RLG00000023944

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000241
Physical Location & Seq
Reverse (-)
30311708 .. 30313700
1993 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023944

Sequence Viewer

Length: 687 bp
ATGGAAGACAGGGGGAAGCGCGAGTTACTGGCTACTACTGCAAGTTGTCAAGGTCATGAGGGTAGAGCTGTTTCCAAGGGTTTGATTGATAGGCTGAGTAATCTTCCGGACCATGTTGCTCATCACATTCTTTCATTCCTTGAAATTACAGACCTTACTTGTTTCGGTTGTGTGTCCAAAAGATGCCGAGAACTTTATCTGTCAACTCCGTCATTGAAATTTGATGGATTTTCCTGGAAGCACTTTGGTACACATGAAAAGGGTTGCAGTTGTGGAGTTATTTGGATAGGCTTTCTTGATATTCTAGTCCCTGCAATGACCTCTCTTTTGGGAGGAATGTCTAAGTTGAGTACATTAATCATAAAGTCTGACTCATTCTTCCGTGGCCCTAAAGCTGATTGTCGTCGTTTTAACATGGGATACTGGAAGCTGCAAAACACTGCTTTTATTTATCAGCTCAAGGAGGTTAGCATGGAGCTTTCCCATGGGTCTAATGGAATCGAGTTTGCTAGATATATCCTTGATCATGCCCAGAATTTGAATAAATTGACAATTCTGCATTCACCACAGCAATCTAATGCTATGAGTAAGTTAAAGAAAAGCAAGATGGCTTCCAACATCACACTTGACTTTCAGGAAGATCAAAGAAGAGGACCTCAGAAGCGAAGAGGAAGAAGGGTTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like FBD

Protein Analysis

229

Amino Acids

25.77

Weight (kDa)

9.55

Isoelectric Point (pI)

47.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 32 - 65 1e-07 F-box domain
F-box-like PF12937 32 - 66 3.8e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 21
AccIII TCCGGA 1 cut(s) 106
AcsI RAATTY 2 cut(s) 218, 535
AfaI GTAC 2 cut(s) 250, 352
AgsI TTSAA 3 cut(s) 143, 217, 541
AjnI CCWGG 1 cut(s) 233
AluBI AGCT 5 cut(s) 68, 395, 430, 457, 478
AluI AGCT 5 cut(s) 68, 395, 430, 457, 478
Aor13HI TCCGGA 1 cut(s) 106
AoxI GGCC 1 cut(s) 385
ApeKI GCWGC 1 cut(s) 430
ApoI RAATTY 2 cut(s) 218, 535
ArsI GACNNNNNNTTYG 2 cut(s) 310, 342
AseI ATTAAT 1 cut(s) 356
AspLEI GCGC 1 cut(s) 21
AspS9I GGNCC 3 cut(s) 109, 386, 653
AsuHPI GGTGA 1 cut(s) 555
AvaII GGWCC 2 cut(s) 109, 653
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 1 cut(s) 417
BccI CCATC 2 cut(s) 218, 601
BciT130I CCWGG 1 cut(s) 235
BciVI GTATCC 1 cut(s) 413
BclI TGATCA 1 cut(s) 523
BfaI CTAG 2 cut(s) 305, 510
BfuI GTATCC 1 cut(s) 413
BisI GCNGC 1 cut(s) 431
BlsI GCNGC 1 cut(s) 432
Bme1390I CCNGG 1 cut(s) 235
Bme18I GGWCC 2 cut(s) 109, 653
BmgT120I GGNCC 3 cut(s) 109, 386, 653
BmrFI CCNGG 1 cut(s) 235
BmsI GCATC 1 cut(s) 173
BpiI GAAGAC 1 cut(s) 12
BpuEI CTTGAG 1 cut(s) 443
BsaJI CCNNGG 3 cut(s) 75, 382, 484
BsaWI WCCGGW 1 cut(s) 106
Bse1I ACTGG 2 cut(s) 33, 428
Bse3DI GCAATG 1 cut(s) 321
BseAI TCCGGA 1 cut(s) 106
BseBI CCWGG 1 cut(s) 235
BseDI CCNNGG 3 cut(s) 75, 382, 484
BseMI GCAATG 1 cut(s) 321
BseMII CTCAG 2 cut(s) 86, 671
BseNI ACTGG 2 cut(s) 33, 428
BseXI GCAGC 1 cut(s) 417
Bsh1236I CGCG 1 cut(s) 21
BshFI GGCC 1 cut(s) 387
BsiSI CCGG 1 cut(s) 107
BslFI GGGAC 1 cut(s) 293
BsmFI GGGAC 1 cut(s) 293
BsmI GAATGC 1 cut(s) 559
BsnI GGCC 1 cut(s) 387
Bsp13I TCCGGA 1 cut(s) 106
Bsp143I GATC 2 cut(s) 523, 640
Bsp19I CCATGG 1 cut(s) 484
BspANI GGCC 1 cut(s) 387
BspCNI CTCAG 2 cut(s) 87, 670
BspEI TCCGGA 1 cut(s) 106
BspFNI CGCG 1 cut(s) 21
BspHI TCATGA 1 cut(s) 55
BsrDI GCAATG 1 cut(s) 321
BsrI ACTGG 2 cut(s) 33, 428
BssECI CCNNGG 3 cut(s) 75, 382, 484
BssMI GATC 2 cut(s) 523, 640
BssT1I CCWWGG 2 cut(s) 75, 484
Bst2UI CCWGG 1 cut(s) 235
Bst6I CTCTTC 2 cut(s) 643, 661
BstDEI CTNAG 3 cut(s) 95, 342, 657
BstDSI CCRYGG 2 cut(s) 382, 484
BstFNI CGCG 1 cut(s) 21
BstHHI GCGC 1 cut(s) 21
BstKTI GATC 2 cut(s) 526, 643
BstMBI GATC 2 cut(s) 523, 640
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNI CCWGG 1 cut(s) 235
BstSCI CCNGG 1 cut(s) 233
BstUI CGCG 1 cut(s) 21
BstV1I GCAGC 1 cut(s) 417
BstV2I GAAGAC 1 cut(s) 12
BsuI GTATCC 1 cut(s) 413
BsuRI GGCC 1 cut(s) 387
BtgI CCRYGG 2 cut(s) 382, 484
BtsI GCAGTG 1 cut(s) 438
BtsIMutI CAGTG 1 cut(s) 438
CciI TCATGA 1 cut(s) 55
CfoI GCGC 1 cut(s) 21
Cfr13I GGNCC 3 cut(s) 109, 386, 653
Csp6I GTAC 2 cut(s) 249, 351
CviAII CATG 7 cut(s) 56, 113, 254, 415, 472, 485, 527
CviQI GTAC 2 cut(s) 249, 351
DdeI CTNAG 3 cut(s) 95, 342, 657
DpnI GATC 2 cut(s) 525, 642
DpnII GATC 2 cut(s) 523, 640
Eam1104I CTCTTC 2 cut(s) 643, 661
EarI CTCTTC 2 cut(s) 643, 661
Eco130I CCWWGG 2 cut(s) 75, 484
Eco47I GGWCC 2 cut(s) 109, 653
EcoO109I RGGNCCY 1 cut(s) 653
EcoRII CCWGG 1 cut(s) 233
EcoT14I CCWWGG 2 cut(s) 75, 484
ErhI CCWWGG 2 cut(s) 75, 484
FaeI CATG 7 cut(s) 59, 116, 257, 418, 475, 488, 530
FaqI GGGAC 1 cut(s) 293
FatI CATG 7 cut(s) 55, 112, 253, 414, 471, 484, 526
FbaI TGATCA 1 cut(s) 523
Fnu4HI GCNGC 1 cut(s) 431
Fsp4HI GCNGC 1 cut(s) 431
FspBI CTAG 2 cut(s) 305, 510
GlaI GCGC 1 cut(s) 20
GluI GCNGC 1 cut(s) 431
HaeIII GGCC 1 cut(s) 387
HapII CCGG 1 cut(s) 107
HhaI GCGC 1 cut(s) 21
Hin1II CATG 7 cut(s) 59, 116, 257, 418, 475, 488, 530
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
HincII GTYRAC 1 cut(s) 204
HindII GTYRAC 1 cut(s) 204
HinfI GANTC 2 cut(s) 371, 498
HpaII CCGG 1 cut(s) 107
HphI GGTGA 1 cut(s) 555
Hpy166II GTNNAC 2 cut(s) 204, 251
Hpy188I TCNGA 2 cut(s) 370, 660
Hpy188III TCNNGA 4 cut(s) 56, 107, 296, 635
Hpy8I GTNNAC 2 cut(s) 204, 251
Hpy99I CGWCG 1 cut(s) 408
HpyAV CCTTC 1 cut(s) 669
HpyCH4V TGCA 5 cut(s) 41, 267, 314, 433, 559
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 3 cut(s) 95, 342, 657
Hsp92II CATG 7 cut(s) 59, 116, 257, 418, 475, 488, 530
HspAI GCGC 1 cut(s) 19
Kpn2I TCCGGA 1 cut(s) 106
Ksp22I TGATCA 1 cut(s) 523
Kzo9I GATC 2 cut(s) 523, 640
LmnI GCTCC 1 cut(s) 475
LpnPI CCDG 8 cut(s) 14, 120, 220, 247, 324, 409, 545, 620
Lsp1109I GCAGC 1 cut(s) 417
LweI GCATC 1 cut(s) 173
MaeI CTAG 2 cut(s) 305, 510
MaeIII GTNAC 1 cut(s) 24
MalI GATC 2 cut(s) 525, 642
MboI GATC 2 cut(s) 523, 640
MboII GAAGA 7 cut(s) 17, 95, 370, 650, 660, 678, 684
MluCI AATT 5 cut(s) 144, 218, 535, 545, 552
MlyI GAGTC 1 cut(s) 365
MmeI TCCRAC 1 cut(s) 639
MnlI CCTC 7 cut(s) 52, 326, 331, 457, 644, 662, 666
MroI TCCGGA 1 cut(s) 106
MseI TTAA 3 cut(s) 356, 411, 593
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 235
Mva1269I GAATGC 1 cut(s) 559
MvaI CCWGG 1 cut(s) 235
MvnI CGCG 1 cut(s) 21
MwoI GCNNNNNNNGC 1 cut(s) 38
NcoI CCATGG 1 cut(s) 484
NdeII GATC 2 cut(s) 523, 640
NlaIII CATG 7 cut(s) 59, 116, 257, 418, 475, 488, 530
NmeAIII GCCGAG 1 cut(s) 212
PagI TCATGA 1 cut(s) 55
PctI GAATGC 1 cut(s) 559
PfeI GAWTC 1 cut(s) 498
PfoI TCCNGGA 1 cut(s) 233
PkrI GCNGC 1 cut(s) 432
PleI GAGTC 1 cut(s) 365
PpsI GAGTC 1 cut(s) 365
PpuMI RGGWCCY 1 cut(s) 653
PshBI ATTAAT 1 cut(s) 356
Psp5II RGGWCCY 1 cut(s) 653
Psp6I CCWGG 1 cut(s) 233
PspGI CCWGG 1 cut(s) 233
PspPI GGNCC 3 cut(s) 109, 386, 653
PspPPI RGGWCCY 1 cut(s) 653
RsaI GTAC 2 cut(s) 250, 352
RsaNI GTAC 2 cut(s) 249, 351
SaqAI TTAA 3 cut(s) 356, 411, 593
SatI GCNGC 1 cut(s) 431
Sau3AI GATC 2 cut(s) 523, 640
Sau96I GGNCC 3 cut(s) 109, 386, 653
SchI GAGTC 1 cut(s) 365
ScrFI CCNGG 1 cut(s) 235
SfaNI GCATC 1 cut(s) 173
SinI GGWCC 2 cut(s) 109, 653
SmlI CTYRAG 1 cut(s) 458
SmoI CTYRAG 1 cut(s) 458
Sse9I AATT 5 cut(s) 144, 218, 535, 545, 552
SspMI CTAG 2 cut(s) 305, 510
StyD4I CCNGG 1 cut(s) 233
StyI CCWWGG 2 cut(s) 75, 484
TaqI TCGA 1 cut(s) 501
TasI AATT 5 cut(s) 144, 218, 535, 545, 552
TatI WGTACW 1 cut(s) 350
TfiI GAWTC 1 cut(s) 498
Tru1I TTAA 3 cut(s) 356, 411, 593
Tru9I TTAA 3 cut(s) 356, 411, 593
TscAI CASTG 1 cut(s) 445
TseI GCWGC 1 cut(s) 430
TspDTI ATGAA 2 cut(s) 123, 270
TspGWI ACGGA 2 cut(s) 198, 371
TspRI CASTG 1 cut(s) 445
VpaK11BI GGWCC 2 cut(s) 109, 653
VspI ATTAAT 1 cut(s) 356
XapI RAATTY 2 cut(s) 218, 535
XcmI CCANNNNNNNNNTGG 1 cut(s) 491
XspI CTAG 2 cut(s) 305, 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.