Rw3G017170

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000241
Physical Location & Seq
Forward (+)
18577819 .. 18578735
917 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G017170.1

Sequence Viewer

Length: 543 bp
ATGGAGCCTATAGTAGATGAGTTTAACAAAGTTTTTGAGGTTCTTTCCAGTTTGTGCAGTGTTGAAGTTCTTGTTCTAAATGAAGCTACCATCCAGGCTGCATACAGGGAGGAATGCATGCAAGCTCGATTGGATGAGATTTGGTACTTGCAAATGAATATTGGTAGCTTTGCTGATGATCTAGTCCCGGCAGTCGTCTGTCTTTTAAGAGGAACACCAGAGTTGTGTACTTTATACATTCGCTATAAACCAACTTCACTCGATCATAAATCTAATACATCTGGGTTTGATATGGAGTATTGGAAGATGCAAAACCTGGATTTTGTTTCTCAGGTTGAGGATGTTACCATAGAGCTTAGTGCTGGGTCTAATGGGATTGAGTTAGCTAGTTACATACTTGAGCATGCTGAGAGCCTGGAGAAAATGGTCATTAGGTATTTGGCCGAGCACTCTAATGCTATGGGGAAGTTAAAAGAAAGTAAGATGATCTCCAATCCCTTGGTTACTTTCAAGGAATATGATAGATCAGTTAGCTTATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

180

Amino Acids

20.53

Weight (kDa)

4.59

Isoelectric Point (pI)

39.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 441
AfaI GTAC 2 cut(s) 146, 229
AgsI TTSAA 2 cut(s) 65, 511
AjnI CCWGG 3 cut(s) 93, 315, 414
AluBI AGCT 6 cut(s) 86, 125, 168, 355, 386, 534
AluI AGCT 6 cut(s) 86, 125, 168, 355, 386, 534
Alw21I GWGCWC 1 cut(s) 450
AoxI GGCC 1 cut(s) 441
ApeKI GCWGC 1 cut(s) 98
AsuC2I CCSGG 1 cut(s) 188
Bbv12I GWGCWC 1 cut(s) 450
BbvI GCAGC 1 cut(s) 85
BccI CCATC 1 cut(s) 98
BciT130I CCWGG 3 cut(s) 95, 317, 416
BcnI CCSGG 1 cut(s) 188
BfaI CTAG 2 cut(s) 182, 387
BfmI CTRYAG 1 cut(s) 9
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
Bme1390I CCNGG 4 cut(s) 95, 188, 317, 416
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 4 cut(s) 95, 188, 317, 416
BmsI GCATC 1 cut(s) 297
BpmI CTGGAG 1 cut(s) 437
BpuEI CTTGAG 1 cut(s) 419
BpuMI CCSGG 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 498
Bse1I ACTGG 1 cut(s) 48
BseBI CCWGG 3 cut(s) 95, 317, 416
BseDI CCNNGG 1 cut(s) 498
BseGI GGATG 3 cut(s) 90, 139, 346
BseMII CTCAG 2 cut(s) 344, 399
BseNI ACTGG 1 cut(s) 48
BseXI GCAGC 1 cut(s) 85
BseYI CCCAGC 1 cut(s) 362
BsgI GTGCAG 1 cut(s) 76
BshFI GGCC 1 cut(s) 443
BsiHKAI GWGCWC 1 cut(s) 450
BsiSI CCGG 1 cut(s) 188
BslFI GGGAC 1 cut(s) 170
BsmFI GGGAC 1 cut(s) 170
BsmI GAATGC 1 cut(s) 119
BsnI GGCC 1 cut(s) 443
Bsp1286I GDGCHC 1 cut(s) 450
Bsp143I GATC 4 cut(s) 178, 262, 486, 524
BspANI GGCC 1 cut(s) 443
BspCNI CTCAG 2 cut(s) 343, 400
BspLI GGNNCC 1 cut(s) 6
BsrI ACTGG 1 cut(s) 48
BssECI CCNNGG 1 cut(s) 498
BssMI GATC 4 cut(s) 178, 262, 486, 524
BssT1I CCWWGG 1 cut(s) 498
Bst2UI CCWGG 3 cut(s) 95, 317, 416
BstC8I GCNNGC 3 cut(s) 119, 123, 405
BstDEI CTNAG 3 cut(s) 330, 356, 408
BstF5I GGATG 3 cut(s) 90, 139, 346
BstKTI GATC 4 cut(s) 181, 265, 489, 527
BstMBI GATC 4 cut(s) 178, 262, 486, 524
BstNI CCWGG 3 cut(s) 95, 317, 416
BstNSI RCATGY 2 cut(s) 121, 407
BstSCI CCNGG 4 cut(s) 93, 186, 315, 414
BstSFI CTRYAG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 85
BstXI CCANNNNNNTGG 1 cut(s) 499
BsuRI GGCC 1 cut(s) 443
BtsCI GGATG 3 cut(s) 90, 139, 346
BtsI GCAGTG 1 cut(s) 64
BtsIMutI CAGTG 1 cut(s) 64
Cac8I GCNNGC 3 cut(s) 119, 123, 405
Csp6I GTAC 2 cut(s) 145, 228
CviAII CATG 2 cut(s) 118, 404
CviQI GTAC 2 cut(s) 145, 228
DdeI CTNAG 3 cut(s) 330, 356, 408
DpnI GATC 4 cut(s) 180, 264, 488, 526
DpnII GATC 4 cut(s) 178, 262, 486, 524
EaeI YGGCCR 1 cut(s) 441
Eco130I CCWWGG 1 cut(s) 498
EcoRII CCWGG 3 cut(s) 93, 315, 414
EcoT14I CCWWGG 1 cut(s) 498
EcoT22I ATGCAT 1 cut(s) 119
ErhI CCWWGG 1 cut(s) 498
FaeI CATG 2 cut(s) 121, 407
FaqI GGGAC 1 cut(s) 170
FatI CATG 2 cut(s) 117, 403
Fnu4HI GCNGC 1 cut(s) 99
FokI GGATG 3 cut(s) 77, 146, 353
Fsp4HI GCNGC 1 cut(s) 99
FspBI CTAG 2 cut(s) 182, 387
GluI GCNGC 1 cut(s) 99
GsaI CCCAGC 1 cut(s) 366
GsuI CTGGAG 1 cut(s) 437
HaeIII GGCC 1 cut(s) 443
HapII CCGG 1 cut(s) 188
Hin1II CATG 2 cut(s) 121, 407
HpaII CCGG 1 cut(s) 188
Hpy166II GTNNAC 1 cut(s) 228
Hpy8I GTNNAC 1 cut(s) 228
HpyCH4V TGCA 6 cut(s) 57, 101, 117, 121, 151, 310
HpyF3I CTNAG 3 cut(s) 330, 356, 408
Hsp92II CATG 2 cut(s) 121, 407
Kzo9I GATC 4 cut(s) 178, 262, 486, 524
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 1 cut(s) 85
LweI GCATC 1 cut(s) 297
MaeI CTAG 2 cut(s) 182, 387
MaeIII GTNAC 3 cut(s) 343, 389, 502
MalI GATC 4 cut(s) 180, 264, 488, 526
MboI GATC 4 cut(s) 178, 262, 486, 524
MboII GAAGA 1 cut(s) 316
MhlI GDGCHC 1 cut(s) 450
MnlI CCTC 4 cut(s) 31, 103, 203, 331
Mph1103I ATGCAT 1 cut(s) 119
MseI TTAA 3 cut(s) 24, 206, 470
MslI CAYNNNNRTG 1 cut(s) 453
MspI CCGG 1 cut(s) 188
MspR9I CCNGG 4 cut(s) 95, 188, 317, 416
Mva1269I GAATGC 1 cut(s) 119
MvaI CCWGG 3 cut(s) 95, 317, 416
NciI CCSGG 1 cut(s) 188
NdeII GATC 4 cut(s) 178, 262, 486, 524
NlaIII CATG 2 cut(s) 121, 407
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 469
NsiI ATGCAT 1 cut(s) 119
NspI RCATGY 2 cut(s) 121, 407
PaeI GCATGC 2 cut(s) 121, 407
PctI GAATGC 1 cut(s) 119
PkrI GCNGC 1 cut(s) 100
Psp6I CCWGG 3 cut(s) 93, 315, 414
PspFI CCCAGC 1 cut(s) 362
PspGI CCWGG 3 cut(s) 93, 315, 414
PspN4I GGNNCC 1 cut(s) 6
RsaI GTAC 2 cut(s) 146, 229
RsaNI GTAC 2 cut(s) 145, 228
RseI CAYNNNNRTG 1 cut(s) 453
SaqAI TTAA 3 cut(s) 24, 206, 470
SatI GCNGC 1 cut(s) 99
Sau3AI GATC 4 cut(s) 178, 262, 486, 524
ScrFI CCNGG 4 cut(s) 95, 188, 317, 416
SduI GDGCHC 1 cut(s) 450
SfaNI GCATC 1 cut(s) 297
SfcI CTRYAG 1 cut(s) 9
SmiMI CAYNNNNRTG 1 cut(s) 453
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
SphI GCATGC 2 cut(s) 121, 407
SspI AATATT 1 cut(s) 160
SspMI CTAG 2 cut(s) 182, 387
StyD4I CCNGG 4 cut(s) 93, 186, 315, 414
StyI CCWWGG 1 cut(s) 498
TaqI TCGA 2 cut(s) 127, 261
TatI WGTACW 1 cut(s) 227
Tru1I TTAA 3 cut(s) 24, 206, 470
Tru9I TTAA 3 cut(s) 24, 206, 470
TscAI CASTG 1 cut(s) 64
TseI GCWGC 1 cut(s) 98
TspDTI ATGAA 2 cut(s) 96, 170
TspRI CASTG 1 cut(s) 64
XceI RCATGY 2 cut(s) 121, 407
XspI CTAG 2 cut(s) 182, 387
Zsp2I ATGCAT 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.