Prupe.7G105900_v2.0.a1

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000241
Physical Location & Seq
Reverse (-)
13476046 .. 13476719
674 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G105900.1

Sequence Viewer

Length: 423 bp
ATGCCACCACCATTAAATAATGTTTGTTCTCTGGATCTGCGGATTGGAAATGTTGTTGATGAGTTAGTCCCAGCTATGGTTTCTCTTTTTAGAGGAATGCCAAATTTGTGTAACATGCTCATAAATACTAAGCCACCTCTGGATGACCCTAAATCTAATACATCTGGGTTTAATACGGGATATTGGAAGATGCAAAACCTCGCTTTTATTAATCAGCTTAAGGATGTTACCATAAAGCTTTTTGATGGGTCTAATGGAGTTGAGCTAGTAAGGTATATGCTCGAGTGTGCTCAGAATTTGGAGAAAATGCTCATAATTTGTTTACCCCAGAATTTGGATGACAATATGAGGAGGTTAGACGAAAGCAAGAAAATTTCCCGTGCCACAGTACTGTTCCACGAAAGTCGAGACTTCTTACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

141

Amino Acids

15.93

Weight (kDa)

5.79

Isoelectric Point (pI)

36.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 334
AciI CCGC 1 cut(s) 40
AclWI GGATC 1 cut(s) 42
AcsI RAATTY 4 cut(s) 103, 295, 331, 372
AfaI GTAC 1 cut(s) 390
AfiI CCNNNNNNNGG 2 cut(s) 76, 334
AflII CTTAAG 1 cut(s) 218
AluBI AGCT 4 cut(s) 74, 217, 238, 265
AluI AGCT 4 cut(s) 74, 217, 238, 265
Alw21I GWGCWC 1 cut(s) 292
Alw26I GTCTC 1 cut(s) 402
AlwI GGATC 1 cut(s) 42
Ama87I CYCGRG 1 cut(s) 281
ApoI RAATTY 4 cut(s) 103, 295, 331, 372
AseI ATTAAT 1 cut(s) 210
AvaI CYCGRG 1 cut(s) 281
Bbv12I GWGCWC 1 cut(s) 292
BccI CCATC 1 cut(s) 239
BcoDI GTCTC 1 cut(s) 402
BfaI CTAG 1 cut(s) 266
BfrI CTTAAG 1 cut(s) 218
BmcAI AGTACT 1 cut(s) 390
BmeT110I CYCGRG 1 cut(s) 281
BmsI GCATC 1 cut(s) 180
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 334
BseGI GGATG 3 cut(s) 148, 229, 343
BseLI CCNNNNNNNGG 2 cut(s) 76, 334
BseMII CTCAG 1 cut(s) 305
BseRI GAGGAG 1 cut(s) 364
BseYI CCCAGC 1 cut(s) 70
BsiHKAI GWGCWC 1 cut(s) 292
BsiHKCI CYCGRG 1 cut(s) 281
BslFI GGGAC 1 cut(s) 53
BslI CCNNNNNNNGG 2 cut(s) 76, 334
BsmAI GTCTC 1 cut(s) 402
BsmFI GGGAC 1 cut(s) 53
BsmI GAATGC 1 cut(s) 102
BsoBI CYCGRG 1 cut(s) 281
Bsp1286I GDGCHC 1 cut(s) 292
Bsp143I GATC 1 cut(s) 34
BspACI CCGC 1 cut(s) 40
BspCNI CTCAG 1 cut(s) 304
BspPI GGATC 1 cut(s) 42
BspTI CTTAAG 1 cut(s) 218
BssMI GATC 1 cut(s) 34
Bst4CI ACNGT 3 cut(s) 388, 393, 420
BstAFI CTTAAG 1 cut(s) 218
BstDEI CTNAG 2 cut(s) 129, 291
BstF5I GGATG 3 cut(s) 148, 229, 343
BstKTI GATC 1 cut(s) 37
BstMAI GTCTC 1 cut(s) 402
BstMBI GATC 1 cut(s) 34
BstNSI RCATGY 1 cut(s) 118
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
BtsCI GGATG 3 cut(s) 148, 229, 343
Csp6I GTAC 1 cut(s) 389
CviAII CATG 1 cut(s) 115
CviJI RGCY 5 cut(s) 74, 133, 217, 238, 265
CviKI_1 RGCY 5 cut(s) 74, 133, 217, 238, 265
CviQI GTAC 1 cut(s) 389
DdeI CTNAG 2 cut(s) 129, 291
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
Eco88I CYCGRG 1 cut(s) 281
FaeI CATG 1 cut(s) 118
FaiI YATR 8 cut(s) 77, 116, 122, 233, 276, 278, 314, 347
FaqI GGGAC 1 cut(s) 53
FatI CATG 1 cut(s) 114
FokI GGATG 3 cut(s) 155, 236, 350
FspBI CTAG 1 cut(s) 266
GsaI CCCAGC 1 cut(s) 74
Hin1II CATG 1 cut(s) 118
HindIII AAGCTT 1 cut(s) 236
Hpy166II GTNNAC 1 cut(s) 323
Hpy188I TCNGA 1 cut(s) 294
Hpy188III TCNNGA 3 cut(s) 32, 140, 407
Hpy8I GTNNAC 1 cut(s) 323
HpyCH4III ACNGT 3 cut(s) 388, 393, 420
HpyCH4V TGCA 1 cut(s) 193
HpyF3I CTNAG 2 cut(s) 129, 291
Hsp92II CATG 1 cut(s) 118
Kzo9I GATC 1 cut(s) 34
LpnPI CCDG 5 cut(s) 17, 84, 125, 150, 341
LweI GCATC 1 cut(s) 180
MaeI CTAG 1 cut(s) 266
MaeIII GTNAC 2 cut(s) 110, 226
MalI GATC 1 cut(s) 36
MboI GATC 1 cut(s) 34
MboII GAAGA 1 cut(s) 199
MflI RGATCY 1 cut(s) 34
MhlI GDGCHC 1 cut(s) 292
MluCI AATT 5 cut(s) 103, 295, 315, 331, 372
MnlI CCTC 5 cut(s) 86, 147, 209, 342, 345
MseI TTAA 4 cut(s) 14, 171, 210, 219
MspCI CTTAAG 1 cut(s) 218
Mva1269I GAATGC 1 cut(s) 102
NdeII GATC 1 cut(s) 34
NlaIII CATG 1 cut(s) 118
NspI RCATGY 1 cut(s) 118
PaeR7I CTCGAG 1 cut(s) 281
PctI GAATGC 1 cut(s) 102
PflMI CCANNNNNTGG 1 cut(s) 334
PshBI ATTAAT 1 cut(s) 210
PspFI CCCAGC 1 cut(s) 70
PspXI VCTCGAGB 1 cut(s) 281
PsuI RGATCY 1 cut(s) 34
RsaI GTAC 1 cut(s) 390
RsaNI GTAC 1 cut(s) 389
SaqAI TTAA 4 cut(s) 14, 171, 210, 219
Sau3AI GATC 1 cut(s) 34
ScaI AGTACT 1 cut(s) 390
SduI GDGCHC 1 cut(s) 292
SetI ASST 8 cut(s) 76, 139, 201, 219, 240, 267, 275, 356
SfaNI GCATC 1 cut(s) 180
Sfr274I CTCGAG 1 cut(s) 281
SlaI CTCGAG 1 cut(s) 281
SmlI CTYRAG 2 cut(s) 218, 281
SmoI CTYRAG 2 cut(s) 218, 281
Sse9I AATT 5 cut(s) 103, 295, 315, 331, 372
SsiI CCGC 1 cut(s) 40
SspMI CTAG 1 cut(s) 266
TaaI ACNGT 3 cut(s) 388, 393, 420
TaqI TCGA 2 cut(s) 282, 406
TasI AATT 5 cut(s) 103, 295, 315, 331, 372
TatI WGTACW 1 cut(s) 388
Tru1I TTAA 4 cut(s) 14, 171, 210, 219
Tru9I TTAA 4 cut(s) 14, 171, 210, 219
Van91I CCANNNNNTGG 1 cut(s) 334
Vha464I CTTAAG 1 cut(s) 218
VspI ATTAAT 1 cut(s) 210
XapI RAATTY 4 cut(s) 103, 295, 331, 372
XceI RCATGY 1 cut(s) 118
XhoI CTCGAG 1 cut(s) 281
XspI CTAG 1 cut(s) 266
ZrmI AGTACT 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.