MD12G1026500.v1.1

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0000241
Physical Location & Seq
Forward (+)
2975281 .. 2975776
496 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1026500.v1.1.491

Sequence Viewer

Length: 369 bp
ATGGATATTCGGAGCTTTTCTGATGAGCTCGTTCCTGCATTGGTCTCTCTTTTAAGAGGAATGCCCAATTTGTGTACTTTATACGTAGGTTATCACTCAAGTCGTGACACCAAATCTGATGCATCTAGGTTTGATGTGGAACACTGGAAGCTCCAACATCTGGAATTTATTCATCAAACTGAGGAGGTTACCATAGCGCTTTCCAGTGGGTCGAATGGGATTGAGTTCGAAAGGTACATACTCGAGAATGCCGAGAAGCTGGAGCAAATGACAATAATTCATTTACCCGAGCAATCTGATGCTATACAGAAGCTAAATGAAAGTAAGATGATGTCCAAGGCCACAGTGATCTTCAAGGAAGACAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

123

Amino Acids

13.99

Weight (kDa)

5.02

Isoelectric Point (pI)

56.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 160
AcsI RAATTY 1 cut(s) 164
AfaI GTAC 2 cut(s) 76, 236
AfeI AGCGCT 1 cut(s) 198
AfiI CCNNNNNNNGG 1 cut(s) 160
AgsI TTSAA 1 cut(s) 355
AluBI AGCT 6 cut(s) 15, 28, 151, 259, 313, 366
AluI AGCT 6 cut(s) 15, 28, 151, 259, 313, 366
Alw21I GWGCWC 1 cut(s) 30
Alw26I GTCTC 1 cut(s) 49
Ama87I CYCGRG 2 cut(s) 242, 287
Aor51HI AGCGCT 1 cut(s) 198
AoxI GGCC 1 cut(s) 339
ApoI RAATTY 1 cut(s) 164
Asp700I GAANNNNTTC 1 cut(s) 168
AspLEI GCGC 1 cut(s) 199
AsuII TTCGAA 1 cut(s) 228
AvaI CYCGRG 2 cut(s) 242, 287
BanII GRGCYC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 30
BcoDI GTCTC 1 cut(s) 49
BfaI CTAG 2 cut(s) 126, 367
BfoI RGCGCY 1 cut(s) 200
BmeT110I CYCGRG 2 cut(s) 242, 287
BmsI GCATC 3 cut(s) 109, 131, 289
BpmI CTGGAG 1 cut(s) 281
Bpu14I TTCGAA 1 cut(s) 228
BpuEI CTTGAG 1 cut(s) 82
BsaAI YACGTR 1 cut(s) 85
BsaI GGTCTC 1 cut(s) 49
BsaJI CCNNGG 1 cut(s) 336
Bsc4I CCNNNNNNNGG 1 cut(s) 160
Bse1I ACTGG 2 cut(s) 149, 204
BseDI CCNNGG 1 cut(s) 336
BseLI CCNNNNNNNGG 1 cut(s) 160
BseMII CTCAG 1 cut(s) 171
BseNI ACTGG 2 cut(s) 149, 204
BseRI GAGGAG 1 cut(s) 197
BshFI GGCC 1 cut(s) 341
BsiHKAI GWGCWC 1 cut(s) 30
BsiHKCI CYCGRG 2 cut(s) 242, 287
BslI CCNNNNNNNGG 1 cut(s) 160
BsmAI GTCTC 1 cut(s) 49
BsmI GAATGC 2 cut(s) 66, 253
BsnI GGCC 1 cut(s) 341
Bso31I GGTCTC 1 cut(s) 49
BsoBI CYCGRG 2 cut(s) 242, 287
Bsp119I TTCGAA 1 cut(s) 228
Bsp1286I GDGCHC 1 cut(s) 30
Bsp143I GATC 1 cut(s) 348
BspANI GGCC 1 cut(s) 341
BspCNI CTCAG 1 cut(s) 172
BspT104I TTCGAA 1 cut(s) 228
BspTNI GGTCTC 1 cut(s) 49
BsrI ACTGG 2 cut(s) 149, 204
BssECI CCNNGG 1 cut(s) 336
BssMI GATC 1 cut(s) 348
BssT1I CCWWGG 1 cut(s) 336
Bst4CI ACNGT 1 cut(s) 346
BstBAI YACGTR 1 cut(s) 85
BstBI TTCGAA 1 cut(s) 228
BstDEI CTNAG 1 cut(s) 180
BstEII GGTNACC 1 cut(s) 187
BstH2I RGCGCY 1 cut(s) 200
BstHHI GCGC 1 cut(s) 199
BstKTI GATC 1 cut(s) 351
BstMAI GTCTC 1 cut(s) 49
BstMBI GATC 1 cut(s) 348
BstPI GGTNACC 1 cut(s) 187
BstSNI TACGTA 1 cut(s) 85
BsuRI GGCC 1 cut(s) 341
BtsIMutI CAGTG 3 cut(s) 142, 211, 351
CfoI GCGC 1 cut(s) 199
Csp6I GTAC 2 cut(s) 75, 235
CviJI RGCY 7 cut(s) 15, 28, 151, 259, 313, 341, 366
CviKI_1 RGCY 7 cut(s) 15, 28, 151, 259, 313, 341, 366
CviQI GTAC 2 cut(s) 75, 235
DdeI CTNAG 1 cut(s) 180
DpnI GATC 1 cut(s) 350
DpnII GATC 1 cut(s) 348
Ecl136II GAGCTC 1 cut(s) 28
Eco105I TACGTA 1 cut(s) 85
Eco130I CCWWGG 1 cut(s) 336
Eco24I GRGCYC 1 cut(s) 30
Eco31I GGTCTC 1 cut(s) 49
Eco47III AGCGCT 1 cut(s) 198
Eco53kI GAGCTC 1 cut(s) 28
Eco88I CYCGRG 2 cut(s) 242, 287
Eco91I GGTNACC 1 cut(s) 187
EcoICRI GAGCTC 1 cut(s) 28
EcoO65I GGTNACC 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 336
EcoT22I ATGCAT 1 cut(s) 124
EcoT38I GRGCYC 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 336
FaiI YATR 4 cut(s) 82, 194, 239, 305
FriOI GRGCYC 1 cut(s) 30
FspBI CTAG 2 cut(s) 126, 367
GlaI GCGC 1 cut(s) 198
GsuI CTGGAG 1 cut(s) 281
HaeII RGCGCY 1 cut(s) 200
HaeIII GGCC 1 cut(s) 341
HhaI GCGC 1 cut(s) 199
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
Hpy166II GTNNAC 1 cut(s) 75
Hpy188I TCNGA 4 cut(s) 12, 22, 118, 298
Hpy188III TCNNGA 3 cut(s) 104, 161, 244
Hpy8I GTNNAC 1 cut(s) 75
HpyCH4III ACNGT 1 cut(s) 346
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 2 cut(s) 38, 122
HpyF3I CTNAG 1 cut(s) 180
HpySE526I ACGT 1 cut(s) 84
HspAI GCGC 1 cut(s) 197
Kzo9I GATC 1 cut(s) 348
LmnI GCTCC 3 cut(s) 12, 156, 262
LpnPI CCDG 5 cut(s) 48, 130, 146, 217, 245
LweI GCATC 3 cut(s) 109, 131, 289
MaeI CTAG 2 cut(s) 126, 367
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 2 cut(s) 104, 187
MalI GATC 1 cut(s) 350
MboI GATC 1 cut(s) 348
MboII GAAGA 1 cut(s) 343
MhlI GDGCHC 1 cut(s) 30
MluCI AATT 3 cut(s) 67, 164, 276
MmeI TCCRAC 1 cut(s) 178
MnlI CCTC 3 cut(s) 50, 175, 178
Mph1103I ATGCAT 1 cut(s) 124
MroXI GAANNNNTTC 1 cut(s) 168
MseI TTAA 1 cut(s) 53
Mva1269I GAATGC 2 cut(s) 66, 253
NdeII GATC 1 cut(s) 348
NmeAIII GCCGAG 1 cut(s) 277
NmuCI GTSAC 1 cut(s) 104
NsiI ATGCAT 1 cut(s) 124
NspV TTCGAA 1 cut(s) 228
PaeR7I CTCGAG 1 cut(s) 242
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PctI GAATGC 2 cut(s) 66, 253
PdmI GAANNNNTTC 1 cut(s) 168
PflMI CCANNNNNTGG 1 cut(s) 160
Ppu21I YACGTR 1 cut(s) 85
Psp124BI GAGCTC 1 cut(s) 30
PspEI GGTNACC 1 cut(s) 187
RsaI GTAC 2 cut(s) 76, 236
RsaNI GTAC 2 cut(s) 75, 235
SacI GAGCTC 1 cut(s) 30
SaqAI TTAA 1 cut(s) 53
Sau3AI GATC 1 cut(s) 348
SduI GDGCHC 1 cut(s) 30
SfaNI GCATC 3 cut(s) 109, 131, 289
Sfr274I CTCGAG 1 cut(s) 242
SfuI TTCGAA 1 cut(s) 228
SlaI CTCGAG 1 cut(s) 242
SmlI CTYRAG 2 cut(s) 97, 242
SmoI CTYRAG 2 cut(s) 97, 242
SnaBI TACGTA 1 cut(s) 85
Sse9I AATT 3 cut(s) 67, 164, 276
SspMI CTAG 2 cut(s) 126, 367
SstI GAGCTC 1 cut(s) 30
StyI CCWWGG 1 cut(s) 336
TaaI ACNGT 1 cut(s) 346
TaiI ACGT 1 cut(s) 87
TaqI TCGA 3 cut(s) 212, 228, 243
TasI AATT 3 cut(s) 67, 164, 276
TatI WGTACW 1 cut(s) 74
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TscAI CASTG 3 cut(s) 149, 211, 351
TseFI GTSAC 1 cut(s) 104
Tsp45I GTSAC 1 cut(s) 104
TspDTI ATGAA 3 cut(s) 161, 269, 333
TspRI CASTG 3 cut(s) 149, 211, 351
Van91I CCANNNNNTGG 1 cut(s) 160
XapI RAATTY 1 cut(s) 164
XhoI CTCGAG 1 cut(s) 242
XmnI GAANNNNTTC 1 cut(s) 168
XspI CTAG 2 cut(s) 126, 367
Zsp2I ATGCAT 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.