Rmu_sc0027615.1_g000001

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0027615.1
OG0000241
Physical Location & Seq
Reverse (-)
376 .. 5128
4753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0027615.1_g000001.1.cds

Sequence Viewer

Length: 2661 bp
atggaacgcaagggtaagttattggctagtggaaatggtgagactgacaggtttagcaatcttcccaaggaactccttgataagattctttcacgtcttctgattaacgacctggctcgcttatgctgcgtgtccaaaacatgcaaagatatgtctctgtccgctccgtctgtgagcatttgtggatttggtgtagatgaaatagcggagatgccgtgtgaagttcggttgaaactggtgaatgcattggataggttcttgcttagtcgcggggataatgagatgcggaaatttactcttgtttgggagggtcatcatgaggacgaggtcgaggaaccgccatgcttctgtgttaatgagagtttccgaatgatcacctggattcagaatgcactgaggtgtaatgttgaaaagctttttattgatgtgaccttttatgattgtgatggggaacttttagcatttccgtcttgcgtctttaattgtgcatctttgaggtctctagtggtagaaatgtcatttacggttgttaaaacaccctcatttacgttctcatctaatcttgagaccttggcattgagcgatgttgatattgcagacgaggggtttttcaagtggatatcatgttcgtgcaagctccttaaggaattgcgtcttgcaggacttaatgggatagataatatcaccattgaaagcttgtctttggaaaaatttagttatattcatttcgaggtgtatgaaacctgtcatattaacatttctggtgagaagcttgaagaaatacatattaactgcagttattcacctagaagcactgtgttgaacattattgctccaaatgtcaaatctttgaggttggagggaaatgtgaaaaataacctgaatctgggagacttaaattgtttagaacaagcttctattcttatggagcccatagtagatgagttcgacaaagtatatgatgttctttccagtttgtgcagtgtggaagttcttgtcctaaatgaagctaccatcaaggctgcttacagggaggaacgtatgcaagctcaattagatgagatttggtatttacaaatgaatattggtagctttactgattatctagtcccggcagtcgtctctctcttaagaggaacaccaaatttgtgtaccttatacatgtgttataaaccaacttcacttgaccctaaatctaatacgtctgggtttgatatggagtattggaagaagcaaaacctggattttatttctcaggttcaggacgttaccatagagctcagtgctgggtttaatggaattgagttagcaaggtatgtacttgagcatgcggagagcctggagaaaatggtcattaggttcatggcgcccaagcctaagaaaagggctattgcaagttgtgagggtgaaggaggaggttgtagcgagagtaagagaatgatagacagggttagtgatcttccggatcaggttgcacatcacattctttcgtttctaactgtgatggacctcgttcgagtgtgttgtgtgtccaaaagatggagagagctttctctgtctgccccgtgtttgaattttgatgagattccgtcgggttgtagatccacgtgccgtaaccggctgcagttgatgacgtatttggagaggtacttgtttcatcgtgggggtaataagatacagtcgttttgtgtcaattgggagcggcactatatggatgaaaatgaaactgtgtgcatctgtgctagcgagcattatcgactcatcacatggattaatagtgcggtgaggtgtaatgttgaagtgcttgaccttaagatgactctgtatgatcccgaggaggcaccgtttccgtctagcgtctttctctgtggaactttgaggtccctagcggtggatatgaattttactcttcttagaacgcccttgtttggtttttcctcaaatctcaccaagttggagttaaaagatgttgtgatagaggacgaccggtttttcaaatgggtctcatgttcctgcaagttcattgaggagttacatcttgatcaagttcgtggaattaaaactatcagtgttgaaagctcgtctctgaaaatattgaggttttttgatgtgttcaacacctcccatcttagcatatcaggtgagaaacttgaagacatagttgtgggctggtatgttgaatcacctagcaacagttccttaaatatttgtgccccaaatcttaggtgtttgagttggagtgggaaattgatgaatcacctaactctgggaaagttcagacatttagaagctgctgtgcttcgtcttaggcctgatgaaaatgaattagacaaagtgtatgaggttctttgcagtttatgcaaggttagagctcttatgctgaacgaagcaaccattaagacatctgggtttgatatgggatattggaagttgcaaaaccttgcttttattgatcagctgaaggtggtcagcatagaactttgcaatgactccaatgcaattgatttagcaaggtatattcttgagtgcgctcagaatttgctgcaaatgattgttatttatccaccccaggattcagagatcgttacaaggaagttaaaggaaagcaagatagcttctggtgccacagttgtctttcgtgaaaaagagaaaagtggataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

886

Amino Acids

100.64

Weight (kDa)

5.3

Isoelectric Point (pI)

42.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1170
AccB1I GGYRCC 3 cut(s) 1366, 1840, 2621
AccB7I CCANNNNNTGG 1 cut(s) 1539
AccBSI CCGCTC 2 cut(s) 164, 1702
AccII CGCG 1 cut(s) 270
AccIII TCCGGA 1 cut(s) 1462
AciI CCGC 9 cut(s) 162, 206, 270, 286, 338, 1331, 1702, 1781, 1889
AclWI GGATC 3 cut(s) 1473, 1596, 1823
AcsI RAATTY 6 cut(s) 290, 710, 1144, 1573, 1900, 2536
AcuI CTGAAG 1 cut(s) 2480
AcvI CACGTG 1 cut(s) 1608
AcyI GRCGYC 1 cut(s) 1367
AfaI GTAC 3 cut(s) 1153, 1320, 1649
AfiI CCNNNNNNNGG 5 cut(s) 886, 1539, 1891, 1928, 2266
AflII CTTAAG 3 cut(s) 641, 1129, 1811
AflIII ACRYGT 1 cut(s) 1161
AgeI ACCGGT 1 cut(s) 1986
AjiI CACGTC 1 cut(s) 95
AjnI CCWGG 5 cut(s) 111, 377, 1239, 1338, 2568
AleI CACNNNNGTG 1 cut(s) 397
AloI GAACNNNNNNTCC 2 cut(s) 610, 642
Alw21I GWGCWC 2 cut(s) 1281, 2374
Alw26I GTCTC 8 cut(s) 35, 159, 504, 560, 885, 1126, 2008, 2088
AlwI GGATC 3 cut(s) 1473, 1596, 1823
Ama87I CYCGRG 1 cut(s) 1832
Aor13HI TCCGGA 1 cut(s) 1462
AoxI GGCC 1 cut(s) 2309
ApeKI GCWGC 5 cut(s) 126, 1022, 1621, 2291, 2542
ApoI RAATTY 6 cut(s) 290, 710, 1144, 1573, 1900, 2536
AseI ATTAAT 1 cut(s) 1773
AsiGI ACCGGT 1 cut(s) 1986
AspLEI GCGC 2 cut(s) 1369, 2531
AspS9I GGNCC 2 cut(s) 1507, 1881
AsuC2I CCSGG 1 cut(s) 1112
AsuNHI GCTAGC 1 cut(s) 1742
AvaI CYCGRG 1 cut(s) 1832
AvaII GGWCC 2 cut(s) 1507, 1881
BaeGI GKGCMC 1 cut(s) 2215
BaeI ACNNNNGTAYC 2 cut(s) 1667, 1700
BanI GGYRCC 3 cut(s) 1366, 1840, 2621
BanII GRGCYC 3 cut(s) 933, 1281, 2374
BbrPI CACGTG 1 cut(s) 1608
BbsI GAAGAC 2 cut(s) 89, 2160
Bbv12I GWGCWC 2 cut(s) 1281, 2374
BbvI GCAGC 5 cut(s) 113, 1009, 1608, 2278, 2529
BccI CCATC 5 cut(s) 440, 1022, 1498, 1533, 2133
BceAI ACGGC 2 cut(s) 199, 1596
BciT130I CCWGG 5 cut(s) 113, 379, 1241, 1340, 2570
BclI TGATCA 3 cut(s) 372, 2041, 2452
BcnI CCSGG 1 cut(s) 1112
BcoDI GTCTC 8 cut(s) 35, 159, 504, 560, 885, 1126, 2008, 2088
BfaI CTAG 8 cut(s) 27, 503, 807, 1106, 1743, 1854, 1886, 2187
BfmI CTRYAG 2 cut(s) 793, 1622
BfoI RGCGCY 1 cut(s) 1370
BfrI CTTAAG 3 cut(s) 641, 1129, 1811
BisI GCNGC 6 cut(s) 127, 1023, 1622, 1703, 2292, 2543
BlsI GCNGC 6 cut(s) 128, 1024, 1623, 1704, 2293, 2544
Bme1390I CCNGG 6 cut(s) 113, 379, 1112, 1241, 1340, 2570
Bme18I GGWCC 2 cut(s) 1507, 1881
BmeT110I CYCGRG 1 cut(s) 1832
BmgBI CACGTC 1 cut(s) 95
BmgT120I GGNCC 2 cut(s) 1507, 1881
BmiI GGNNCC 6 cut(s) 336, 930, 1368, 1842, 1883, 2623
BmrFI CCNGG 6 cut(s) 113, 379, 1112, 1241, 1340, 2570
BmsI GCATC 4 cut(s) 201, 273, 497, 1743
BmtI GCTAGC 1 cut(s) 1746
BpiI GAAGAC 2 cut(s) 89, 2160
BpmI CTGGAG 1 cut(s) 1361
BpuEI CTTGAG 3 cut(s) 584, 1343, 2543
BpuMI CCSGG 1 cut(s) 1112
BsaAI YACGTR 1 cut(s) 1608
BsaHI GRCGYC 1 cut(s) 1367
BsaI GGTCTC 3 cut(s) 504, 560, 2008
BsaJI CCNNGG 4 cut(s) 66, 570, 1833, 2568
BsaWI WCCGGW 2 cut(s) 1462, 1986
BsaXI ACNNNNNCTCC 4 cut(s) 200, 230, 1829, 1859
Bsc4I CCNNNNNNNGG 5 cut(s) 886, 1539, 1891, 1928, 2266
Bse118I RCCGGY 2 cut(s) 1617, 1986
Bse1I ACTGG 2 cut(s) 240, 972
Bse3DI GCAATG 1 cut(s) 2491
BseAI TCCGGA 1 cut(s) 1462
BseBI CCWGG 5 cut(s) 113, 379, 1241, 1340, 2570
BseDI CCNNGG 4 cut(s) 66, 570, 1833, 2568
BseGI GGATG 1 cut(s) 1720
BseLI CCNNNNNNNGG 5 cut(s) 886, 1539, 1891, 1928, 2266
BseMI GCAATG 1 cut(s) 2491
BseMII CTCAG 4 cut(s) 386, 1268, 1294, 2546
BseNI ACTGG 2 cut(s) 240, 972
BseRI GAGGAG 3 cut(s) 1428, 1850, 2042
BseSI GKGCMC 1 cut(s) 2215
BseXI GCAGC 5 cut(s) 113, 1009, 1608, 2278, 2529
BseYI CCCAGC 1 cut(s) 1286
BsgI GTGCAG 1 cut(s) 1000
Bsh1236I CGCG 1 cut(s) 270
Bsh1285I CGRYCG 1 cut(s) 1987
BshFI GGCC 1 cut(s) 2311
BshNI GGYRCC 3 cut(s) 1366, 1840, 2621
BshTI ACCGGT 1 cut(s) 1986
BsiEI CGRYCG 1 cut(s) 1987
BsiHKAI GWGCWC 2 cut(s) 1281, 2374
BsiHKCI CYCGRG 1 cut(s) 1832
BsiSI CCGG 4 cut(s) 1112, 1463, 1618, 1987
BslFI GGGAC 2 cut(s) 1094, 1867
BslI CCNNNNNNNGG 5 cut(s) 886, 1539, 1891, 1928, 2266
BsmAI GTCTC 8 cut(s) 35, 159, 504, 560, 885, 1126, 2008, 2088
BsmBI CGTCTC 2 cut(s) 1126, 2088
BsmFI GGGAC 2 cut(s) 1094, 1867
BsmI GAATGC 2 cut(s) 247, 394
BsnI GGCC 1 cut(s) 2311
Bso31I GGTCTC 3 cut(s) 504, 560, 2008
BsoBI CYCGRG 1 cut(s) 1832
Bsp1286I GDGCHC 4 cut(s) 933, 1281, 2215, 2374
Bsp13I TCCGGA 1 cut(s) 1462
Bsp143I GATC 8 cut(s) 372, 1456, 1465, 1601, 1828, 2041, 2452, 2580
BspACI CCGC 9 cut(s) 162, 206, 270, 286, 338, 1331, 1702, 1781, 1889
BspANI GGCC 1 cut(s) 2311
BspCNI CTCAG 4 cut(s) 387, 1267, 1293, 2545
BspEI TCCGGA 1 cut(s) 1462
BspFNI CGCG 1 cut(s) 270
BspHI TCATGA 1 cut(s) 316
BspLI GGNNCC 6 cut(s) 336, 930, 1368, 1842, 1883, 2623
BspMAI CTGCAG 2 cut(s) 797, 1626
BspOI GCTAGC 1 cut(s) 1746
BspPI GGATC 3 cut(s) 1473, 1596, 1823
BspT107I GGYRCC 3 cut(s) 1366, 1840, 2621
BspTI CTTAAG 3 cut(s) 641, 1129, 1811
BspTNI GGTCTC 3 cut(s) 504, 560, 2008
BsrBI CCGCTC 2 cut(s) 164, 1702
BsrDI GCAATG 1 cut(s) 2491
BsrFI RCCGGY 2 cut(s) 1617, 1986
BsrI ACTGG 2 cut(s) 240, 972
BssAI RCCGGY 2 cut(s) 1617, 1986
BssECI CCNNGG 4 cut(s) 66, 570, 1833, 2568
BssMI GATC 8 cut(s) 372, 1456, 1465, 1601, 1828, 2041, 2452, 2580
BssNI GRCGYC 1 cut(s) 1367
BssT1I CCWWGG 2 cut(s) 66, 570
Bst2UI CCWGG 5 cut(s) 113, 379, 1241, 1340, 2570
Bst4CI ACNGT 8 cut(s) 526, 817, 1501, 1680, 1729, 1845, 2195, 2629
Bst6I CTCTTC 1 cut(s) 1914
BstACI GRCGYC 1 cut(s) 1367
BstAFI CTTAAG 3 cut(s) 641, 1129, 1811
BstAPI GCANNNNNTGC 1 cut(s) 2358
BstBAI YACGTR 1 cut(s) 1608
BstC8I GCNNGC 6 cut(s) 118, 635, 1047, 1329, 1744, 1748
BstF5I GGATG 1 cut(s) 1720
BstFNI CGCG 1 cut(s) 270
BstH2I RGCGCY 1 cut(s) 1370
BstHHI GCGC 2 cut(s) 1369, 2531
BstKTI GATC 8 cut(s) 375, 1459, 1468, 1604, 1831, 2044, 2455, 2583
BstMAI GTCTC 8 cut(s) 35, 159, 504, 560, 885, 1126, 2008, 2088
BstMBI GATC 8 cut(s) 372, 1456, 1465, 1601, 1828, 2041, 2452, 2580
BstMCI CGRYCG 1 cut(s) 1987
BstMWI GCNNNNNNNGC 3 cut(s) 126, 2358, 2621
BstNI CCWGG 5 cut(s) 113, 379, 1241, 1340, 2570
BstNSI RCATGY 3 cut(s) 144, 1165, 1331
BstSCI CCNGG 6 cut(s) 111, 377, 1110, 1239, 1338, 2568
BstSFI CTRYAG 2 cut(s) 793, 1622
BstSLI GKGCMC 1 cut(s) 2215
BstUI CGCG 1 cut(s) 270
BstV1I GCAGC 5 cut(s) 113, 1009, 1608, 2278, 2529
BstV2I GAAGAC 2 cut(s) 89, 2160
BstX2I RGATCY 1 cut(s) 1601
BstYI RGATCY 1 cut(s) 1601
BsuRI GGCC 1 cut(s) 2311
BtgZI GCGATG 1 cut(s) 597
BtrI CACGTC 1 cut(s) 95
BtsCI GGATG 1 cut(s) 1720
BtsI GCAGTG 1 cut(s) 988
BtsIMutI CAGTG 5 cut(s) 392, 813, 988, 1288, 2074
Cac8I GCNNGC 6 cut(s) 118, 635, 1047, 1329, 1744, 1748
CciI TCATGA 1 cut(s) 316
CfoI GCGC 2 cut(s) 1369, 2531
Cfr10I RCCGGY 2 cut(s) 1617, 1986
Cfr13I GGNCC 2 cut(s) 1507, 1881
CseI GACGC 3 cut(s) 463, 641, 1846
Csp6I GTAC 3 cut(s) 1152, 1319, 1648
CspAI ACCGGT 1 cut(s) 1986
CviAII CATG 9 cut(s) 141, 317, 342, 624, 1162, 1328, 1363, 1767, 2007
CviQI GTAC 3 cut(s) 1152, 1319, 1648
DinI GGCGCC 1 cut(s) 1368
DpnI GATC 8 cut(s) 374, 1458, 1467, 1603, 1830, 2043, 2454, 2582
DpnII GATC 8 cut(s) 372, 1456, 1465, 1601, 1828, 2041, 2452, 2580
Eam1104I CTCTTC 1 cut(s) 1914
EarI CTCTTC 1 cut(s) 1914
Ecl136II GAGCTC 2 cut(s) 1279, 2372
Eco130I CCWWGG 2 cut(s) 66, 570
Eco147I AGGCCT 1 cut(s) 2311
Eco24I GRGCYC 3 cut(s) 933, 1281, 2374
Eco31I GGTCTC 3 cut(s) 504, 560, 2008
Eco32I GATATC 1 cut(s) 621
Eco47I GGWCC 2 cut(s) 1507, 1881
Eco53kI GAGCTC 2 cut(s) 1279, 2372
Eco57I CTGAAG 1 cut(s) 2480
Eco72I CACGTG 1 cut(s) 1608
Eco88I CYCGRG 1 cut(s) 1832
EcoICRI GAGCTC 2 cut(s) 1279, 2372
EcoO109I RGGNCCY 1 cut(s) 1881
EcoRII CCWGG 5 cut(s) 111, 377, 1239, 1338, 2568
EcoRV GATATC 1 cut(s) 621
EcoT14I CCWWGG 2 cut(s) 66, 570
EcoT22I ATGCAT 1 cut(s) 247
EcoT38I GRGCYC 3 cut(s) 933, 1281, 2374
EgeI GGCGCC 1 cut(s) 1368
EheI GGCGCC 1 cut(s) 1368
ErhI CCWWGG 2 cut(s) 66, 570
Esp3I CGTCTC 2 cut(s) 1126, 2088
FaeI CATG 9 cut(s) 144, 320, 345, 627, 1165, 1331, 1366, 1770, 2010
FalI AAGNNNNNCTT 2 cut(s) 685, 717
FaqI GGGAC 2 cut(s) 1094, 1867
FatI CATG 9 cut(s) 140, 316, 341, 623, 1161, 1327, 1362, 1766, 2006
FauI CCCGC 1 cut(s) 263
FbaI TGATCA 3 cut(s) 372, 2041, 2452
Fnu4HI GCNGC 6 cut(s) 127, 1023, 1622, 1703, 2292, 2543
FokI GGATG 1 cut(s) 1727
FriOI GRGCYC 3 cut(s) 933, 1281, 2374
Fsp4HI GCNGC 6 cut(s) 127, 1023, 1622, 1703, 2292, 2543
FspBI CTAG 8 cut(s) 27, 503, 807, 1106, 1743, 1854, 1886, 2187
GlaI GCGC 2 cut(s) 1368, 2530
GluI GCNGC 6 cut(s) 127, 1023, 1622, 1703, 2292, 2543
GsaI CCCAGC 1 cut(s) 1290
GsuI CTGGAG 1 cut(s) 1361
HaeII RGCGCY 1 cut(s) 1370
HaeIII GGCC 1 cut(s) 2311
HapII CCGG 4 cut(s) 1112, 1463, 1618, 1987
HgaI GACGC 3 cut(s) 463, 641, 1846
HhaI GCGC 2 cut(s) 1369, 2531
Hin1I GRCGYC 1 cut(s) 1367
Hin1II CATG 9 cut(s) 144, 320, 345, 627, 1165, 1331, 1366, 1770, 2010
Hin6I GCGC 2 cut(s) 1367, 2529
HinP1I GCGC 2 cut(s) 1367, 2529
HindIII AAGCTT 4 cut(s) 413, 694, 770, 912
HpaII CCGG 4 cut(s) 1112, 1463, 1618, 1987
Hpy166II GTNNAC 1 cut(s) 1152
Hpy188I TCNGA 7 cut(s) 102, 368, 387, 2088, 2279, 2535, 2578
Hpy188III TCNNGA 8 cut(s) 317, 563, 1262, 1463, 1832, 2039, 2522, 2639
Hpy8I GTNNAC 1 cut(s) 1152
Hpy99I CGWCG 1 cut(s) 1594
HpyAV CCTTC 2 cut(s) 1403, 2455
HpyCH4III ACNGT 8 cut(s) 526, 817, 1501, 1680, 1729, 1845, 2195, 2629
HpyCH4IV ACGT 7 cut(s) 94, 548, 1039, 1202, 1266, 1607, 1634
HpyF10VI GCNNNNNNNGC 3 cut(s) 126, 2358, 2621
HpySE526I ACGT 7 cut(s) 94, 548, 1039, 1202, 1266, 1607, 1634
Hsp92I GRCGYC 1 cut(s) 1367
Hsp92II CATG 9 cut(s) 144, 320, 345, 627, 1165, 1331, 1366, 1770, 2010
HspAI GCGC 2 cut(s) 1367, 2529
KasI GGCGCC 1 cut(s) 1366
Kpn2I TCCGGA 1 cut(s) 1462
Ksp22I TGATCA 3 cut(s) 372, 2041, 2452
Kzo9I GATC 8 cut(s) 372, 1456, 1465, 1601, 1828, 2041, 2452, 2580
LmnI GCTCC 5 cut(s) 169, 642, 838, 928, 1699
Lsp1109I GCAGC 5 cut(s) 113, 1009, 1608, 2278, 2529
LweI GCATC 4 cut(s) 201, 273, 497, 1743
MaeI CTAG 8 cut(s) 27, 503, 807, 1106, 1743, 1854, 1886, 2187
MaeII ACGT 7 cut(s) 94, 548, 1039, 1202, 1266, 1607, 1634
MaeIII GTNAC 5 cut(s) 427, 1267, 1613, 2031, 2584
MalI GATC 8 cut(s) 374, 1458, 1467, 1603, 1830, 2043, 2454, 2582
MbiI CCGCTC 2 cut(s) 164, 1702
MboI GATC 8 cut(s) 372, 1456, 1465, 1601, 1828, 2041, 2452, 2580
MboII GAAGA 7 cut(s) 53, 89, 788, 1240, 1451, 1901, 2165
MfeI CAATTG 2 cut(s) 1693, 2499
MflI RGATCY 1 cut(s) 1601
MhlI GDGCHC 4 cut(s) 933, 1281, 2215, 2374
Mly113I GGCGCC 1 cut(s) 1367
MlyI GAGTC 3 cut(s) 1752, 1813, 2483
MmeI TCCRAC 3 cut(s) 837, 1935, 2216
Mph1103I ATGCAT 1 cut(s) 247
MroI TCCGGA 1 cut(s) 1462
MslI CAYNNNNRTG 3 cut(s) 397, 628, 2162
MspA1I CMGCKG 1 cut(s) 2458
MspCI CTTAAG 3 cut(s) 641, 1129, 1811
MspI CCGG 4 cut(s) 1112, 1463, 1618, 1987
MspR9I CCNGG 6 cut(s) 113, 379, 1112, 1241, 1340, 2570
MunI CAATTG 2 cut(s) 1693, 2499
Mva1269I GAATGC 2 cut(s) 247, 394
MvaI CCWGG 5 cut(s) 113, 379, 1241, 1340, 2570
MvnI CGCG 1 cut(s) 270
MwoI GCNNNNNNNGC 3 cut(s) 126, 2358, 2621
NarI GGCGCC 1 cut(s) 1367
NciI CCSGG 1 cut(s) 1112
NdeII GATC 8 cut(s) 372, 1456, 1465, 1601, 1828, 2041, 2452, 2580
NheI GCTAGC 1 cut(s) 1742
NlaIII CATG 9 cut(s) 144, 320, 345, 627, 1165, 1331, 1366, 1770, 2010
NlaIV GGNNCC 6 cut(s) 336, 930, 1368, 1842, 1883, 2623
NmuCI GTSAC 1 cut(s) 427
NsiI ATGCAT 1 cut(s) 247
NspI RCATGY 3 cut(s) 144, 1165, 1331
OliI CACNNNNGTG 1 cut(s) 397
PaeI GCATGC 1 cut(s) 1331
PagI TCATGA 1 cut(s) 316
PceI AGGCCT 1 cut(s) 2311
PciI ACATGT 1 cut(s) 1161
PctI GAATGC 2 cut(s) 247, 394
PfeI GAWTC 7 cut(s) 85, 382, 883, 1585, 2180, 2254, 2573
PflFI GACNNNGTC 1 cut(s) 326
PflMI CCANNNNNTGG 1 cut(s) 1539
PinAI ACCGGT 1 cut(s) 1986
PkrI GCNGC 6 cut(s) 128, 1024, 1623, 1704, 2293, 2544
PleI GAGTC 3 cut(s) 1752, 1813, 2483
PluTI GGCGCC 1 cut(s) 1370
PmaCI CACGTG 1 cut(s) 1608
PmlI CACGTG 1 cut(s) 1608
PpsI GAGTC 3 cut(s) 1752, 1813, 2483
Ppu21I YACGTR 1 cut(s) 1608
PpuMI RGGWCCY 1 cut(s) 1881
PscI ACATGT 1 cut(s) 1161
PshBI ATTAAT 1 cut(s) 1773
PsiI TTATAA 1 cut(s) 1170
Psp124BI GAGCTC 2 cut(s) 1281, 2374
Psp5II RGGWCCY 1 cut(s) 1881
Psp6I CCWGG 5 cut(s) 111, 377, 1239, 1338, 2568
PspCI CACGTG 1 cut(s) 1608
PspFI CCCAGC 1 cut(s) 1286
PspGI CCWGG 5 cut(s) 111, 377, 1239, 1338, 2568
PspN4I GGNNCC 6 cut(s) 336, 930, 1368, 1842, 1883, 2623
PspPI GGNCC 2 cut(s) 1507, 1881
PspPPI RGGWCCY 1 cut(s) 1881
PsrI GAACNNNNNNTAC 2 cut(s) 948, 980
PstI CTGCAG 2 cut(s) 797, 1626
PsuI RGATCY 1 cut(s) 1601
PsyI GACNNNGTC 1 cut(s) 326
PvuII CAGCTG 1 cut(s) 2458
RsaI GTAC 3 cut(s) 1153, 1320, 1649
RsaNI GTAC 3 cut(s) 1152, 1319, 1648
RseI CAYNNNNRTG 3 cut(s) 397, 628, 2162
SacI GAGCTC 2 cut(s) 1281, 2374
SatI GCNGC 6 cut(s) 127, 1023, 1622, 1703, 2292, 2543
Sau3AI GATC 8 cut(s) 372, 1456, 1465, 1601, 1828, 2041, 2452, 2580
Sau96I GGNCC 2 cut(s) 1507, 1881
SchI GAGTC 3 cut(s) 1752, 1813, 2483
ScrFI CCNGG 6 cut(s) 113, 379, 1112, 1241, 1340, 2570
SduI GDGCHC 4 cut(s) 933, 1281, 2215, 2374
SfaNI GCATC 4 cut(s) 201, 273, 497, 1743
SfcI CTRYAG 2 cut(s) 793, 1622
SfoI GGCGCC 1 cut(s) 1368
SinI GGWCC 2 cut(s) 1507, 1881
SmiMI CAYNNNNRTG 3 cut(s) 397, 628, 2162
SmlI CTYRAG 6 cut(s) 563, 641, 1129, 1322, 1811, 2522
SmoI CTYRAG 6 cut(s) 563, 641, 1129, 1322, 1811, 2522
SphI GCATGC 1 cut(s) 1331
SseBI AGGCCT 1 cut(s) 2311
SsiI CCGC 9 cut(s) 162, 206, 270, 286, 338, 1331, 1702, 1781, 1889
SspDI GGCGCC 1 cut(s) 1366
SspI AATATT 3 cut(s) 1084, 2094, 2206
SspMI CTAG 8 cut(s) 27, 503, 807, 1106, 1743, 1854, 1886, 2187
SstI GAGCTC 2 cut(s) 1281, 2374
StuI AGGCCT 1 cut(s) 2311
StyD4I CCNGG 6 cut(s) 111, 377, 1110, 1239, 1338, 2568
StyI CCWWGG 2 cut(s) 66, 570
TaaI ACNGT 8 cut(s) 526, 817, 1501, 1680, 1729, 1845, 2195, 2629
TaiI ACGT 7 cut(s) 97, 551, 1042, 1205, 1269, 1610, 1637
TaqI TCGA 5 cut(s) 330, 729, 948, 1516, 1756
TatI WGTACW 1 cut(s) 1318
TauI GCSGC 1 cut(s) 1705
TfiI GAWTC 7 cut(s) 85, 382, 883, 1585, 2180, 2254, 2573
TscAI CASTG 5 cut(s) 399, 820, 988, 1288, 2074
TseFI GTSAC 1 cut(s) 427
TseI GCWGC 5 cut(s) 126, 1022, 1621, 2291, 2542
Tsp45I GTSAC 1 cut(s) 427
TspGWI ACGGA 4 cut(s) 156, 456, 1578, 1839
TspRI CASTG 5 cut(s) 399, 820, 988, 1288, 2074
Tth111I GACNNNGTC 1 cut(s) 326
Van91I CCANNNNNTGG 1 cut(s) 1539
Vha464I CTTAAG 3 cut(s) 641, 1129, 1811
VpaK11BI GGWCC 2 cut(s) 1507, 1881
VspI ATTAAT 1 cut(s) 1773
XapI RAATTY 6 cut(s) 290, 710, 1144, 1573, 1900, 2536
XceI RCATGY 3 cut(s) 144, 1165, 1331
XspI CTAG 8 cut(s) 27, 503, 807, 1106, 1743, 1854, 1886, 2187
Zsp2I ATGCAT 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.