pycom04g13160

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0000241
Physical Location & Seq
Forward (+)
16157743 .. 16159485
1743 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g13160.3

Sequence Viewer

Length: 687 bp
ATGGCCGGGCGCAAGCGTAAGCTCCGGGCATCTACAAGTTGTCAAGCTGAAGGAAATTCCTCTGAAAGTGGAATAGACAGATTTAGTGATCTTCCGGAGGAAGTTGCTCATCATATTCTTTCCTTCCTCAATTTCAAAGACTACACTCGAGTGGGTGCTCTGTCCAAAAGATGCAGGCAAATTCATCTATCAGCTCCGGAAATGGATTTTGGTGCAATTTCAGAAGTTATCATTATGAACGAGAAGACCATTAAGGCTCTCTACCAGGAAGGCTCCAAGCCAACACGAATATGGGATAAAATTCGGAACTTGAGTATACATTGTGAGAGTTTGAATAACAAGCTTGTTCCTGCAGTGGTCTCTCTTCTTAGGAGAATGCCTAATCTGAATGTTCTGTGCATAAAGACTAGCTGTGAGATGTTGGCTCCCGAAAAAGCAAGTCGCTTTGGTAATGAATACTGGAAACTACAAAACCTTGATTTCATTAACCAGCTTAAGGAGGTAAGCATAGAGAATTCCTATGGGTCTAATGAAATCGAGTTTGCAAGGTATATTCTTGACCATGCTCGAAATTTGACGACAATGGTTATTGTTCTTCGTGATCAAACTGCTCCATCAAAAATTGTTGGGATGGTGAGTAGGAGCAATAGGATTTCCAGTGCTGTAGTTGTCATTCGGCGGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

229

Amino Acids

25.83

Weight (kDa)

9.46

Isoelectric Point (pI)

46.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 316
AccIII TCCGGA 2 cut(s) 94, 196
AciI CCGC 1 cut(s) 679
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 5 cut(s) 55, 180, 300, 514, 571
AcuI CTGAAG 1 cut(s) 69
AfiI CCNNNNNNNGG 1 cut(s) 496
AflII CTTAAG 1 cut(s) 494
AgsI TTSAA 2 cut(s) 136, 334
AjnI CCWGG 1 cut(s) 264
AjuI GAANNNNNNNTTGG 2 cut(s) 192, 224
AleI CACNNNNGTG 1 cut(s) 149
AluBI AGCT 6 cut(s) 22, 47, 194, 343, 411, 493
AluI AGCT 6 cut(s) 22, 47, 194, 343, 411, 493
Alw21I GWGCWC 1 cut(s) 160
Alw26I GTCTC 1 cut(s) 364
Ama87I CYCGRG 1 cut(s) 147
Aor13HI TCCGGA 2 cut(s) 94, 196
AoxI GGCC 2 cut(s) 3, 681
ApoI RAATTY 5 cut(s) 55, 180, 300, 514, 571
AspLEI GCGC 1 cut(s) 12
AspS9I GGNCC 1 cut(s) 681
AsuC2I CCSGG 2 cut(s) 7, 26
AsuHPI GGTGA 1 cut(s) 646
AvaI CYCGRG 1 cut(s) 147
BbsI GAAGAC 1 cut(s) 251
Bbv12I GWGCWC 1 cut(s) 160
BccI CCATC 2 cut(s) 622, 625
BciT130I CCWGG 1 cut(s) 266
BclI TGATCA 1 cut(s) 601
BcnI CCSGG 2 cut(s) 7, 26
BcoDI GTCTC 1 cut(s) 364
BfaI CTAG 2 cut(s) 408, 685
BfmI CTRYAG 2 cut(s) 351, 663
BfrI CTTAAG 1 cut(s) 494
Bme1390I CCNGG 3 cut(s) 7, 26, 266
BmeT110I CYCGRG 1 cut(s) 147
BmgT120I GGNCC 1 cut(s) 681
BmiI GGNNCC 2 cut(s) 274, 426
BmrFI CCNGG 3 cut(s) 7, 26, 266
BmsI GCATC 2 cut(s) 38, 161
BpiI GAAGAC 1 cut(s) 251
BpuEI CTTGAG 1 cut(s) 331
BpuMI CCSGG 2 cut(s) 7, 26
BsaI GGTCTC 1 cut(s) 364
BsaWI WCCGGW 2 cut(s) 94, 196
Bsc4I CCNNNNNNNGG 1 cut(s) 496
Bse1I ACTGG 2 cut(s) 464, 657
BseAI TCCGGA 2 cut(s) 94, 196
BseBI CCWGG 1 cut(s) 266
BseGI GGATG 1 cut(s) 636
BseLI CCNNNNNNNGG 1 cut(s) 496
BseNI ACTGG 2 cut(s) 464, 657
BshFI GGCC 2 cut(s) 5, 683
BsiHKAI GWGCWC 1 cut(s) 160
BsiHKCI CYCGRG 1 cut(s) 147
BsiSI CCGG 4 cut(s) 6, 25, 95, 197
BslI CCNNNNNNNGG 1 cut(s) 496
BsmAI GTCTC 1 cut(s) 364
BsmI GAATGC 1 cut(s) 381
BsnI GGCC 2 cut(s) 5, 683
Bso31I GGTCTC 1 cut(s) 364
BsoBI CYCGRG 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 160
Bsp13I TCCGGA 2 cut(s) 94, 196
Bsp143I GATC 2 cut(s) 88, 601
BspACI CCGC 1 cut(s) 679
BspANI GGCC 2 cut(s) 5, 683
BspEI TCCGGA 2 cut(s) 94, 196
BspLI GGNNCC 2 cut(s) 274, 426
BspMAI CTGCAG 1 cut(s) 355
BspTI CTTAAG 1 cut(s) 494
BspTNI GGTCTC 1 cut(s) 364
BsrI ACTGG 2 cut(s) 464, 657
BssMI GATC 2 cut(s) 88, 601
BssNAI GTATAC 1 cut(s) 317
Bst1107I GTATAC 1 cut(s) 317
Bst2UI CCWGG 1 cut(s) 266
Bst6I CTCTTC 1 cut(s) 369
BstAFI CTTAAG 1 cut(s) 494
BstC8I GCNNGC 3 cut(s) 14, 176, 681
BstDEI CTNAG 1 cut(s) 368
BstF5I GGATG 1 cut(s) 636
BstHHI GCGC 1 cut(s) 12
BstKTI GATC 2 cut(s) 91, 604
BstMAI GTCTC 1 cut(s) 364
BstMBI GATC 2 cut(s) 88, 601
BstNI CCWGG 1 cut(s) 266
BstSCI CCNGG 3 cut(s) 5, 24, 264
BstSFI CTRYAG 2 cut(s) 351, 663
BstV2I GAAGAC 1 cut(s) 251
BstZ17I GTATAC 1 cut(s) 317
BsuRI GGCC 2 cut(s) 5, 683
BtsCI GGATG 1 cut(s) 636
BtsI GCAGTG 1 cut(s) 360
BtsIMutI CAGTG 2 cut(s) 360, 664
Cac8I GCNNGC 3 cut(s) 14, 176, 681
CfoI GCGC 1 cut(s) 12
Cfr13I GGNCC 1 cut(s) 681
CviAII CATG 1 cut(s) 563
DdeI CTNAG 1 cut(s) 368
DpnI GATC 2 cut(s) 90, 603
DpnII GATC 2 cut(s) 88, 601
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
Eco31I GGTCTC 1 cut(s) 364
Eco57I CTGAAG 1 cut(s) 69
Eco88I CYCGRG 1 cut(s) 147
EcoRI GAATTC 1 cut(s) 514
EcoRII CCWGG 1 cut(s) 264
FaeI CATG 1 cut(s) 566
FaiI YATR 9 cut(s) 114, 236, 292, 317, 401, 509, 522, 552, 564
FatI CATG 1 cut(s) 562
FauI CCCGC 1 cut(s) 672
FbaI TGATCA 1 cut(s) 601
FblI GTMKAC 1 cut(s) 316
FokI GGATG 1 cut(s) 643
FspBI CTAG 2 cut(s) 408, 685
GlaI GCGC 1 cut(s) 11
HaeIII GGCC 2 cut(s) 5, 683
HapII CCGG 4 cut(s) 6, 25, 95, 197
HhaI GCGC 1 cut(s) 12
Hin1II CATG 1 cut(s) 566
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
HindIII AAGCTT 1 cut(s) 341
HpaII CCGG 4 cut(s) 6, 25, 95, 197
HphI GGTGA 1 cut(s) 646
Hpy166II GTNNAC 1 cut(s) 317
Hpy188I TCNGA 4 cut(s) 64, 223, 306, 387
Hpy188III TCNNGA 5 cut(s) 95, 197, 428, 557, 599
Hpy8I GTNNAC 1 cut(s) 317
HpyAV CCTTC 3 cut(s) 44, 133, 263
HpyCH4V TGCA 5 cut(s) 174, 215, 353, 399, 545
HpyF3I CTNAG 1 cut(s) 368
Hsp92II CATG 1 cut(s) 566
HspAI GCGC 1 cut(s) 10
Kpn2I TCCGGA 2 cut(s) 94, 196
Ksp22I TGATCA 1 cut(s) 601
Kzo9I GATC 2 cut(s) 88, 601
LmnI GCTCC 6 cut(s) 27, 199, 278, 430, 616, 642
LweI GCATC 2 cut(s) 38, 161
MaeI CTAG 2 cut(s) 408, 685
MalI GATC 2 cut(s) 90, 603
MboI GATC 2 cut(s) 88, 601
MboII GAAGA 4 cut(s) 83, 256, 356, 587
MhlI GDGCHC 1 cut(s) 160
MluCI AATT 8 cut(s) 55, 130, 180, 216, 300, 514, 571, 621
MnlI CCTC 4 cut(s) 70, 91, 137, 493
MroI TCCGGA 2 cut(s) 94, 196
MseI TTAA 3 cut(s) 252, 486, 495
MslI CAYNNNNRTG 2 cut(s) 149, 289
MspCI CTTAAG 1 cut(s) 494
MspI CCGG 4 cut(s) 6, 25, 95, 197
MspR9I CCNGG 3 cut(s) 7, 26, 266
Mva1269I GAATGC 1 cut(s) 381
MvaI CCWGG 1 cut(s) 266
NciI CCSGG 2 cut(s) 7, 26
NdeII GATC 2 cut(s) 88, 601
NlaIII CATG 1 cut(s) 566
NlaIV GGNNCC 2 cut(s) 274, 426
OliI CACNNNNGTG 1 cut(s) 149
PaeR7I CTCGAG 1 cut(s) 147
PctI GAATGC 1 cut(s) 381
Psp6I CCWGG 1 cut(s) 264
PspGI CCWGG 1 cut(s) 264
PspN4I GGNNCC 2 cut(s) 274, 426
PspPI GGNCC 1 cut(s) 681
PspXI VCTCGAGB 1 cut(s) 147
PstI CTGCAG 1 cut(s) 355
RseI CAYNNNNRTG 2 cut(s) 149, 289
SaqAI TTAA 3 cut(s) 252, 486, 495
Sau3AI GATC 2 cut(s) 88, 601
Sau96I GGNCC 1 cut(s) 681
ScrFI CCNGG 3 cut(s) 7, 26, 266
SduI GDGCHC 1 cut(s) 160
SetI ASST 9 cut(s) 24, 49, 196, 345, 413, 477, 495, 504, 551
SfaNI GCATC 2 cut(s) 38, 161
SfcI CTRYAG 2 cut(s) 351, 663
Sfr274I CTCGAG 1 cut(s) 147
SlaI CTCGAG 1 cut(s) 147
SmiMI CAYNNNNRTG 2 cut(s) 149, 289
SmlI CTYRAG 3 cut(s) 147, 310, 494
SmoI CTYRAG 3 cut(s) 147, 310, 494
Sse9I AATT 8 cut(s) 55, 130, 180, 216, 300, 514, 571, 621
SsiI CCGC 1 cut(s) 679
SspMI CTAG 2 cut(s) 408, 685
StyD4I CCNGG 3 cut(s) 5, 24, 264
TaqI TCGA 3 cut(s) 148, 537, 568
TasI AATT 8 cut(s) 55, 130, 180, 216, 300, 514, 571, 621
Tru1I TTAA 3 cut(s) 252, 486, 495
Tru9I TTAA 3 cut(s) 252, 486, 495
TscAI CASTG 2 cut(s) 360, 664
TspDTI ATGAA 5 cut(s) 173, 251, 468, 472, 546
TspRI CASTG 2 cut(s) 360, 664
Vha464I CTTAAG 1 cut(s) 494
XapI RAATTY 5 cut(s) 55, 180, 300, 514, 571
XcmI CCANNNNNNNNNTGG 1 cut(s) 288
XhoI CTCGAG 1 cut(s) 147
XmiI GTMKAC 1 cut(s) 316
XspI CTAG 2 cut(s) 408, 685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.