6I CTCTTC 1 cut(s) 749
BstAFI CTTAAG 1 cut(s) 491
BstBAI YACGTR 1 cut(s) 243
BstC8I GCNNGC 3 cut(s) 255, 282, 540
BstDEI CTNAG 1 cut(s) 146
BstF5I GGATG 2 cut(s) 274, 792
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 3 cut(s) 94, 103, 275
BstMBI GATC 3 cut(s) 91, 100, 272
BstNI CCWGG 1 cut(s) 131
BstNSI RCATGY 1 cut(s) 500
BstPAI GACNNNNGTC 1 cut(s) 147
BstSCI CCNGG 2 cut(s) 129, 248
BstSFI CTRYAG 1 cut(s) 504
BstV1I GCAGC 1 cut(s) 450
BstV2I GAAGAC 1 cut(s) 355
BstX2I RGATCY 1 cut(s) 272
BstXI CCANNNNNNTGG 1 cut(s) 782
BstYI RGATCY 1 cut(s) 272
BtsCI GGATG 2 cut(s) 274, 792
BtsI GCAGTG 1 cut(s) 523
BtsIMutI CAGTG 1 cut(s) 523
Cac8I GCNNGC 3 cut(s) 255, 282, 540
CfoI GCGC 1 cut(s) 112
Cfr13I GGNCC 2 cut(s) 142, 343
Csp6I GTAC 1 cut(s) 659
CspCI CAANNNNNGTGG 2 cut(s) 157, 192
CviAII CATG 2 cut(s) 497, 803
CviQI GTAC 1 cut(s) 659
DdeI CTNAG 1 cut(s) 146
DpnI GATC 3 cut(s) 93, 102, 274
DpnII GATC 3 cut(s) 91, 100, 272
Eam1104I CTCTTC 1 cut(s) 749
EarI CTCTTC 1 cut(s) 749
Eco47I GGWCC 2 cut(s) 142, 343
Eco57I CTGAAG 1 cut(s) 349
Eco72I CACGTG 1 cut(s) 243
EcoRII CCWGG 1 cut(s) 129
EcoT22I ATGCAT 1 cut(s) 398
FaeI CATG 2 cut(s) 500, 806
FaqI GGGAC 1 cut(s) 329
FatI CATG 2 cut(s) 496, 802
FauI CCCGC 1 cut(s) 65
Fnu4HI GCNGC 1 cut(s) 464
FokI GGATG 2 cut(s) 281, 799
Fsp4HI GCNGC 1 cut(s) 464
FspI TGCGCA 1 cut(s) 111
GlaI GCGC 1 cut(s) 111
GluI GCNGC 1 cut(s) 464
GsaI CCCAGC 2 cut(s) 350, 732
HapII CCGG 4 cut(s) 98, 140, 249, 303
HhaI GCGC 1 cut(s) 112
Hin1II CATG 2 cut(s) 500, 806
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HindIII AAGCTT 2 cut(s) 325, 690
HinfI GANTC 1 cut(s) 230
HpaII CCGG 4 cut(s) 98, 140, 249, 303
Hpy166II GTNNAC 1 cut(s) 240
Hpy188I TCNGA 4 cut(s) 229, 368, 684, 708
Hpy188III TCNNGA 2 cut(s) 98, 640
Hpy8I GTNNAC 1 cut(s) 240
HpyAV CCTTC 3 cut(s) 35, 136, 607
HpyCH4IV ACGT 1 cut(s) 242
HpyCH4V TGCA 6 cut(s) 32, 47, 396, 466, 516, 574
HpyF3I CTNAG 1 cut(s) 146
HpySE526I ACGT 1 cut(s) 242
Hsp92II CATG 2 cut(s) 500, 806
HspAI GCGC 1 cut(s) 110
Kpn2I TCCGGA 1 cut(s) 97
Kzo9I GATC 3 cut(s) 91, 100, 272
LmnI GCTCC 2 cut(s) 202, 732
Lsp1109I GCAGC 1 cut(s) 450
MaeII ACGT 1 cut(s) 242
MaeIII GTNAC 2 cut(s) 499, 616
MalI GATC 3 cut(s) 93, 102, 274
MbiI CCGCTC 1 cut(s) 72
MboI GATC 3 cut(s) 91, 100, 272
MboII GAAGA 5 cut(s) 86, 355, 381, 622, 766
MflI RGATCY 1 cut(s) 272
MluCI AATT 5 cut(s) 208, 218, 379, 531, 759
MnlI CCTC 4 cut(s) 44, 235, 432, 714
Mph1103I ATGCAT 1 cut(s) 398
MroI TCCGGA 1 cut(s) 97
MseI TTAA 3 cut(s) 444, 492, 808
MspCI CTTAAG 1 cut(s) 491
MspI CCGG 4 cut(s) 98, 140, 249, 303
MspR9I CCNGG 2 cut(s) 131, 250
MvaI CCWGG 1 cut(s) 131
NciI CCSGG 1 cut(s) 250
NdeII GATC 3 cut(s) 91, 100, 272
NlaIII CATG 2 cut(s) 500, 806
NlaIV GGNNCC 1 cut(s) 345
NmuCI GTSAC 1 cut(s) 499
NsbI TGCGCA 1 cut(s) 111
NsiI ATGCAT 1 cut(s) 398
NspI RCATGY 1 cut(s) 500
PfeI GAWTC 1 cut(s) 230
PkrI GCNGC 1 cut(s) 465
PmaCI CACGTG 1 cut(s) 243
PmlI CACGTG 1 cut(s) 243
Ppu21I YACGTR 1 cut(s) 243
PshAI GACNNNNGTC 1 cut(s) 147
Psp6I CCWGG 1 cut(s) 129
PspCI CACGTG 1 cut(s) 243
PspFI CCCAGC 2 cut(s) 346, 728
PspGI CCWGG 1 cut(s) 129
PspN4I GGNNCC 1 cut(s) 345
PspPI GGNCC 2 cut(s) 142, 343
PsuI RGATCY 1 cut(s) 272
RsaI GTAC 1 cut(s) 660
RsaNI GTAC 1 cut(s) 659
SaqAI TTAA 3 cut(s) 444, 492, 808
SatI GCNGC 1 cut(s) 464
Sau3AI GATC 3 cut(s) 91, 100, 272
Sau96I GGNCC 2 cut(s) 142, 343
ScrFI CCNGG 2 cut(s) 131, 250
SfcI CTRYAG 1 cut(s) 504
SinI GGWCC 2 cut(s) 142, 343
SmlI CTYRAG 2 cut(s) 491, 554
SmoI CTYRAG 2 cut(s) 491, 554
Sse9I AATT 5 cut(s) 208, 218, 379, 531, 759
SsiI CCGC 1 cut(s) 72
StyD4I CCNGG 2 cut(s) 129, 248
TaiI ACGT 1 cut(s) 245
TaqI TCGA 1 cut(s) 321
TasI AATT 5 cut(s) 208, 218, 379, 531, 759
TatI WGTACW 1 cut(s) 658
TfiI GAWTC 1 cut(s) 230
Tru1I TTAA 3 cut(s) 444, 492, 808
Tru9I TTAA 3 cut(s) 444, 492, 808
TscAI CASTG 1 cut(s) 523
TseFI GTSAC 1 cut(s) 499
TseI GCWGC 1 cut(s) 463
Tsp45I GTSAC 1 cut(s) 499
TspDTI ATGAA 5 cut(s) 17, 231, 249, 276, 702
TspRI CASTG 1 cut(s) 523
Vha464I CTTAAG 1 cut(s) 491
VpaK11BI GGWCC 2 cut(s) 142, 343
XapI RAATTY 2 cut(s) 208, 218
XceI RCATGY 1 cut(s) 500
Zsp2I ATGCAT 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.