Rh3CG222800

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Forward (+)
20789675 .. 20790375
701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG222800.1

Sequence Viewer

Length: 507 bp
ATGCCAGCACCTTTAGATAATGTTCGTCAACTGCAGCTTCATGTTGGGTACTTCTGTGATCACCTAGTCCCGGTAATGGTCTCGCTTTTGAAAGGATTGCCTAATTTGAGTACATTGAACATAAATACTGACCCAGTAGAATACTGCCCTAGAACTAATTCATCCGGATATAATGAGGCATATTGGAAATTGCTAAACCTTTCTTTTGTTAATAAACTTGAGGAGGTAAGCATAGAGCTTCCTAATGGGTCTAATGGAGTCGAGTTAGCATGGTATATACTAGATTATGCCCAGAGTTTGAAGAAAATGGTGATTGTTCATTCACCCGAGCAATCTCATTTCAAAAGGAAGTTGCTAAAAAGAAAAAAGATTTCGAATGTCAGAGTTGTCTTTCAGGAAGATCAAAGACGAGGATTGCAGAGCAAATTAGAAGAAGAATATTGTCAAATAAAGGATAACTATGATTTTCCGACTCCGGAGATGTTACTGGAGAAAGTCCTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

168

Amino Acids

19.51

Weight (kDa)

7.7

Isoelectric Point (pI)

56.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 164, 475
AfaI GTAC 2 cut(s) 50, 112
AfiI CCNNNNNNNGG 2 cut(s) 70, 76
AgsI TTSAA 4 cut(s) 91, 118, 301, 343
AluBI AGCT 2 cut(s) 37, 238
AluI AGCT 2 cut(s) 37, 238
Alw26I GTCTC 1 cut(s) 85
Ama87I CYCGRG 1 cut(s) 326
Aor13HI TCCGGA 2 cut(s) 164, 475
ApeKI GCWGC 1 cut(s) 34
Asp700I GAANNNNTTC 1 cut(s) 157
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 3 cut(s) 53, 315, 322
AsuII TTCGAA 1 cut(s) 374
AvaI CYCGRG 1 cut(s) 326
BaeI ACNNNNGTAYC 2 cut(s) 40, 73
BbvI GCAGC 1 cut(s) 46
BclI TGATCA 1 cut(s) 58
BcnI CCSGG 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 85
BfaI CTAG 3 cut(s) 65, 150, 281
BfmI CTRYAG 1 cut(s) 32
BisI GCNGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 36
Bme1390I CCNGG 1 cut(s) 71
BmeT110I CYCGRG 1 cut(s) 326
BmrFI CCNGG 1 cut(s) 71
BmrI ACTGGG 1 cut(s) 128
BmuI ACTGGG 1 cut(s) 128
Bpu14I TTCGAA 1 cut(s) 374
BpuEI CTTGAG 1 cut(s) 239
BpuMI CCSGG 1 cut(s) 71
BsaI GGTCTC 1 cut(s) 85
BsaWI WCCGGW 2 cut(s) 164, 475
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 76
Bse1I ACTGG 2 cut(s) 134, 492
BseAI TCCGGA 2 cut(s) 164, 475
BseGI GGATG 1 cut(s) 161
BseLI CCNNNNNNNGG 2 cut(s) 70, 76
BseNI ACTGG 2 cut(s) 134, 492
BseRI GAGGAG 1 cut(s) 236
BseXI GCAGC 1 cut(s) 46
BsiHKCI CYCGRG 1 cut(s) 326
BsiSI CCGG 3 cut(s) 71, 165, 476
BslFI GGGAC 1 cut(s) 53
BslI CCNNNNNNNGG 2 cut(s) 70, 76
BsmAI GTCTC 1 cut(s) 85
BsmFI GGGAC 1 cut(s) 53
Bso31I GGTCTC 1 cut(s) 85
BsoBI CYCGRG 1 cut(s) 326
Bsp119I TTCGAA 1 cut(s) 374
Bsp13I TCCGGA 2 cut(s) 164, 475
Bsp143I GATC 2 cut(s) 58, 400
BspEI TCCGGA 2 cut(s) 164, 475
BspMAI CTGCAG 1 cut(s) 36
BspT104I TTCGAA 1 cut(s) 374
BspTNI GGTCTC 1 cut(s) 85
BsrI ACTGG 2 cut(s) 134, 492
BssMI GATC 2 cut(s) 58, 400
BstBI TTCGAA 1 cut(s) 374
BstC8I GCNNGC 1 cut(s) 6
BstF5I GGATG 1 cut(s) 161
BstKTI GATC 2 cut(s) 61, 403
BstMAI GTCTC 1 cut(s) 85
BstMBI GATC 2 cut(s) 58, 400
BstSCI CCNGG 1 cut(s) 69
BstSFI CTRYAG 1 cut(s) 32
BstV1I GCAGC 1 cut(s) 46
BtsCI GGATG 1 cut(s) 161
Cac8I GCNNGC 1 cut(s) 6
Csp6I GTAC 2 cut(s) 49, 111
CviAII CATG 2 cut(s) 41, 270
CviJI RGCY 2 cut(s) 37, 238
CviKI_1 RGCY 2 cut(s) 37, 238
CviQI GTAC 2 cut(s) 49, 111
DpnI GATC 2 cut(s) 60, 402
DpnII GATC 2 cut(s) 58, 400
Eco31I GGTCTC 1 cut(s) 85
Eco88I CYCGRG 1 cut(s) 326
FaeI CATG 2 cut(s) 44, 273
FaqI GGGAC 1 cut(s) 53
FatI CATG 2 cut(s) 40, 269
FbaI TGATCA 1 cut(s) 58
Fnu4HI GCNGC 1 cut(s) 35
FokI GGATG 1 cut(s) 148
Fsp4HI GCNGC 1 cut(s) 35
FspBI CTAG 3 cut(s) 65, 150, 281
GluI GCNGC 1 cut(s) 35
HapII CCGG 3 cut(s) 71, 165, 476
Hin1II CATG 2 cut(s) 44, 273
HincII GTYRAC 1 cut(s) 29
HindII GTYRAC 1 cut(s) 29
HinfI GANTC 2 cut(s) 258, 472
HpaII CCGG 3 cut(s) 71, 165, 476
HphI GGTGA 3 cut(s) 53, 315, 322
Hpy166II GTNNAC 1 cut(s) 29
Hpy188I TCNGA 2 cut(s) 383, 471
Hpy188III TCNNGA 4 cut(s) 165, 395, 476, 499
Hpy8I GTNNAC 1 cut(s) 29
HpyCH4V TGCA 2 cut(s) 34, 418
Hsp92II CATG 2 cut(s) 44, 273
Kpn2I TCCGGA 2 cut(s) 164, 475
Ksp22I TGATCA 1 cut(s) 58
Kzo9I GATC 2 cut(s) 58, 400
LpnPI CCDG 8 cut(s) 18, 84, 147, 178, 305, 380, 473, 489
Lsp1109I GCAGC 1 cut(s) 46
MaeI CTAG 3 cut(s) 65, 150, 281
MaeIII GTNAC 1 cut(s) 483
MalI GATC 2 cut(s) 60, 402
MboI GATC 2 cut(s) 58, 400
MboII GAAGA 4 cut(s) 313, 410, 443, 446
MluCI AATT 4 cut(s) 103, 157, 188, 425
MlyI GAGTC 2 cut(s) 267, 466
MmeI TCCRAC 1 cut(s) 494
MnlI CCTC 4 cut(s) 169, 214, 217, 404
MroI TCCGGA 2 cut(s) 164, 475
MroXI GAANNNNTTC 1 cut(s) 157
MseI TTAA 1 cut(s) 210
MspI CCGG 3 cut(s) 71, 165, 476
MspR9I CCNGG 1 cut(s) 71
NciI CCSGG 1 cut(s) 71
NdeII GATC 2 cut(s) 58, 400
NlaIII CATG 2 cut(s) 44, 273
NspV TTCGAA 1 cut(s) 374
PdmI GAANNNNTTC 1 cut(s) 157
PkrI GCNGC 1 cut(s) 36
PleI GAGTC 2 cut(s) 266, 466
PpsI GAGTC 2 cut(s) 266, 466
PstI CTGCAG 1 cut(s) 36
RsaI GTAC 2 cut(s) 50, 112
RsaNI GTAC 2 cut(s) 49, 111
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 1 cut(s) 35
Sau3AI GATC 2 cut(s) 58, 400
SchI GAGTC 2 cut(s) 267, 466
ScrFI CCNGG 1 cut(s) 71
SetI ASST 6 cut(s) 13, 39, 66, 201, 228, 240
SfcI CTRYAG 1 cut(s) 32
SfuI TTCGAA 1 cut(s) 374
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 4 cut(s) 103, 157, 188, 425
SspI AATATT 1 cut(s) 440
SspMI CTAG 3 cut(s) 65, 150, 281
StyD4I CCNGG 1 cut(s) 69
TaqI TCGA 2 cut(s) 261, 374
TasI AATT 4 cut(s) 103, 157, 188, 425
TatI WGTACW 1 cut(s) 110
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TseI GCWGC 1 cut(s) 34
TspDTI ATGAA 3 cut(s) 29, 150, 308
XmnI GAANNNNTTC 1 cut(s) 157
XspI CTAG 3 cut(s) 65, 150, 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.