Rh3DG214400

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000241
Physical Location & Seq
Forward (+)
19770773 .. 19771711
939 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG214400.1

Sequence Viewer

Length: 939 bp
ATGGCTAACGCAAGTTGTGAAGCTGAAGGAGGAGGTTGTCTTAAGGATGAGATTATGGTAGGAAGATTTGTTAATCTTCCGGATCAAGTTGTGCATCACATCGTTTCTTTCCTAGCTATCACTGACCTCACTCGTTTCGGCTGTGTGTCCAAGAAGTGTAGAGAACTTTATCTAACAAGTCCATCCTTGAAGTTTGATGAATTTTCCTTGGCTAACACATCCTCATGTTATAAACGGATGAATTTGTTGAGGTCTTTGGATAAGTTCTTGATTCATCGTGGGGAGAATAAGATACACCAATTTTGTATTCGTTGGGTTCCCCCCGAGAACTTTGACCATGAAACACCATGCTTTTGTGGTTGTAATGAGAAGTCTGGAATGATGGCTTGGATACACTATGCAGTAAGGTGTAAAGTGGAAGTGCTTGATCTTGAGATCTCTATATTTGAGAAGGCGATGCCATTAGCATTTCCATTTTTCATCCTTCAGTGTAAATCTTTGAGGTCTCTATCGCTGGACATGAATTGTATGATTCATACACCCTCTTTCACCGTTTTCTCTAGTCTCAAGTGCTTGGAGCTGAAAAATGTTAGAATATTGAATGAGTCATTTTTCAAATGGATCTCAAATTCCTGCAAATGCATTGAGGAATTAGATCTTGATGATGTCCATGGAATTAGAAATATCAACATTGAGAGCCCTTCTTTGAAATCATTTAAATTTGGGTCTTGCAATCAGACTCGCTTCTGTCATCTTAAAATCTCTGGTGAGAAACTCATATCCATATTTGTCTACTGGAGTTTTTATTCATCTCTCAACAAATCGTTTAGTCTTTCTGCTCCGAATCTAGAAAGATTTTATTGGTTTGGGAATTTGTTGGATCACTCAAATCTCGGAGAAACGGTATGTTTAGAAGATGTTGGATTTTATAGAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

312

Amino Acids

35.89

Weight (kDa)

7.08

Isoelectric Point (pI)

50.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 25 - 56 1e-05 F-box domain
LRR_At1g61320_AtMIF1 PF23622 124 - 248 9.2e-09 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 129 - 245 1.9e-09 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 231
AccI GTMKAC 1 cut(s) 792
AccIII TCCGGA 1 cut(s) 79
AclWI GGATC 3 cut(s) 90, 629, 888
AcsI RAATTY 5 cut(s) 200, 241, 628, 719, 871
AcuI CTGAAG 2 cut(s) 45, 470
AflII CTTAAG 1 cut(s) 41
AgsI TTSAA 4 cut(s) 190, 601, 616, 709
AjuI GAANNNNNNNTTGG 4 cut(s) 291, 323, 370, 402
AluBI AGCT 3 cut(s) 23, 116, 580
AluI AGCT 3 cut(s) 23, 116, 580
Alw26I GTCTC 2 cut(s) 510, 569
AlwI GGATC 3 cut(s) 90, 629, 888
Ama87I CYCGRG 1 cut(s) 323
Aor13HI TCCGGA 1 cut(s) 79
ApoI RAATTY 5 cut(s) 200, 241, 628, 719, 871
AsuHPI GGTGA 2 cut(s) 541, 779
AvaI CYCGRG 1 cut(s) 323
BanII GRGCYC 1 cut(s) 701
BccI CCATC 2 cut(s) 190, 376
BciVI GTATCC 1 cut(s) 384
BcoDI GTCTC 2 cut(s) 510, 569
BfaI CTAG 3 cut(s) 113, 561, 848
BfrI CTTAAG 1 cut(s) 41
BfuI GTATCC 1 cut(s) 384
BglII AGATCT 2 cut(s) 435, 655
BmeT110I CYCGRG 1 cut(s) 323
BmiI GGNNCC 1 cut(s) 318
BmsI GCATC 2 cut(s) 103, 447
BpmI CTGGAG 1 cut(s) 817
BpuEI CTTGAG 2 cut(s) 452, 551
BsaI GGTCTC 1 cut(s) 510
BsaJI CCNNGG 2 cut(s) 207, 670
BsaWI WCCGGW 1 cut(s) 79
BsaXI ACNNNNNCTCC 2 cut(s) 888, 918
Bse1I ACTGG 1 cut(s) 800
BseAI TCCGGA 1 cut(s) 79
BseDI CCNNGG 2 cut(s) 207, 670
BseGI GGATG 5 cut(s) 52, 182, 218, 243, 480
BseNI ACTGG 1 cut(s) 800
BseRI GAGGAG 1 cut(s) 45
BsiHKCI CYCGRG 1 cut(s) 323
BsiSI CCGG 1 cut(s) 80
BsmAI GTCTC 2 cut(s) 510, 569
Bso31I GGTCTC 1 cut(s) 510
BsoBI CYCGRG 1 cut(s) 323
Bsp1286I GDGCHC 1 cut(s) 701
Bsp13I TCCGGA 1 cut(s) 79
Bsp143I GATC 6 cut(s) 82, 427, 435, 621, 655, 880
Bsp19I CCATGG 1 cut(s) 670
BspEI TCCGGA 1 cut(s) 79
BspLI GGNNCC 1 cut(s) 318
BspPI GGATC 3 cut(s) 90, 629, 888
BspTI CTTAAG 1 cut(s) 41
BspTNI GGTCTC 1 cut(s) 510
BsrI ACTGG 1 cut(s) 800
BssECI CCNNGG 2 cut(s) 207, 670
BssMI GATC 6 cut(s) 82, 427, 435, 621, 655, 880
BssT1I CCWWGG 2 cut(s) 207, 670
Bst4CI ACNGT 2 cut(s) 553, 904
BstAFI CTTAAG 1 cut(s) 41
BstDSI CCRYGG 1 cut(s) 670
BstF5I GGATG 5 cut(s) 52, 182, 218, 243, 480
BstKTI GATC 6 cut(s) 85, 430, 438, 624, 658, 883
BstMAI GTCTC 2 cut(s) 510, 569
BstMBI GATC 6 cut(s) 82, 427, 435, 621, 655, 880
BstX2I RGATCY 3 cut(s) 435, 621, 655
BstYI RGATCY 3 cut(s) 435, 621, 655
BsuI GTATCC 1 cut(s) 384
BtgI CCRYGG 1 cut(s) 670
BtgZI GCGATG 1 cut(s) 470
BtsCI GGATG 5 cut(s) 52, 182, 218, 243, 480
BtsIMutI CAGTG 2 cut(s) 120, 494
CviAII CATG 5 cut(s) 225, 338, 348, 520, 671
CviJI RGCY 8 cut(s) 5, 23, 116, 141, 212, 386, 580, 699
CviKI_1 RGCY 8 cut(s) 5, 23, 116, 141, 212, 386, 580, 699
DpnI GATC 6 cut(s) 84, 429, 437, 623, 657, 882
DpnII GATC 6 cut(s) 82, 427, 435, 621, 655, 880
DraI TTTAAA 1 cut(s) 718
Eco130I CCWWGG 2 cut(s) 207, 670
Eco24I GRGCYC 1 cut(s) 701
Eco31I GGTCTC 1 cut(s) 510
Eco57I CTGAAG 2 cut(s) 45, 470
Eco88I CYCGRG 1 cut(s) 323
EcoT14I CCWWGG 2 cut(s) 207, 670
EcoT22I ATGCAT 1 cut(s) 644
EcoT38I GRGCYC 1 cut(s) 701
ErhI CCWWGG 2 cut(s) 207, 670
FaeI CATG 5 cut(s) 228, 341, 351, 523, 674
FatI CATG 5 cut(s) 224, 337, 347, 519, 670
FblI GTMKAC 1 cut(s) 792
FokI GGATG 5 cut(s) 59, 169, 205, 250, 467
FriOI GRGCYC 1 cut(s) 701
FspBI CTAG 3 cut(s) 113, 561, 848
GsuI CTGGAG 1 cut(s) 817
HapII CCGG 1 cut(s) 80
Hin1II CATG 5 cut(s) 228, 341, 351, 523, 674
HinfI GANTC 6 cut(s) 271, 532, 605, 739, 844, 933
HpaII CCGG 1 cut(s) 80
HphI GGTGA 2 cut(s) 541, 779
Hpy166II GTNNAC 1 cut(s) 793
Hpy188I TCNGA 4 cut(s) 738, 843, 896, 938
Hpy188III TCNNGA 6 cut(s) 80, 268, 375, 431, 659, 848
Hpy8I GTNNAC 1 cut(s) 793
HpyAV CCTTC 4 cut(s) 20, 445, 494, 711
HpyCH4III ACNGT 2 cut(s) 553, 904
HpyCH4V TGCA 5 cut(s) 94, 401, 636, 642, 732
Hsp92II CATG 5 cut(s) 228, 341, 351, 523, 674
Kpn2I TCCGGA 1 cut(s) 79
Kzo9I GATC 6 cut(s) 82, 427, 435, 621, 655, 880
LmnI GCTCC 2 cut(s) 577, 844
LpnPI CCDG 6 cut(s) 93, 360, 500, 646, 750, 781
LweI GCATC 2 cut(s) 103, 447
MaeI CTAG 3 cut(s) 113, 561, 848
MalI GATC 6 cut(s) 84, 429, 437, 623, 657, 882
MboI GATC 6 cut(s) 82, 427, 435, 621, 655, 880
MboII GAAGA 3 cut(s) 68, 75, 926
MflI RGATCY 3 cut(s) 435, 621, 655
MhlI GDGCHC 1 cut(s) 701
MluCI AATT 9 cut(s) 200, 241, 299, 523, 628, 650, 675, 719, 871
MlyI GAGTC 2 cut(s) 614, 733
MmeI TCCRAC 2 cut(s) 858, 901
MnlI CCTC 8 cut(s) 23, 26, 137, 232, 243, 495, 553, 640
Mph1103I ATGCAT 1 cut(s) 644
MroI TCCGGA 1 cut(s) 79
MseI TTAA 4 cut(s) 42, 72, 717, 756
MslI CAYNNNNRTG 1 cut(s) 223
MspCI CTTAAG 1 cut(s) 41
MspI CCGG 1 cut(s) 80
NcoI CCATGG 1 cut(s) 670
NdeII GATC 6 cut(s) 82, 427, 435, 621, 655, 880
NlaIII CATG 5 cut(s) 228, 341, 351, 523, 674
NlaIV GGNNCC 1 cut(s) 318
NsiI ATGCAT 1 cut(s) 644
PfeI GAWTC 3 cut(s) 271, 532, 844
PleI GAGTC 2 cut(s) 613, 733
PpsI GAGTC 2 cut(s) 613, 733
PsiI TTATAA 1 cut(s) 231
PspN4I GGNNCC 1 cut(s) 318
PsuI RGATCY 3 cut(s) 435, 621, 655
RseI CAYNNNNRTG 1 cut(s) 223
SaqAI TTAA 4 cut(s) 42, 72, 717, 756
Sau3AI GATC 6 cut(s) 82, 427, 435, 621, 655, 880
SchI GAGTC 2 cut(s) 614, 733
SduI GDGCHC 1 cut(s) 701
SetI ASST 8 cut(s) 25, 37, 118, 129, 254, 410, 506, 582
SfaNI GCATC 2 cut(s) 103, 447
SmiI ATTTAAAT 1 cut(s) 718
SmiMI CAYNNNNRTG 1 cut(s) 223
SmlI CTYRAG 3 cut(s) 41, 431, 566
SmoI CTYRAG 3 cut(s) 41, 431, 566
Sse9I AATT 9 cut(s) 200, 241, 299, 523, 628, 650, 675, 719, 871
SspI AATATT 1 cut(s) 597
SspMI CTAG 3 cut(s) 113, 561, 848
StyI CCWWGG 2 cut(s) 207, 670
SwaI ATTTAAAT 1 cut(s) 718
TaaI ACNGT 2 cut(s) 553, 904
TasI AATT 9 cut(s) 200, 241, 299, 523, 628, 650, 675, 719, 871
TfiI GAWTC 3 cut(s) 271, 532, 844
Tru1I TTAA 4 cut(s) 42, 72, 717, 756
Tru9I TTAA 4 cut(s) 42, 72, 717, 756
TscAI CASTG 2 cut(s) 127, 494
TspDTI ATGAA 8 cut(s) 213, 254, 263, 354, 469, 524, 536, 798
TspGWI ACGGA 1 cut(s) 250
TspRI CASTG 2 cut(s) 127, 494
Vha464I CTTAAG 1 cut(s) 41
XapI RAATTY 5 cut(s) 200, 241, 628, 719, 871
XbaI TCTAGA 1 cut(s) 847
XmiI GTMKAC 1 cut(s) 792
XspI CTAG 3 cut(s) 113, 561, 848
Zsp2I ATGCAT 1 cut(s) 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.