Rh3DG212400

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000241
Physical Location & Seq
Forward (+)
19647031 .. 19647917
887 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG212400.1

Sequence Viewer

Length: 804 bp
ATGGAACACAAGGGTAAGTTATTGGCTAGTGGAAATGGTGAGACTGACAGGTTTAGCAATCTTCCCAAGGAAGTCCTTGATAAGATTCTTTCACGTCTTCTGATTAACGACCTGGCTCGCTTCTGCTGCGTGTCCAAAACATGCAAAGATATGTCTCTGTCGGCTCCGTATGTGAGCATTTGTGGATTTGGTGTAGATGAAATAGCGGAGATGCCGTGTGAAGTTCGGTTGAAACTGGTGAATGCATTGGATAGGTTCTTGCTTAGTCGTGGGGATAATGAGATGCGGAAATTTACTCTTGTTTGGGAGGGTCATCATGAGGACGAGGTCGAGGAACCGCCATGCTTCTGTGTTAATGAGAGTTTCCGAATGATCACCTGGATTCAGAATGCACTGAGGTGTAATGTTGAAAAGCTTTTTATTGACATGACCTTTTATGATCGTGATGGGGAACTTTTAGCATTTCCGTCTTGTGTCTTTAATTGTGCATCTTTGAGGTCTCTAGTGGTAGAAATGTCATTTACGGTTGTTAAAACACCCTCATTTACATTCTCATCTAATCTTGAGACCTTGGCATTGAGCGATGTTGATATTGCAGATGAGGGGTTTTTCAAGTGGATATCATGTTCGTGCAAGCTCCTTAAGGAATTGCGTCTTGCAGGACTTAATGGGATAGATAATATCACCATTGAAAGCTTGTCTTTGGAAAAATTTAGTTATATTCATTTCGAGGTGTATGAAACCTGTCGTATTAACATTTCTGGCTGCTTACAGGGAGGAAGGCATGCAAGCTCAATTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

267

Amino Acids

30.24

Weight (kDa)

5.18

Isoelectric Point (pI)

35.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 18 - 53 2.8e-07 F-box domain
LRR_At1g61320_AtMIF1 PF23622 122 - 243 6.7e-06 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 126 - 245 4.7e-09 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 206, 286, 338
AcsI RAATTY 2 cut(s) 290, 710
AflII CTTAAG 1 cut(s) 641
AgsI TTSAA 4 cut(s) 232, 410, 613, 692
AjiI CACGTC 1 cut(s) 95
AjnI CCWGG 2 cut(s) 111, 377
AleI CACNNNNGTG 1 cut(s) 397
AloI GAACNNNNNNTCC 2 cut(s) 610, 642
AluBI AGCT 4 cut(s) 415, 637, 696, 792
AluI AGCT 4 cut(s) 415, 637, 696, 792
Alw26I GTCTC 4 cut(s) 35, 159, 504, 560
ApeKI GCWGC 2 cut(s) 126, 765
ApoI RAATTY 2 cut(s) 290, 710
AsuHPI GGTGA 4 cut(s) 50, 250, 367, 676
BbsI GAAGAC 1 cut(s) 89
BbvI GCAGC 2 cut(s) 113, 752
BccI CCATC 1 cut(s) 440
BceAI ACGGC 1 cut(s) 199
BciT130I CCWGG 2 cut(s) 113, 379
BclI TGATCA 1 cut(s) 372
BcoDI GTCTC 4 cut(s) 35, 159, 504, 560
BfaI CTAG 2 cut(s) 27, 503
BfrI CTTAAG 1 cut(s) 641
BisI GCNGC 2 cut(s) 127, 766
BlsI GCNGC 2 cut(s) 128, 767
Bme1390I CCNGG 2 cut(s) 113, 379
BmgBI CACGTC 1 cut(s) 95
BmiI GGNNCC 2 cut(s) 165, 336
BmrFI CCNGG 2 cut(s) 113, 379
BmsI GCATC 3 cut(s) 201, 273, 497
BpiI GAAGAC 1 cut(s) 89
BpuEI CTTGAG 1 cut(s) 584
BsaI GGTCTC 2 cut(s) 504, 560
BsaJI CCNNGG 2 cut(s) 66, 570
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bse1I ACTGG 1 cut(s) 240
BseBI CCWGG 2 cut(s) 113, 379
BseDI CCNNGG 2 cut(s) 66, 570
BseMII CTCAG 1 cut(s) 386
BseNI ACTGG 1 cut(s) 240
BseXI GCAGC 2 cut(s) 113, 752
BsmAI GTCTC 4 cut(s) 35, 159, 504, 560
BsmI GAATGC 2 cut(s) 247, 394
Bso31I GGTCTC 2 cut(s) 504, 560
Bsp143I GATC 2 cut(s) 372, 439
BspACI CCGC 3 cut(s) 206, 286, 338
BspCNI CTCAG 1 cut(s) 387
BspHI TCATGA 1 cut(s) 316
BspLI GGNNCC 2 cut(s) 165, 336
BspTI CTTAAG 1 cut(s) 641
BspTNI GGTCTC 2 cut(s) 504, 560
BsrI ACTGG 1 cut(s) 240
BssECI CCNNGG 2 cut(s) 66, 570
BssMI GATC 2 cut(s) 372, 439
BssT1I CCWWGG 2 cut(s) 66, 570
Bst2UI CCWGG 2 cut(s) 113, 379
Bst4CI ACNGT 1 cut(s) 526
BstAFI CTTAAG 1 cut(s) 641
BstC8I GCNNGC 4 cut(s) 118, 635, 786, 790
BstDEI CTNAG 2 cut(s) 263, 395
BstKTI GATC 2 cut(s) 375, 442
BstMAI GTCTC 4 cut(s) 35, 159, 504, 560
BstMBI GATC 2 cut(s) 372, 439
BstMWI GCNNNNNNNGC 1 cut(s) 126
BstNI CCWGG 2 cut(s) 113, 379
BstNSI RCATGY 2 cut(s) 144, 788
BstSCI CCNGG 2 cut(s) 111, 377
BstV1I GCAGC 2 cut(s) 113, 752
BstV2I GAAGAC 1 cut(s) 89
BtgZI GCGATG 1 cut(s) 597
BtrI CACGTC 1 cut(s) 95
BtsIMutI CAGTG 1 cut(s) 392
Cac8I GCNNGC 4 cut(s) 118, 635, 786, 790
CciI TCATGA 1 cut(s) 316
CseI GACGC 1 cut(s) 641
CviAII CATG 6 cut(s) 141, 317, 342, 427, 624, 785
CviJI RGCY 8 cut(s) 26, 116, 164, 415, 637, 696, 765, 792
CviKI_1 RGCY 8 cut(s) 26, 116, 164, 415, 637, 696, 765, 792
DdeI CTNAG 2 cut(s) 263, 395
DpnI GATC 2 cut(s) 374, 441
DpnII GATC 2 cut(s) 372, 439
Eco130I CCWWGG 2 cut(s) 66, 570
Eco31I GGTCTC 2 cut(s) 504, 560
Eco32I GATATC 1 cut(s) 621
EcoRII CCWGG 2 cut(s) 111, 377
EcoRV GATATC 1 cut(s) 621
EcoT14I CCWWGG 2 cut(s) 66, 570
EcoT22I ATGCAT 1 cut(s) 247
ErhI CCWWGG 2 cut(s) 66, 570
FaeI CATG 6 cut(s) 144, 320, 345, 430, 627, 788
FalI AAGNNNNNCTT 2 cut(s) 685, 717
FatI CATG 6 cut(s) 140, 316, 341, 426, 623, 784
FbaI TGATCA 1 cut(s) 372
Fnu4HI GCNGC 2 cut(s) 127, 766
Fsp4HI GCNGC 2 cut(s) 127, 766
FspBI CTAG 2 cut(s) 27, 503
GluI GCNGC 2 cut(s) 127, 766
HgaI GACGC 1 cut(s) 641
Hin1II CATG 6 cut(s) 144, 320, 345, 430, 627, 788
HindIII AAGCTT 2 cut(s) 413, 694
HinfI GANTC 2 cut(s) 85, 382
HphI GGTGA 4 cut(s) 50, 250, 367, 676
Hpy188I TCNGA 3 cut(s) 102, 368, 387
Hpy188III TCNNGA 3 cut(s) 317, 443, 563
HpyAV CCTTC 1 cut(s) 774
HpyCH4III ACNGT 1 cut(s) 526
HpyCH4IV ACGT 1 cut(s) 94
HpyCH4V TGCA 8 cut(s) 144, 245, 392, 488, 596, 633, 659, 788
HpyF10VI GCNNNNNNNGC 1 cut(s) 126
HpyF3I CTNAG 2 cut(s) 263, 395
HpySE526I ACGT 1 cut(s) 94
Hsp92II CATG 6 cut(s) 144, 320, 345, 430, 627, 788
Ksp22I TGATCA 1 cut(s) 372
Kzo9I GATC 2 cut(s) 372, 439
LmnI GCTCC 2 cut(s) 169, 642
Lsp1109I GCAGC 2 cut(s) 113, 752
LweI GCATC 3 cut(s) 201, 273, 497
MaeI CTAG 2 cut(s) 27, 503
MaeII ACGT 1 cut(s) 94
MalI GATC 2 cut(s) 374, 441
MboI GATC 2 cut(s) 372, 439
MboII GAAGA 2 cut(s) 53, 89
MluCI AATT 5 cut(s) 290, 481, 647, 710, 795
Mph1103I ATGCAT 1 cut(s) 247
MseI TTAA 7 cut(s) 105, 354, 480, 531, 642, 666, 753
MslI CAYNNNNRTG 2 cut(s) 397, 628
MspCI CTTAAG 1 cut(s) 641
MspR9I CCNGG 2 cut(s) 113, 379
Mva1269I GAATGC 2 cut(s) 247, 394
MvaI CCWGG 2 cut(s) 113, 379
MwoI GCNNNNNNNGC 1 cut(s) 126
NdeII GATC 2 cut(s) 372, 439
NlaIII CATG 6 cut(s) 144, 320, 345, 430, 627, 788
NlaIV GGNNCC 2 cut(s) 165, 336
NsiI ATGCAT 1 cut(s) 247
NspI RCATGY 2 cut(s) 144, 788
OliI CACNNNNGTG 1 cut(s) 397
PaeI GCATGC 1 cut(s) 788
PagI TCATGA 1 cut(s) 316
PctI GAATGC 2 cut(s) 247, 394
PfeI GAWTC 2 cut(s) 85, 382
PflFI GACNNNGTC 1 cut(s) 326
PkrI GCNGC 2 cut(s) 128, 767
Psp6I CCWGG 2 cut(s) 111, 377
PspGI CCWGG 2 cut(s) 111, 377
PspN4I GGNNCC 2 cut(s) 165, 336
PsyI GACNNNGTC 1 cut(s) 326
RseI CAYNNNNRTG 2 cut(s) 397, 628
SaqAI TTAA 7 cut(s) 105, 354, 480, 531, 642, 666, 753
SatI GCNGC 2 cut(s) 127, 766
Sau3AI GATC 2 cut(s) 372, 439
ScrFI CCNGG 2 cut(s) 113, 379
SfaNI GCATC 3 cut(s) 201, 273, 497
SmiMI CAYNNNNRTG 2 cut(s) 397, 628
SmlI CTYRAG 2 cut(s) 563, 641
SmoI CTYRAG 2 cut(s) 563, 641
SphI GCATGC 1 cut(s) 788
Sse9I AATT 5 cut(s) 290, 481, 647, 710, 795
SsiI CCGC 3 cut(s) 206, 286, 338
SspMI CTAG 2 cut(s) 27, 503
StyD4I CCNGG 2 cut(s) 111, 377
StyI CCWWGG 2 cut(s) 66, 570
TaaI ACNGT 1 cut(s) 526
TaiI ACGT 1 cut(s) 97
TaqI TCGA 2 cut(s) 330, 729
TasI AATT 5 cut(s) 290, 481, 647, 710, 795
TfiI GAWTC 2 cut(s) 85, 382
Tru1I TTAA 7 cut(s) 105, 354, 480, 531, 642, 666, 753
Tru9I TTAA 7 cut(s) 105, 354, 480, 531, 642, 666, 753
TscAI CASTG 1 cut(s) 399
TseI GCWGC 2 cut(s) 126, 765
TspDTI ATGAA 3 cut(s) 213, 713, 753
TspGWI ACGGA 2 cut(s) 156, 456
TspRI CASTG 1 cut(s) 399
Tth111I GACNNNGTC 1 cut(s) 326
Vha464I CTTAAG 1 cut(s) 641
XapI RAATTY 2 cut(s) 290, 710
XceI RCATGY 2 cut(s) 144, 788
XspI CTAG 2 cut(s) 27, 503
Zsp2I ATGCAT 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.